data_7XRP # _entry.id 7XRP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.361 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7XRP pdb_00007xrp 10.2210/pdb7xrp/pdb WWPDB D_1300029233 ? ? EMDB EMD-33416 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of SARS-CoV-2 spike protein in complex with nanobody C5G2 (local refinement)' _pdbx_database_related.db_id EMD-33416 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7XRP _pdbx_database_status.recvd_initial_deposition_date 2022-05-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, L.' 1 ? 'Sun, H.' 2 ? 'Jiang, Y.' 3 ? 'Liu, X.' 4 ? 'Zhao, D.' 5 ? 'Zheng, Q.' 6 ? 'Li, S.' 7 ? 'Xia, N.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J Nanobiotechnology' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1477-3155 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 20 _citation.language ? _citation.page_first 411 _citation.page_last 411 _citation.title ;A potent synthetic nanobody with broad-spectrum activity neutralizes SARS-CoV-2 virus and the Omicron variant BA.1 through a unique binding mode. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1186/s12951-022-01619-y _citation.pdbx_database_id_PubMed 36109732 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, D.' 1 ? primary 'Liu, L.' 2 ? primary 'Liu, X.' 3 ? primary 'Zhang, J.' 4 ? primary 'Yin, Y.' 5 ? primary 'Luan, L.' 6 ? primary 'Jiang, D.' 7 ? primary 'Yang, X.' 8 ? primary 'Li, L.' 9 ? primary 'Xiong, H.' 10 ? primary 'Xing, D.' 11 ? primary 'Zheng, Q.' 12 ? primary 'Xia, N.' 13 ? primary 'Tao, Y.' 14 ? primary 'Li, S.' 15 ? primary 'Huang, H.' 16 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7XRP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7XRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 32192.271 1 ? ? NTD ? 2 polymer man 'C5G2 nanobody' 13376.778 1 ? ? ? ? 3 polymer man 'Spike protein S1' 21669.250 1 ? ? RBD ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 4 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'S glycoprotein,E2,Peplomer protein' 3 'S glycoprotein,E2,Peplomer protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIF GTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNF KNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVE ; ;AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIF GTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNF KNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVE ; A ? 2 'polypeptide(L)' no no ;DVQLVESGGGSVQAGGSLRLSCAASGKFSHLVFLGWFRQAPGKEREGVAAGLGAYESGYYADSVKGRFTVSLDNAENTVY LQMNSLKPEDTALYYCAALVVLSRDNTEFIAHNYWGQGTQVTVSS ; ;DVQLVESGGGSVQAGGSLRLSCAASGKFSHLVFLGWFRQAPGKEREGVAAGLGAYESGYYADSVKGRFTVSLDNAENTVY LQMNSLKPEDTALYYCAALVVLSRDNTEFIAHNYWGQGTQVTVSS ; B ? 3 'polypeptide(L)' no no ;PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAP ; ;PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAP ; F ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 TYR n 1 3 THR n 1 4 ASN n 1 5 SER n 1 6 PHE n 1 7 THR n 1 8 ARG n 1 9 GLY n 1 10 VAL n 1 11 TYR n 1 12 TYR n 1 13 PRO n 1 14 ASP n 1 15 LYS n 1 16 VAL n 1 17 PHE n 1 18 ARG n 1 19 SER n 1 20 SER n 1 21 VAL n 1 22 LEU n 1 23 HIS n 1 24 SER n 1 25 THR n 1 26 GLN n 1 27 ASP n 1 28 LEU n 1 29 PHE n 1 30 LEU n 1 31 PRO n 1 32 PHE n 1 33 PHE n 1 34 SER n 1 35 ASN n 1 36 VAL n 1 37 THR n 1 38 TRP n 1 39 PHE n 1 40 HIS n 1 41 ALA n 1 42 ILE n 1 43 HIS n 1 44 VAL n 1 45 SER n 1 46 GLY n 1 47 THR n 1 48 ASN n 1 49 GLY n 1 50 THR n 1 51 LYS n 1 52 ARG n 1 53 PHE n 1 54 ASP n 1 55 ASN n 1 56 PRO n 1 57 VAL n 1 58 LEU n 1 59 PRO n 1 60 PHE n 1 61 ASN n 1 62 ASP n 1 63 GLY n 1 64 VAL n 1 65 TYR n 1 66 PHE n 1 67 ALA n 1 68 SER n 1 69 THR n 1 70 GLU n 1 71 LYS n 1 72 SER n 1 73 ASN n 1 74 ILE n 1 75 ILE n 1 76 ARG n 1 77 GLY n 1 78 TRP n 1 79 ILE n 1 80 PHE n 1 81 GLY n 1 82 THR n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 SER n 1 87 LYS n 1 88 THR n 1 89 GLN n 1 90 SER n 1 91 LEU n 1 92 LEU n 1 93 ILE n 1 94 VAL n 1 95 ASN n 1 96 ASN n 1 97 ALA n 1 98 THR n 1 99 ASN n 1 100 VAL n 1 101 VAL n 1 102 ILE n 1 103 LYS n 1 104 VAL n 1 105 CYS n 1 106 GLU n 1 107 PHE n 1 108 GLN n 1 109 PHE n 1 110 CYS n 1 111 ASN n 1 112 ASP n 1 113 PRO n 1 114 PHE n 1 115 LEU n 1 116 GLY n 1 117 VAL n 1 118 TYR n 1 119 TYR n 1 120 HIS n 1 121 LYS n 1 122 ASN n 1 123 ASN n 1 124 LYS n 1 125 SER n 1 126 TRP n 1 127 MET n 1 128 GLU n 1 129 SER n 1 130 GLU n 1 131 PHE n 1 132 ARG n 1 133 VAL n 1 134 TYR n 1 135 SER n 1 136 SER n 1 137 ALA n 1 138 ASN n 1 139 ASN n 1 140 CYS n 1 141 THR n 1 142 PHE n 1 143 GLU n 1 144 TYR n 1 145 VAL n 1 146 SER n 1 147 GLN n 1 148 PRO n 1 149 PHE n 1 150 LEU n 1 151 MET n 1 152 ASP n 1 153 LEU n 1 154 GLU n 1 155 GLY n 1 156 LYS n 1 157 GLN n 1 158 GLY n 1 159 ASN n 1 160 PHE n 1 161 LYS n 1 162 ASN n 1 163 LEU n 1 164 ARG n 1 165 GLU n 1 166 PHE n 1 167 VAL n 1 168 PHE n 1 169 LYS n 1 170 ASN n 1 171 ILE n 1 172 ASP n 1 173 GLY n 1 174 TYR n 1 175 PHE n 1 176 LYS n 1 177 ILE n 1 178 TYR n 1 179 SER n 1 180 LYS n 1 181 HIS n 1 182 THR n 1 183 PRO n 1 184 ILE n 1 185 ASN n 1 186 LEU n 1 187 VAL n 1 188 ARG n 1 189 ASP n 1 190 LEU n 1 191 PRO n 1 192 GLN n 1 193 GLY n 1 194 PHE n 1 195 SER n 1 196 ALA n 1 197 LEU n 1 198 GLU n 1 199 PRO n 1 200 LEU n 1 201 VAL n 1 202 ASP n 1 203 LEU n 1 204 PRO n 1 205 ILE n 1 206 GLY n 1 207 ILE n 1 208 ASN n 1 209 ILE n 1 210 THR n 1 211 ARG n 1 212 PHE n 1 213 GLN n 1 214 THR n 1 215 LEU n 1 216 LEU n 1 217 ALA n 1 218 LEU n 1 219 HIS n 1 220 ARG n 1 221 SER n 1 222 TYR n 1 223 LEU n 1 224 THR n 1 225 PRO n 1 226 GLY n 1 227 ASP n 1 228 SER n 1 229 SER n 1 230 SER n 1 231 GLY n 1 232 TRP n 1 233 THR n 1 234 ALA n 1 235 GLY n 1 236 ALA n 1 237 ALA n 1 238 ALA n 1 239 TYR n 1 240 TYR n 1 241 VAL n 1 242 GLY n 1 243 TYR n 1 244 LEU n 1 245 GLN n 1 246 PRO n 1 247 ARG n 1 248 THR n 1 249 PHE n 1 250 LEU n 1 251 LEU n 1 252 LYS n 1 253 TYR n 1 254 ASN n 1 255 GLU n 1 256 ASN n 1 257 GLY n 1 258 THR n 1 259 ILE n 1 260 THR n 1 261 ASP n 1 262 ALA n 1 263 VAL n 1 264 ASP n 1 265 CYS n 1 266 ALA n 1 267 LEU n 1 268 ASP n 1 269 PRO n 1 270 LEU n 1 271 SER n 1 272 GLU n 1 273 THR n 1 274 LYS n 1 275 CYS n 1 276 THR n 1 277 LEU n 1 278 LYS n 1 279 SER n 1 280 PHE n 1 281 THR n 1 282 VAL n 1 283 GLU n 2 1 ASP n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 SER n 2 12 VAL n 2 13 GLN n 2 14 ALA n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 LEU n 2 19 ARG n 2 20 LEU n 2 21 SER n 2 22 CYS n 2 23 ALA n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 LYS n 2 28 PHE n 2 29 SER n 2 30 HIS n 2 31 LEU n 2 32 VAL n 2 33 PHE n 2 34 LEU n 2 35 GLY n 2 36 TRP n 2 37 PHE n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLU n 2 45 ARG n 2 46 GLU n 2 47 GLY n 2 48 VAL n 2 49 ALA n 2 50 ALA n 2 51 GLY n 2 52 LEU n 2 53 GLY n 2 54 ALA n 2 55 TYR n 2 56 GLU n 2 57 SER n 2 58 GLY n 2 59 TYR n 2 60 TYR n 2 61 ALA n 2 62 ASP n 2 63 SER n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 VAL n 2 71 SER n 2 72 LEU n 2 73 ASP n 2 74 ASN n 2 75 ALA n 2 76 GLU n 2 77 ASN n 2 78 THR n 2 79 VAL n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 ASN n 2 85 SER n 2 86 LEU n 2 87 LYS n 2 88 PRO n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 LEU n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ALA n 2 99 LEU n 2 100 VAL n 2 101 VAL n 2 102 LEU n 2 103 SER n 2 104 ARG n 2 105 ASP n 2 106 ASN n 2 107 THR n 2 108 GLU n 2 109 PHE n 2 110 ILE n 2 111 ALA n 2 112 HIS n 2 113 ASN n 2 114 TYR n 2 115 TRP n 2 116 GLY n 2 117 GLN n 2 118 GLY n 2 119 THR n 2 120 GLN n 2 121 VAL n 2 122 THR n 2 123 VAL n 2 124 SER n 2 125 SER n 3 1 PRO n 3 2 ASN n 3 3 ILE n 3 4 THR n 3 5 ASN n 3 6 LEU n 3 7 CYS n 3 8 PRO n 3 9 PHE n 3 10 GLY n 3 11 GLU n 3 12 VAL n 3 13 PHE n 3 14 ASN n 3 15 ALA n 3 16 THR n 3 17 ARG n 3 18 PHE n 3 19 ALA n 3 20 SER n 3 21 VAL n 3 22 TYR n 3 23 ALA n 3 24 TRP n 3 25 ASN n 3 26 ARG n 3 27 LYS n 3 28 ARG n 3 29 ILE n 3 30 SER n 3 31 ASN n 3 32 CYS n 3 33 VAL n 3 34 ALA n 3 35 ASP n 3 36 TYR n 3 37 SER n 3 38 VAL n 3 39 LEU n 3 40 TYR n 3 41 ASN n 3 42 SER n 3 43 ALA n 3 44 SER n 3 45 PHE n 3 46 SER n 3 47 THR n 3 48 PHE n 3 49 LYS n 3 50 CYS n 3 51 TYR n 3 52 GLY n 3 53 VAL n 3 54 SER n 3 55 PRO n 3 56 THR n 3 57 LYS n 3 58 LEU n 3 59 ASN n 3 60 ASP n 3 61 LEU n 3 62 CYS n 3 63 PHE n 3 64 THR n 3 65 ASN n 3 66 VAL n 3 67 TYR n 3 68 ALA n 3 69 ASP n 3 70 SER n 3 71 PHE n 3 72 VAL n 3 73 ILE n 3 74 ARG n 3 75 GLY n 3 76 ASP n 3 77 GLU n 3 78 VAL n 3 79 ARG n 3 80 GLN n 3 81 ILE n 3 82 ALA n 3 83 PRO n 3 84 GLY n 3 85 GLN n 3 86 THR n 3 87 GLY n 3 88 LYS n 3 89 ILE n 3 90 ALA n 3 91 ASP n 3 92 TYR n 3 93 ASN n 3 94 TYR n 3 95 LYS n 3 96 LEU n 3 97 PRO n 3 98 ASP n 3 99 ASP n 3 100 PHE n 3 101 THR n 3 102 GLY n 3 103 CYS n 3 104 VAL n 3 105 ILE n 3 106 ALA n 3 107 TRP n 3 108 ASN n 3 109 SER n 3 110 ASN n 3 111 ASN n 3 112 LEU n 3 113 ASP n 3 114 SER n 3 115 LYS n 3 116 VAL n 3 117 GLY n 3 118 GLY n 3 119 ASN n 3 120 TYR n 3 121 ASN n 3 122 TYR n 3 123 LEU n 3 124 TYR n 3 125 ARG n 3 126 LEU n 3 127 PHE n 3 128 ARG n 3 129 LYS n 3 130 SER n 3 131 ASN n 3 132 LEU n 3 133 LYS n 3 134 PRO n 3 135 PHE n 3 136 GLU n 3 137 ARG n 3 138 ASP n 3 139 ILE n 3 140 SER n 3 141 THR n 3 142 GLU n 3 143 ILE n 3 144 TYR n 3 145 GLN n 3 146 ALA n 3 147 GLY n 3 148 SER n 3 149 THR n 3 150 PRO n 3 151 CYS n 3 152 ASN n 3 153 GLY n 3 154 VAL n 3 155 GLU n 3 156 GLY n 3 157 PHE n 3 158 ASN n 3 159 CYS n 3 160 TYR n 3 161 PHE n 3 162 PRO n 3 163 LEU n 3 164 GLN n 3 165 SER n 3 166 TYR n 3 167 GLY n 3 168 PHE n 3 169 GLN n 3 170 PRO n 3 171 THR n 3 172 ASN n 3 173 GLY n 3 174 VAL n 3 175 GLY n 3 176 TYR n 3 177 GLN n 3 178 PRO n 3 179 TYR n 3 180 ARG n 3 181 VAL n 3 182 VAL n 3 183 VAL n 3 184 LEU n 3 185 SER n 3 186 PHE n 3 187 GLU n 3 188 LEU n 3 189 LEU n 3 190 HIS n 3 191 ALA n 3 192 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 283 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 125 ? ? ? ? ? ? ? ? ? 'Camelus dromedarius' 9838 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 192 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIF GTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNF KNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYY VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVE ; 27 2 PDB 7XRP 7XRP ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQ IAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCY FPLQSYGFQPTNGVGYQPYRVVVLSFELLHAP ; 330 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7XRP A 1 ? 283 ? P0DTC2 27 ? 309 ? 27 309 2 2 7XRP B 1 ? 125 ? 7XRP 1 ? 125 ? 1 125 3 3 7XRP F 1 ? 192 ? P0DTC2 330 ? 521 ? 330 521 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7XRP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7XRP _struct.title 'Cryo-EM structure of SARS-CoV-2 spike protein in complex with nanobody C5G2 (localized refinement)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7XRP _struct_keywords.text 'SARS-CoV-2, Neutralizing nanobody, Cryo-EM, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP B 62 ? LYS B 65 ? ASP B 62 LYS B 65 5 ? 4 HELX_P HELX_P2 AA2 LYS B 87 ? THR B 91 ? LYS B 87 THR B 91 5 ? 5 HELX_P HELX_P3 AA3 PHE C 9 ? ASN C 14 ? PHE F 338 ASN F 343 1 ? 6 HELX_P HELX_P4 AA4 ARG C 74 ? ILE C 81 ? ARG F 403 ILE F 410 5 ? 8 HELX_P HELX_P5 AA5 GLY C 173 ? GLN C 177 ? GLY F 502 GLN F 506 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 105 SG ? ? ? 1_555 A CYS 140 SG ? ? A CYS 131 A CYS 166 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? A CYS 265 SG ? ? ? 1_555 A CYS 275 SG ? ? A CYS 291 A CYS 301 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? B CYS 22 B CYS 96 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf4 disulf ? ? C CYS 7 SG ? ? ? 1_555 C CYS 32 SG ? ? F CYS 336 F CYS 361 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf5 disulf ? ? C CYS 50 SG ? ? ? 1_555 C CYS 103 SG ? ? F CYS 379 F CYS 432 1_555 ? ? ? ? ? ? ? 2.057 ? ? covale1 covale one ? A ASN 96 ND2 ? ? ? 1_555 F NAG . C1 ? ? A ASN 122 A NAG 403 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale2 covale one ? A ASN 139 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 165 A NAG 401 1_555 ? ? ? ? ? ? ? 1.436 ? N-Glycosylation covale3 covale one ? A ASN 256 ND2 ? ? ? 1_555 E NAG . C1 ? ? A ASN 282 A NAG 402 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale4 covale one ? C ASN 14 ND2 ? ? ? 1_555 G NAG . C1 ? ? F ASN 343 F NAG 601 1_555 ? ? ? ? ? ? ? 1.439 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 3 ? AA3 ? 6 ? AA4 ? 4 ? AA5 ? 5 ? AA6 ? 4 ? AA7 ? 2 ? AA8 ? 5 ? AA9 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA9 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 2 ? SER A 5 ? TYR A 28 SER A 31 AA1 2 SER A 34 ? TRP A 38 ? SER A 60 TRP A 64 AA1 3 TYR A 240 ? TYR A 243 ? TYR A 266 TYR A 269 AA1 4 VAL A 64 ? SER A 68 ? VAL A 90 SER A 94 AA1 5 ASN A 162 ? ILE A 171 ? ASN A 188 ILE A 197 AA1 6 TYR A 174 ? PRO A 183 ? TYR A 200 PRO A 209 AA1 7 GLU A 198 ? LEU A 203 ? GLU A 224 LEU A 229 AA2 1 LEU A 22 ? PHE A 29 ? LEU A 48 PHE A 55 AA2 2 GLN A 245 ? TYR A 253 ? GLN A 271 TYR A 279 AA2 3 ILE A 259 ? ASP A 264 ? ILE A 285 ASP A 290 AA3 1 LEU A 58 ? PRO A 59 ? LEU A 84 PRO A 85 AA3 2 ARG A 211 ? LEU A 215 ? ARG A 237 LEU A 241 AA3 3 GLY A 77 ? GLY A 81 ? GLY A 103 GLY A 107 AA3 4 LEU A 91 ? VAL A 94 ? LEU A 117 VAL A 120 AA3 5 VAL A 100 ? LYS A 103 ? VAL A 126 LYS A 129 AA3 6 GLU A 143 ? SER A 146 ? GLU A 169 SER A 172 AA4 1 LEU B 4 ? GLU B 6 ? LEU B 4 GLU B 6 AA4 2 ARG B 19 ? ALA B 24 ? ARG B 19 ALA B 24 AA4 3 THR B 78 ? GLN B 82 ? THR B 78 GLN B 82 AA4 4 THR B 69 ? ASP B 73 ? THR B 69 ASP B 73 AA5 1 GLY B 10 ? GLN B 13 ? GLY B 10 GLN B 13 AA5 2 THR B 119 ? SER B 124 ? THR B 119 SER B 124 AA5 3 ALA B 92 ? LEU B 99 ? ALA B 92 LEU B 99 AA5 4 VAL B 32 ? GLN B 39 ? VAL B 32 GLN B 39 AA5 5 ARG B 45 ? GLU B 46 ? ARG B 45 GLU B 46 AA6 1 GLY B 10 ? GLN B 13 ? GLY B 10 GLN B 13 AA6 2 THR B 119 ? SER B 124 ? THR B 119 SER B 124 AA6 3 ALA B 92 ? LEU B 99 ? ALA B 92 LEU B 99 AA6 4 TYR B 114 ? TRP B 115 ? TYR B 114 TRP B 115 AA7 1 ALA B 49 ? ALA B 50 ? ALA B 49 ALA B 50 AA7 2 TYR B 59 ? TYR B 60 ? TYR B 59 TYR B 60 AA8 1 ASN C 25 ? ARG C 28 ? ASN F 354 ARG F 357 AA8 2 THR C 64 ? SER C 70 ? THR F 393 SER F 399 AA8 3 VAL C 181 ? GLU C 187 ? VAL F 510 GLU F 516 AA8 4 GLY C 102 ? ALA C 106 ? GLY F 431 ALA F 435 AA8 5 PHE C 48 ? TYR C 51 ? PHE F 377 TYR F 380 AA9 1 LEU C 123 ? ARG C 125 ? LEU F 452 ARG F 454 AA9 2 LEU C 163 ? SER C 165 ? LEU F 492 SER F 494 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 3 ? N THR A 29 O VAL A 36 ? O VAL A 62 AA1 2 3 N THR A 37 ? N THR A 63 O VAL A 241 ? O VAL A 267 AA1 3 4 O GLY A 242 ? O GLY A 268 N TYR A 65 ? N TYR A 91 AA1 4 5 N PHE A 66 ? N PHE A 92 O PHE A 166 ? O PHE A 192 AA1 5 6 N LYS A 169 ? N LYS A 195 O LYS A 176 ? O LYS A 202 AA1 6 7 N PHE A 175 ? N PHE A 201 O LEU A 203 ? O LEU A 229 AA2 1 2 N PHE A 29 ? N PHE A 55 O GLN A 245 ? O GLN A 271 AA2 2 3 N LYS A 252 ? N LYS A 278 O ASP A 261 ? O ASP A 287 AA3 1 2 N LEU A 58 ? N LEU A 84 O PHE A 212 ? O PHE A 238 AA3 2 3 O GLN A 213 ? O GLN A 239 N ILE A 79 ? N ILE A 105 AA3 3 4 N PHE A 80 ? N PHE A 106 O LEU A 91 ? O LEU A 117 AA3 4 5 N LEU A 92 ? N LEU A 118 O LYS A 103 ? O LYS A 129 AA3 5 6 N ILE A 102 ? N ILE A 128 O TYR A 144 ? O TYR A 170 AA4 1 2 N VAL B 5 ? N VAL B 5 O ALA B 23 ? O ALA B 23 AA4 2 3 N LEU B 20 ? N LEU B 20 O LEU B 81 ? O LEU B 81 AA4 3 4 O THR B 78 ? O THR B 78 N ASP B 73 ? N ASP B 73 AA5 1 2 N GLY B 10 ? N GLY B 10 O GLN B 120 ? O GLN B 120 AA5 2 3 O THR B 119 ? O THR B 119 N TYR B 94 ? N TYR B 94 AA5 3 4 O TYR B 95 ? O TYR B 95 N PHE B 37 ? N PHE B 37 AA5 4 5 N ARG B 38 ? N ARG B 38 O GLU B 46 ? O GLU B 46 AA6 1 2 N GLY B 10 ? N GLY B 10 O GLN B 120 ? O GLN B 120 AA6 2 3 O THR B 119 ? O THR B 119 N TYR B 94 ? N TYR B 94 AA6 3 4 N ALA B 98 ? N ALA B 98 O TYR B 114 ? O TYR B 114 AA7 1 2 N ALA B 50 ? N ALA B 50 O TYR B 59 ? O TYR B 59 AA8 1 2 N ASN C 25 ? N ASN F 354 O SER C 70 ? O SER F 399 AA8 2 3 N TYR C 67 ? N TYR F 396 O SER C 185 ? O SER F 514 AA8 3 4 O LEU C 184 ? O LEU F 513 N CYS C 103 ? N CYS F 432 AA8 4 5 O GLY C 102 ? O GLY F 431 N TYR C 51 ? N TYR F 380 AA9 1 2 N TYR C 124 ? N TYR F 453 O GLN C 164 ? O GLN F 493 # _atom_sites.entry_id 7XRP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 27 27 ALA ALA A . n A 1 2 TYR 2 28 28 TYR TYR A . n A 1 3 THR 3 29 29 THR THR A . n A 1 4 ASN 4 30 30 ASN ASN A . n A 1 5 SER 5 31 31 SER SER A . n A 1 6 PHE 6 32 32 PHE PHE A . n A 1 7 THR 7 33 33 THR THR A . n A 1 8 ARG 8 34 34 ARG ARG A . n A 1 9 GLY 9 35 35 GLY GLY A . n A 1 10 VAL 10 36 36 VAL VAL A . n A 1 11 TYR 11 37 37 TYR TYR A . n A 1 12 TYR 12 38 38 TYR TYR A . n A 1 13 PRO 13 39 39 PRO PRO A . n A 1 14 ASP 14 40 40 ASP ASP A . n A 1 15 LYS 15 41 41 LYS LYS A . n A 1 16 VAL 16 42 42 VAL VAL A . n A 1 17 PHE 17 43 43 PHE PHE A . n A 1 18 ARG 18 44 44 ARG ARG A . n A 1 19 SER 19 45 45 SER SER A . n A 1 20 SER 20 46 46 SER SER A . n A 1 21 VAL 21 47 47 VAL VAL A . n A 1 22 LEU 22 48 48 LEU LEU A . n A 1 23 HIS 23 49 49 HIS HIS A . n A 1 24 SER 24 50 50 SER SER A . n A 1 25 THR 25 51 51 THR THR A . n A 1 26 GLN 26 52 52 GLN GLN A . n A 1 27 ASP 27 53 53 ASP ASP A . n A 1 28 LEU 28 54 54 LEU LEU A . n A 1 29 PHE 29 55 55 PHE PHE A . n A 1 30 LEU 30 56 56 LEU LEU A . n A 1 31 PRO 31 57 57 PRO PRO A . n A 1 32 PHE 32 58 58 PHE PHE A . n A 1 33 PHE 33 59 59 PHE PHE A . n A 1 34 SER 34 60 60 SER SER A . n A 1 35 ASN 35 61 61 ASN ASN A . n A 1 36 VAL 36 62 62 VAL VAL A . n A 1 37 THR 37 63 63 THR THR A . n A 1 38 TRP 38 64 64 TRP TRP A . n A 1 39 PHE 39 65 65 PHE PHE A . n A 1 40 HIS 40 66 66 HIS HIS A . n A 1 41 ALA 41 67 ? ? ? A . n A 1 42 ILE 42 68 ? ? ? A . n A 1 43 HIS 43 69 ? ? ? A . n A 1 44 VAL 44 70 ? ? ? A . n A 1 45 SER 45 71 ? ? ? A . n A 1 46 GLY 46 72 ? ? ? A . n A 1 47 THR 47 73 ? ? ? A . n A 1 48 ASN 48 74 ? ? ? A . n A 1 49 GLY 49 75 ? ? ? A . n A 1 50 THR 50 76 ? ? ? A . n A 1 51 LYS 51 77 ? ? ? A . n A 1 52 ARG 52 78 ? ? ? A . n A 1 53 PHE 53 79 79 PHE PHE A . n A 1 54 ASP 54 80 80 ASP ASP A . n A 1 55 ASN 55 81 81 ASN ASN A . n A 1 56 PRO 56 82 82 PRO PRO A . n A 1 57 VAL 57 83 83 VAL VAL A . n A 1 58 LEU 58 84 84 LEU LEU A . n A 1 59 PRO 59 85 85 PRO PRO A . n A 1 60 PHE 60 86 86 PHE PHE A . n A 1 61 ASN 61 87 87 ASN ASN A . n A 1 62 ASP 62 88 88 ASP ASP A . n A 1 63 GLY 63 89 89 GLY GLY A . n A 1 64 VAL 64 90 90 VAL VAL A . n A 1 65 TYR 65 91 91 TYR TYR A . n A 1 66 PHE 66 92 92 PHE PHE A . n A 1 67 ALA 67 93 93 ALA ALA A . n A 1 68 SER 68 94 94 SER SER A . n A 1 69 THR 69 95 95 THR THR A . n A 1 70 GLU 70 96 ? ? ? A . n A 1 71 LYS 71 97 ? ? ? A . n A 1 72 SER 72 98 ? ? ? A . n A 1 73 ASN 73 99 99 ASN ASN A . n A 1 74 ILE 74 100 100 ILE ILE A . n A 1 75 ILE 75 101 101 ILE ILE A . n A 1 76 ARG 76 102 102 ARG ARG A . n A 1 77 GLY 77 103 103 GLY GLY A . n A 1 78 TRP 78 104 104 TRP TRP A . n A 1 79 ILE 79 105 105 ILE ILE A . n A 1 80 PHE 80 106 106 PHE PHE A . n A 1 81 GLY 81 107 107 GLY GLY A . n A 1 82 THR 82 108 108 THR THR A . n A 1 83 THR 83 109 109 THR THR A . n A 1 84 LEU 84 110 110 LEU LEU A . n A 1 85 ASP 85 111 111 ASP ASP A . n A 1 86 SER 86 112 112 SER SER A . n A 1 87 LYS 87 113 113 LYS LYS A . n A 1 88 THR 88 114 114 THR THR A . n A 1 89 GLN 89 115 115 GLN GLN A . n A 1 90 SER 90 116 116 SER SER A . n A 1 91 LEU 91 117 117 LEU LEU A . n A 1 92 LEU 92 118 118 LEU LEU A . n A 1 93 ILE 93 119 119 ILE ILE A . n A 1 94 VAL 94 120 120 VAL VAL A . n A 1 95 ASN 95 121 121 ASN ASN A . n A 1 96 ASN 96 122 122 ASN ASN A . n A 1 97 ALA 97 123 123 ALA ALA A . n A 1 98 THR 98 124 124 THR THR A . n A 1 99 ASN 99 125 125 ASN ASN A . n A 1 100 VAL 100 126 126 VAL VAL A . n A 1 101 VAL 101 127 127 VAL VAL A . n A 1 102 ILE 102 128 128 ILE ILE A . n A 1 103 LYS 103 129 129 LYS LYS A . n A 1 104 VAL 104 130 130 VAL VAL A . n A 1 105 CYS 105 131 131 CYS CYS A . n A 1 106 GLU 106 132 132 GLU GLU A . n A 1 107 PHE 107 133 ? ? ? A . n A 1 108 GLN 108 134 ? ? ? A . n A 1 109 PHE 109 135 ? ? ? A . n A 1 110 CYS 110 136 ? ? ? A . n A 1 111 ASN 111 137 ? ? ? A . n A 1 112 ASP 112 138 ? ? ? A . n A 1 113 PRO 113 139 ? ? ? A . n A 1 114 PHE 114 140 ? ? ? A . n A 1 115 LEU 115 141 ? ? ? A . n A 1 116 GLY 116 142 ? ? ? A . n A 1 117 VAL 117 143 ? ? ? A . n A 1 118 TYR 118 144 ? ? ? A . n A 1 119 TYR 119 145 ? ? ? A . n A 1 120 HIS 120 146 ? ? ? A . n A 1 121 LYS 121 147 ? ? ? A . n A 1 122 ASN 122 148 ? ? ? A . n A 1 123 ASN 123 149 ? ? ? A . n A 1 124 LYS 124 150 ? ? ? A . n A 1 125 SER 125 151 ? ? ? A . n A 1 126 TRP 126 152 ? ? ? A . n A 1 127 MET 127 153 ? ? ? A . n A 1 128 GLU 128 154 ? ? ? A . n A 1 129 SER 129 155 ? ? ? A . n A 1 130 GLU 130 156 ? ? ? A . n A 1 131 PHE 131 157 ? ? ? A . n A 1 132 ARG 132 158 ? ? ? A . n A 1 133 VAL 133 159 ? ? ? A . n A 1 134 TYR 134 160 ? ? ? A . n A 1 135 SER 135 161 ? ? ? A . n A 1 136 SER 136 162 ? ? ? A . n A 1 137 ALA 137 163 ? ? ? A . n A 1 138 ASN 138 164 ? ? ? A . n A 1 139 ASN 139 165 165 ASN ASN A . n A 1 140 CYS 140 166 166 CYS CYS A . n A 1 141 THR 141 167 167 THR THR A . n A 1 142 PHE 142 168 168 PHE PHE A . n A 1 143 GLU 143 169 169 GLU GLU A . n A 1 144 TYR 144 170 170 TYR TYR A . n A 1 145 VAL 145 171 171 VAL VAL A . n A 1 146 SER 146 172 172 SER SER A . n A 1 147 GLN 147 173 173 GLN GLN A . n A 1 148 PRO 148 174 174 PRO PRO A . n A 1 149 PHE 149 175 175 PHE PHE A . n A 1 150 LEU 150 176 176 LEU LEU A . n A 1 151 MET 151 177 ? ? ? A . n A 1 152 ASP 152 178 ? ? ? A . n A 1 153 LEU 153 179 ? ? ? A . n A 1 154 GLU 154 180 ? ? ? A . n A 1 155 GLY 155 181 ? ? ? A . n A 1 156 LYS 156 182 ? ? ? A . n A 1 157 GLN 157 183 ? ? ? A . n A 1 158 GLY 158 184 ? ? ? A . n A 1 159 ASN 159 185 ? ? ? A . n A 1 160 PHE 160 186 ? ? ? A . n A 1 161 LYS 161 187 187 LYS LYS A . n A 1 162 ASN 162 188 188 ASN ASN A . n A 1 163 LEU 163 189 189 LEU LEU A . n A 1 164 ARG 164 190 190 ARG ARG A . n A 1 165 GLU 165 191 191 GLU GLU A . n A 1 166 PHE 166 192 192 PHE PHE A . n A 1 167 VAL 167 193 193 VAL VAL A . n A 1 168 PHE 168 194 194 PHE PHE A . n A 1 169 LYS 169 195 195 LYS LYS A . n A 1 170 ASN 170 196 196 ASN ASN A . n A 1 171 ILE 171 197 197 ILE ILE A . n A 1 172 ASP 172 198 198 ASP ASP A . n A 1 173 GLY 173 199 199 GLY GLY A . n A 1 174 TYR 174 200 200 TYR TYR A . n A 1 175 PHE 175 201 201 PHE PHE A . n A 1 176 LYS 176 202 202 LYS LYS A . n A 1 177 ILE 177 203 203 ILE ILE A . n A 1 178 TYR 178 204 204 TYR TYR A . n A 1 179 SER 179 205 205 SER SER A . n A 1 180 LYS 180 206 206 LYS LYS A . n A 1 181 HIS 181 207 207 HIS HIS A . n A 1 182 THR 182 208 208 THR THR A . n A 1 183 PRO 183 209 209 PRO PRO A . n A 1 184 ILE 184 210 210 ILE ILE A . n A 1 185 ASN 185 211 211 ASN ASN A . n A 1 186 LEU 186 212 212 LEU LEU A . n A 1 187 VAL 187 213 213 VAL VAL A . n A 1 188 ARG 188 214 214 ARG ARG A . n A 1 189 ASP 189 215 215 ASP ASP A . n A 1 190 LEU 190 216 216 LEU LEU A . n A 1 191 PRO 191 217 217 PRO PRO A . n A 1 192 GLN 192 218 218 GLN GLN A . n A 1 193 GLY 193 219 219 GLY GLY A . n A 1 194 PHE 194 220 220 PHE PHE A . n A 1 195 SER 195 221 221 SER SER A . n A 1 196 ALA 196 222 222 ALA ALA A . n A 1 197 LEU 197 223 223 LEU LEU A . n A 1 198 GLU 198 224 224 GLU GLU A . n A 1 199 PRO 199 225 225 PRO PRO A . n A 1 200 LEU 200 226 226 LEU LEU A . n A 1 201 VAL 201 227 227 VAL VAL A . n A 1 202 ASP 202 228 228 ASP ASP A . n A 1 203 LEU 203 229 229 LEU LEU A . n A 1 204 PRO 204 230 230 PRO PRO A . n A 1 205 ILE 205 231 231 ILE ILE A . n A 1 206 GLY 206 232 232 GLY GLY A . n A 1 207 ILE 207 233 233 ILE ILE A . n A 1 208 ASN 208 234 234 ASN ASN A . n A 1 209 ILE 209 235 235 ILE ILE A . n A 1 210 THR 210 236 236 THR THR A . n A 1 211 ARG 211 237 237 ARG ARG A . n A 1 212 PHE 212 238 238 PHE PHE A . n A 1 213 GLN 213 239 239 GLN GLN A . n A 1 214 THR 214 240 240 THR THR A . n A 1 215 LEU 215 241 241 LEU LEU A . n A 1 216 LEU 216 242 242 LEU LEU A . n A 1 217 ALA 217 243 243 ALA ALA A . n A 1 218 LEU 218 244 ? ? ? A . n A 1 219 HIS 219 245 ? ? ? A . n A 1 220 ARG 220 246 ? ? ? A . n A 1 221 SER 221 247 ? ? ? A . n A 1 222 TYR 222 248 ? ? ? A . n A 1 223 LEU 223 249 ? ? ? A . n A 1 224 THR 224 250 ? ? ? A . n A 1 225 PRO 225 251 ? ? ? A . n A 1 226 GLY 226 252 ? ? ? A . n A 1 227 ASP 227 253 ? ? ? A . n A 1 228 SER 228 254 ? ? ? A . n A 1 229 SER 229 255 ? ? ? A . n A 1 230 SER 230 256 ? ? ? A . n A 1 231 GLY 231 257 ? ? ? A . n A 1 232 TRP 232 258 ? ? ? A . n A 1 233 THR 233 259 ? ? ? A . n A 1 234 ALA 234 260 ? ? ? A . n A 1 235 GLY 235 261 261 GLY GLY A . n A 1 236 ALA 236 262 262 ALA ALA A . n A 1 237 ALA 237 263 263 ALA ALA A . n A 1 238 ALA 238 264 264 ALA ALA A . n A 1 239 TYR 239 265 265 TYR TYR A . n A 1 240 TYR 240 266 266 TYR TYR A . n A 1 241 VAL 241 267 267 VAL VAL A . n A 1 242 GLY 242 268 268 GLY GLY A . n A 1 243 TYR 243 269 269 TYR TYR A . n A 1 244 LEU 244 270 270 LEU LEU A . n A 1 245 GLN 245 271 271 GLN GLN A . n A 1 246 PRO 246 272 272 PRO PRO A . n A 1 247 ARG 247 273 273 ARG ARG A . n A 1 248 THR 248 274 274 THR THR A . n A 1 249 PHE 249 275 275 PHE PHE A . n A 1 250 LEU 250 276 276 LEU LEU A . n A 1 251 LEU 251 277 277 LEU LEU A . n A 1 252 LYS 252 278 278 LYS LYS A . n A 1 253 TYR 253 279 279 TYR TYR A . n A 1 254 ASN 254 280 280 ASN ASN A . n A 1 255 GLU 255 281 281 GLU GLU A . n A 1 256 ASN 256 282 282 ASN ASN A . n A 1 257 GLY 257 283 283 GLY GLY A . n A 1 258 THR 258 284 284 THR THR A . n A 1 259 ILE 259 285 285 ILE ILE A . n A 1 260 THR 260 286 286 THR THR A . n A 1 261 ASP 261 287 287 ASP ASP A . n A 1 262 ALA 262 288 288 ALA ALA A . n A 1 263 VAL 263 289 289 VAL VAL A . n A 1 264 ASP 264 290 290 ASP ASP A . n A 1 265 CYS 265 291 291 CYS CYS A . n A 1 266 ALA 266 292 292 ALA ALA A . n A 1 267 LEU 267 293 293 LEU LEU A . n A 1 268 ASP 268 294 294 ASP ASP A . n A 1 269 PRO 269 295 295 PRO PRO A . n A 1 270 LEU 270 296 296 LEU LEU A . n A 1 271 SER 271 297 297 SER SER A . n A 1 272 GLU 272 298 298 GLU GLU A . n A 1 273 THR 273 299 299 THR THR A . n A 1 274 LYS 274 300 300 LYS LYS A . n A 1 275 CYS 275 301 301 CYS CYS A . n A 1 276 THR 276 302 302 THR THR A . n A 1 277 LEU 277 303 303 LEU LEU A . n A 1 278 LYS 278 304 304 LYS LYS A . n A 1 279 SER 279 305 305 SER SER A . n A 1 280 PHE 280 306 306 PHE PHE A . n A 1 281 THR 281 307 307 THR THR A . n A 1 282 VAL 282 308 308 VAL VAL A . n A 1 283 GLU 283 309 309 GLU GLU A . n B 2 1 ASP 1 1 ? ? ? B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 VAL 5 5 5 VAL VAL B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 GLY 9 9 9 GLY GLY B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 SER 11 11 11 SER SER B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 GLN 13 13 13 GLN GLN B . n B 2 14 ALA 14 14 14 ALA ALA B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 SER 17 17 17 SER SER B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 ARG 19 19 19 ARG ARG B . n B 2 20 LEU 20 20 20 LEU LEU B . n B 2 21 SER 21 21 21 SER SER B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 ALA 24 24 24 ALA ALA B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 PHE 28 28 28 PHE PHE B . n B 2 29 SER 29 29 29 SER SER B . n B 2 30 HIS 30 30 30 HIS HIS B . n B 2 31 LEU 31 31 31 LEU LEU B . n B 2 32 VAL 32 32 32 VAL VAL B . n B 2 33 PHE 33 33 33 PHE PHE B . n B 2 34 LEU 34 34 34 LEU LEU B . n B 2 35 GLY 35 35 35 GLY GLY B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 PHE 37 37 37 PHE PHE B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 ALA 40 40 40 ALA ALA B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 GLU 44 44 44 GLU GLU B . n B 2 45 ARG 45 45 45 ARG ARG B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 VAL 48 48 48 VAL VAL B . n B 2 49 ALA 49 49 49 ALA ALA B . n B 2 50 ALA 50 50 50 ALA ALA B . n B 2 51 GLY 51 51 51 GLY GLY B . n B 2 52 LEU 52 52 52 LEU LEU B . n B 2 53 GLY 53 53 53 GLY GLY B . n B 2 54 ALA 54 54 54 ALA ALA B . n B 2 55 TYR 55 55 55 TYR TYR B . n B 2 56 GLU 56 56 56 GLU GLU B . n B 2 57 SER 57 57 57 SER SER B . n B 2 58 GLY 58 58 58 GLY GLY B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 TYR 60 60 60 TYR TYR B . n B 2 61 ALA 61 61 61 ALA ALA B . n B 2 62 ASP 62 62 62 ASP ASP B . n B 2 63 SER 63 63 63 SER SER B . n B 2 64 VAL 64 64 64 VAL VAL B . n B 2 65 LYS 65 65 65 LYS LYS B . n B 2 66 GLY 66 66 66 GLY GLY B . n B 2 67 ARG 67 67 67 ARG ARG B . n B 2 68 PHE 68 68 68 PHE PHE B . n B 2 69 THR 69 69 69 THR THR B . n B 2 70 VAL 70 70 70 VAL VAL B . n B 2 71 SER 71 71 71 SER SER B . n B 2 72 LEU 72 72 72 LEU LEU B . n B 2 73 ASP 73 73 73 ASP ASP B . n B 2 74 ASN 74 74 74 ASN ASN B . n B 2 75 ALA 75 75 75 ALA ALA B . n B 2 76 GLU 76 76 76 GLU GLU B . n B 2 77 ASN 77 77 77 ASN ASN B . n B 2 78 THR 78 78 78 THR THR B . n B 2 79 VAL 79 79 79 VAL VAL B . n B 2 80 TYR 80 80 80 TYR TYR B . n B 2 81 LEU 81 81 81 LEU LEU B . n B 2 82 GLN 82 82 82 GLN GLN B . n B 2 83 MET 83 83 83 MET MET B . n B 2 84 ASN 84 84 84 ASN ASN B . n B 2 85 SER 85 85 85 SER SER B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 LYS 87 87 87 LYS LYS B . n B 2 88 PRO 88 88 88 PRO PRO B . n B 2 89 GLU 89 89 89 GLU GLU B . n B 2 90 ASP 90 90 90 ASP ASP B . n B 2 91 THR 91 91 91 THR THR B . n B 2 92 ALA 92 92 92 ALA ALA B . n B 2 93 LEU 93 93 93 LEU LEU B . n B 2 94 TYR 94 94 94 TYR TYR B . n B 2 95 TYR 95 95 95 TYR TYR B . n B 2 96 CYS 96 96 96 CYS CYS B . n B 2 97 ALA 97 97 97 ALA ALA B . n B 2 98 ALA 98 98 98 ALA ALA B . n B 2 99 LEU 99 99 99 LEU LEU B . n B 2 100 VAL 100 100 100 VAL VAL B . n B 2 101 VAL 101 101 101 VAL VAL B . n B 2 102 LEU 102 102 102 LEU LEU B . n B 2 103 SER 103 103 103 SER SER B . n B 2 104 ARG 104 104 104 ARG ARG B . n B 2 105 ASP 105 105 105 ASP ASP B . n B 2 106 ASN 106 106 106 ASN ASN B . n B 2 107 THR 107 107 107 THR THR B . n B 2 108 GLU 108 108 108 GLU GLU B . n B 2 109 PHE 109 109 109 PHE PHE B . n B 2 110 ILE 110 110 110 ILE ILE B . n B 2 111 ALA 111 111 111 ALA ALA B . n B 2 112 HIS 112 112 112 HIS HIS B . n B 2 113 ASN 113 113 113 ASN ASN B . n B 2 114 TYR 114 114 114 TYR TYR B . n B 2 115 TRP 115 115 115 TRP TRP B . n B 2 116 GLY 116 116 116 GLY GLY B . n B 2 117 GLN 117 117 117 GLN GLN B . n B 2 118 GLY 118 118 118 GLY GLY B . n B 2 119 THR 119 119 119 THR THR B . n B 2 120 GLN 120 120 120 GLN GLN B . n B 2 121 VAL 121 121 121 VAL VAL B . n B 2 122 THR 122 122 122 THR THR B . n B 2 123 VAL 123 123 123 VAL VAL B . n B 2 124 SER 124 124 124 SER SER B . n B 2 125 SER 125 125 125 SER SER B . n C 3 1 PRO 1 330 ? ? ? F . n C 3 2 ASN 2 331 ? ? ? F . n C 3 3 ILE 3 332 ? ? ? F . n C 3 4 THR 4 333 ? ? ? F . n C 3 5 ASN 5 334 ? ? ? F . n C 3 6 LEU 6 335 ? ? ? F . n C 3 7 CYS 7 336 336 CYS CYS F . n C 3 8 PRO 8 337 337 PRO PRO F . n C 3 9 PHE 9 338 338 PHE PHE F . n C 3 10 GLY 10 339 339 GLY GLY F . n C 3 11 GLU 11 340 340 GLU GLU F . n C 3 12 VAL 12 341 341 VAL VAL F . n C 3 13 PHE 13 342 342 PHE PHE F . n C 3 14 ASN 14 343 343 ASN ASN F . n C 3 15 ALA 15 344 344 ALA ALA F . n C 3 16 THR 16 345 345 THR THR F . n C 3 17 ARG 17 346 346 ARG ARG F . n C 3 18 PHE 18 347 347 PHE PHE F . n C 3 19 ALA 19 348 348 ALA ALA F . n C 3 20 SER 20 349 349 SER SER F . n C 3 21 VAL 21 350 350 VAL VAL F . n C 3 22 TYR 22 351 351 TYR TYR F . n C 3 23 ALA 23 352 352 ALA ALA F . n C 3 24 TRP 24 353 353 TRP TRP F . n C 3 25 ASN 25 354 354 ASN ASN F . n C 3 26 ARG 26 355 355 ARG ARG F . n C 3 27 LYS 27 356 356 LYS LYS F . n C 3 28 ARG 28 357 357 ARG ARG F . n C 3 29 ILE 29 358 358 ILE ILE F . n C 3 30 SER 30 359 359 SER SER F . n C 3 31 ASN 31 360 360 ASN ASN F . n C 3 32 CYS 32 361 361 CYS CYS F . n C 3 33 VAL 33 362 362 VAL VAL F . n C 3 34 ALA 34 363 363 ALA ALA F . n C 3 35 ASP 35 364 364 ASP ASP F . n C 3 36 TYR 36 365 365 TYR TYR F . n C 3 37 SER 37 366 366 SER SER F . n C 3 38 VAL 38 367 367 VAL VAL F . n C 3 39 LEU 39 368 368 LEU LEU F . n C 3 40 TYR 40 369 369 TYR TYR F . n C 3 41 ASN 41 370 370 ASN ASN F . n C 3 42 SER 42 371 371 SER SER F . n C 3 43 ALA 43 372 372 ALA ALA F . n C 3 44 SER 44 373 373 SER SER F . n C 3 45 PHE 45 374 374 PHE PHE F . n C 3 46 SER 46 375 375 SER SER F . n C 3 47 THR 47 376 376 THR THR F . n C 3 48 PHE 48 377 377 PHE PHE F . n C 3 49 LYS 49 378 378 LYS LYS F . n C 3 50 CYS 50 379 379 CYS CYS F . n C 3 51 TYR 51 380 380 TYR TYR F . n C 3 52 GLY 52 381 381 GLY GLY F . n C 3 53 VAL 53 382 382 VAL VAL F . n C 3 54 SER 54 383 383 SER SER F . n C 3 55 PRO 55 384 384 PRO PRO F . n C 3 56 THR 56 385 385 THR THR F . n C 3 57 LYS 57 386 386 LYS LYS F . n C 3 58 LEU 58 387 387 LEU LEU F . n C 3 59 ASN 59 388 388 ASN ASN F . n C 3 60 ASP 60 389 389 ASP ASP F . n C 3 61 LEU 61 390 390 LEU LEU F . n C 3 62 CYS 62 391 391 CYS CYS F . n C 3 63 PHE 63 392 392 PHE PHE F . n C 3 64 THR 64 393 393 THR THR F . n C 3 65 ASN 65 394 394 ASN ASN F . n C 3 66 VAL 66 395 395 VAL VAL F . n C 3 67 TYR 67 396 396 TYR TYR F . n C 3 68 ALA 68 397 397 ALA ALA F . n C 3 69 ASP 69 398 398 ASP ASP F . n C 3 70 SER 70 399 399 SER SER F . n C 3 71 PHE 71 400 400 PHE PHE F . n C 3 72 VAL 72 401 401 VAL VAL F . n C 3 73 ILE 73 402 402 ILE ILE F . n C 3 74 ARG 74 403 403 ARG ARG F . n C 3 75 GLY 75 404 404 GLY GLY F . n C 3 76 ASP 76 405 405 ASP ASP F . n C 3 77 GLU 77 406 406 GLU GLU F . n C 3 78 VAL 78 407 407 VAL VAL F . n C 3 79 ARG 79 408 408 ARG ARG F . n C 3 80 GLN 80 409 409 GLN GLN F . n C 3 81 ILE 81 410 410 ILE ILE F . n C 3 82 ALA 82 411 411 ALA ALA F . n C 3 83 PRO 83 412 412 PRO PRO F . n C 3 84 GLY 84 413 413 GLY GLY F . n C 3 85 GLN 85 414 414 GLN GLN F . n C 3 86 THR 86 415 415 THR THR F . n C 3 87 GLY 87 416 416 GLY GLY F . n C 3 88 LYS 88 417 417 LYS LYS F . n C 3 89 ILE 89 418 418 ILE ILE F . n C 3 90 ALA 90 419 419 ALA ALA F . n C 3 91 ASP 91 420 420 ASP ASP F . n C 3 92 TYR 92 421 421 TYR TYR F . n C 3 93 ASN 93 422 422 ASN ASN F . n C 3 94 TYR 94 423 423 TYR TYR F . n C 3 95 LYS 95 424 424 LYS LYS F . n C 3 96 LEU 96 425 425 LEU LEU F . n C 3 97 PRO 97 426 426 PRO PRO F . n C 3 98 ASP 98 427 427 ASP ASP F . n C 3 99 ASP 99 428 428 ASP ASP F . n C 3 100 PHE 100 429 429 PHE PHE F . n C 3 101 THR 101 430 430 THR THR F . n C 3 102 GLY 102 431 431 GLY GLY F . n C 3 103 CYS 103 432 432 CYS CYS F . n C 3 104 VAL 104 433 433 VAL VAL F . n C 3 105 ILE 105 434 434 ILE ILE F . n C 3 106 ALA 106 435 435 ALA ALA F . n C 3 107 TRP 107 436 436 TRP TRP F . n C 3 108 ASN 108 437 437 ASN ASN F . n C 3 109 SER 109 438 438 SER SER F . n C 3 110 ASN 110 439 439 ASN ASN F . n C 3 111 ASN 111 440 440 ASN ASN F . n C 3 112 LEU 112 441 441 LEU LEU F . n C 3 113 ASP 113 442 442 ASP ASP F . n C 3 114 SER 114 443 443 SER SER F . n C 3 115 LYS 115 444 444 LYS LYS F . n C 3 116 VAL 116 445 445 VAL VAL F . n C 3 117 GLY 117 446 446 GLY GLY F . n C 3 118 GLY 118 447 447 GLY GLY F . n C 3 119 ASN 119 448 448 ASN ASN F . n C 3 120 TYR 120 449 449 TYR TYR F . n C 3 121 ASN 121 450 450 ASN ASN F . n C 3 122 TYR 122 451 451 TYR TYR F . n C 3 123 LEU 123 452 452 LEU LEU F . n C 3 124 TYR 124 453 453 TYR TYR F . n C 3 125 ARG 125 454 454 ARG ARG F . n C 3 126 LEU 126 455 455 LEU LEU F . n C 3 127 PHE 127 456 456 PHE PHE F . n C 3 128 ARG 128 457 457 ARG ARG F . n C 3 129 LYS 129 458 458 LYS LYS F . n C 3 130 SER 130 459 459 SER SER F . n C 3 131 ASN 131 460 460 ASN ASN F . n C 3 132 LEU 132 461 461 LEU LEU F . n C 3 133 LYS 133 462 462 LYS LYS F . n C 3 134 PRO 134 463 463 PRO PRO F . n C 3 135 PHE 135 464 464 PHE PHE F . n C 3 136 GLU 136 465 465 GLU GLU F . n C 3 137 ARG 137 466 466 ARG ARG F . n C 3 138 ASP 138 467 467 ASP ASP F . n C 3 139 ILE 139 468 468 ILE ILE F . n C 3 140 SER 140 469 469 SER SER F . n C 3 141 THR 141 470 470 THR THR F . n C 3 142 GLU 142 471 471 GLU GLU F . n C 3 143 ILE 143 472 472 ILE ILE F . n C 3 144 TYR 144 473 473 TYR TYR F . n C 3 145 GLN 145 474 474 GLN GLN F . n C 3 146 ALA 146 475 475 ALA ALA F . n C 3 147 GLY 147 476 476 GLY GLY F . n C 3 148 SER 148 477 477 SER SER F . n C 3 149 THR 149 478 478 THR THR F . n C 3 150 PRO 150 479 479 PRO PRO F . n C 3 151 CYS 151 480 480 CYS CYS F . n C 3 152 ASN 152 481 481 ASN ASN F . n C 3 153 GLY 153 482 482 GLY GLY F . n C 3 154 VAL 154 483 483 VAL VAL F . n C 3 155 GLU 155 484 484 GLU GLU F . n C 3 156 GLY 156 485 485 GLY GLY F . n C 3 157 PHE 157 486 486 PHE PHE F . n C 3 158 ASN 158 487 487 ASN ASN F . n C 3 159 CYS 159 488 488 CYS CYS F . n C 3 160 TYR 160 489 489 TYR TYR F . n C 3 161 PHE 161 490 490 PHE PHE F . n C 3 162 PRO 162 491 491 PRO PRO F . n C 3 163 LEU 163 492 492 LEU LEU F . n C 3 164 GLN 164 493 493 GLN GLN F . n C 3 165 SER 165 494 494 SER SER F . n C 3 166 TYR 166 495 495 TYR TYR F . n C 3 167 GLY 167 496 496 GLY GLY F . n C 3 168 PHE 168 497 497 PHE PHE F . n C 3 169 GLN 169 498 498 GLN GLN F . n C 3 170 PRO 170 499 499 PRO PRO F . n C 3 171 THR 171 500 500 THR THR F . n C 3 172 ASN 172 501 501 ASN ASN F . n C 3 173 GLY 173 502 502 GLY GLY F . n C 3 174 VAL 174 503 503 VAL VAL F . n C 3 175 GLY 175 504 504 GLY GLY F . n C 3 176 TYR 176 505 505 TYR TYR F . n C 3 177 GLN 177 506 506 GLN GLN F . n C 3 178 PRO 178 507 507 PRO PRO F . n C 3 179 TYR 179 508 508 TYR TYR F . n C 3 180 ARG 180 509 509 ARG ARG F . n C 3 181 VAL 181 510 510 VAL VAL F . n C 3 182 VAL 182 511 511 VAL VAL F . n C 3 183 VAL 183 512 512 VAL VAL F . n C 3 184 LEU 184 513 513 LEU LEU F . n C 3 185 SER 185 514 514 SER SER F . n C 3 186 PHE 186 515 515 PHE PHE F . n C 3 187 GLU 187 516 516 GLU GLU F . n C 3 188 LEU 188 517 517 LEU LEU F . n C 3 189 LEU 189 518 ? ? ? F . n C 3 190 HIS 190 519 ? ? ? F . n C 3 191 ALA 191 520 ? ? ? F . n C 3 192 PRO 192 521 ? ? ? F . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email abing0811@xmu.edu.cn _pdbx_contact_author.name_first Qingbing _pdbx_contact_author.name_last Zheng _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7516-9965 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 401 319 NAG NAG A . E 4 NAG 1 402 320 NAG NAG A . F 4 NAG 1 403 321 NAG NAG A . G 4 NAG 1 601 518 NAG NAG F . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-10-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.14_3259: _software.pdbx_ordinal 1 # _pdbx_entry_details.entry_id 7XRP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _em_3d_fitting.entry_id 7XRP _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7XRP _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 120400 _em_3d_reconstruction.resolution 3.88 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'Cryo-EM structure of SARS-CoV-2 spike protein in complex with nanobody C5G2 (local refinement)' 'MULTIPLE SOURCES' COMPLEX '1, 2, 3' ? ? 2 1 ? 'SARS-CoV-2 spike protein' RECOMBINANT COMPLEX 1,3 ? ? 3 1 ? 'nanobody C5G2' RECOMBINANT COMPLEX 2 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7XRP _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7XRP _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7XRP _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 214 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 214 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 214 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 84.30 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -26.70 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 33 ? ? -142.80 17.64 2 1 ASP A 88 ? ? 39.99 41.45 3 1 THR A 109 ? ? -140.35 -2.62 4 1 ASN A 121 ? ? -97.30 55.06 5 1 HIS A 207 ? ? -140.95 46.49 6 1 ASN A 211 ? ? -104.86 -67.28 7 1 LEU A 226 ? ? -90.42 -62.36 8 1 ALA A 292 ? ? -143.36 14.39 9 1 LEU A 293 ? ? -95.83 -60.38 10 1 SER B 29 ? ? -130.24 -36.89 11 1 THR B 107 ? ? -92.98 -60.04 12 1 PHE F 342 ? ? -90.28 -64.22 13 1 TYR F 369 ? ? 72.38 -9.75 14 1 ASP F 405 ? ? -85.67 47.43 15 1 CYS F 488 ? ? -170.86 140.29 16 1 ARG F 509 ? ? -69.61 91.94 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 CYS _pdbx_validate_peptide_omega.auth_asym_id_1 F _pdbx_validate_peptide_omega.auth_seq_id_1 336 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 F _pdbx_validate_peptide_omega.auth_seq_id_2 337 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -148.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 67 ? A ALA 41 2 1 Y 1 A ILE 68 ? A ILE 42 3 1 Y 1 A HIS 69 ? A HIS 43 4 1 Y 1 A VAL 70 ? A VAL 44 5 1 Y 1 A SER 71 ? A SER 45 6 1 Y 1 A GLY 72 ? A GLY 46 7 1 Y 1 A THR 73 ? A THR 47 8 1 Y 1 A ASN 74 ? A ASN 48 9 1 Y 1 A GLY 75 ? A GLY 49 10 1 Y 1 A THR 76 ? A THR 50 11 1 Y 1 A LYS 77 ? A LYS 51 12 1 Y 1 A ARG 78 ? A ARG 52 13 1 Y 1 A GLU 96 ? A GLU 70 14 1 Y 1 A LYS 97 ? A LYS 71 15 1 Y 1 A SER 98 ? A SER 72 16 1 Y 1 A PHE 133 ? A PHE 107 17 1 Y 1 A GLN 134 ? A GLN 108 18 1 Y 1 A PHE 135 ? A PHE 109 19 1 Y 1 A CYS 136 ? A CYS 110 20 1 Y 1 A ASN 137 ? A ASN 111 21 1 Y 1 A ASP 138 ? A ASP 112 22 1 Y 1 A PRO 139 ? A PRO 113 23 1 Y 1 A PHE 140 ? A PHE 114 24 1 Y 1 A LEU 141 ? A LEU 115 25 1 Y 1 A GLY 142 ? A GLY 116 26 1 Y 1 A VAL 143 ? A VAL 117 27 1 Y 1 A TYR 144 ? A TYR 118 28 1 Y 1 A TYR 145 ? A TYR 119 29 1 Y 1 A HIS 146 ? A HIS 120 30 1 Y 1 A LYS 147 ? A LYS 121 31 1 Y 1 A ASN 148 ? A ASN 122 32 1 Y 1 A ASN 149 ? A ASN 123 33 1 Y 1 A LYS 150 ? A LYS 124 34 1 Y 1 A SER 151 ? A SER 125 35 1 Y 1 A TRP 152 ? A TRP 126 36 1 Y 1 A MET 153 ? A MET 127 37 1 Y 1 A GLU 154 ? A GLU 128 38 1 Y 1 A SER 155 ? A SER 129 39 1 Y 1 A GLU 156 ? A GLU 130 40 1 Y 1 A PHE 157 ? A PHE 131 41 1 Y 1 A ARG 158 ? A ARG 132 42 1 Y 1 A VAL 159 ? A VAL 133 43 1 Y 1 A TYR 160 ? A TYR 134 44 1 Y 1 A SER 161 ? A SER 135 45 1 Y 1 A SER 162 ? A SER 136 46 1 Y 1 A ALA 163 ? A ALA 137 47 1 Y 1 A ASN 164 ? A ASN 138 48 1 Y 1 A MET 177 ? A MET 151 49 1 Y 1 A ASP 178 ? A ASP 152 50 1 Y 1 A LEU 179 ? A LEU 153 51 1 Y 1 A GLU 180 ? A GLU 154 52 1 Y 1 A GLY 181 ? A GLY 155 53 1 Y 1 A LYS 182 ? A LYS 156 54 1 Y 1 A GLN 183 ? A GLN 157 55 1 Y 1 A GLY 184 ? A GLY 158 56 1 Y 1 A ASN 185 ? A ASN 159 57 1 Y 1 A PHE 186 ? A PHE 160 58 1 Y 1 A LEU 244 ? A LEU 218 59 1 Y 1 A HIS 245 ? A HIS 219 60 1 Y 1 A ARG 246 ? A ARG 220 61 1 Y 1 A SER 247 ? A SER 221 62 1 Y 1 A TYR 248 ? A TYR 222 63 1 Y 1 A LEU 249 ? A LEU 223 64 1 Y 1 A THR 250 ? A THR 224 65 1 Y 1 A PRO 251 ? A PRO 225 66 1 Y 1 A GLY 252 ? A GLY 226 67 1 Y 1 A ASP 253 ? A ASP 227 68 1 Y 1 A SER 254 ? A SER 228 69 1 Y 1 A SER 255 ? A SER 229 70 1 Y 1 A SER 256 ? A SER 230 71 1 Y 1 A GLY 257 ? A GLY 231 72 1 Y 1 A TRP 258 ? A TRP 232 73 1 Y 1 A THR 259 ? A THR 233 74 1 Y 1 A ALA 260 ? A ALA 234 75 1 Y 1 B ASP 1 ? B ASP 1 76 1 Y 1 F PRO 330 ? C PRO 1 77 1 Y 1 F ASN 331 ? C ASN 2 78 1 Y 1 F ILE 332 ? C ILE 3 79 1 Y 1 F THR 333 ? C THR 4 80 1 Y 1 F ASN 334 ? C ASN 5 81 1 Y 1 F LEU 335 ? C LEU 6 82 1 Y 1 F LEU 518 ? C LEU 189 83 1 Y 1 F HIS 519 ? C HIS 190 84 1 Y 1 F ALA 520 ? C ALA 191 85 1 Y 1 F PRO 521 ? C PRO 192 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 2 1 ? ? 2697049 ? ? 'Severe acute respiratory syndrome coronavirus 2' ? ? 3 2 ? ? 9838 ? ? 'Camelus dromedarius' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 2 1 ? 9606 'Homo sapiens' ? ? 3 2 ? 562 'Escherichia coli' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60.0 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #