HEADER HYDROLASE 12-MAY-22 7XS2 TITLE MONOMER STRUCTURE OF HTRA FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC SERINE ENDOPROTEASE DEGP-LIKE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.21.107; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI (STRAIN ATCC 700392 / SOURCE 3 26695); SOURCE 4 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 5 ORGANISM_TAXID: 85962; SOURCE 6 STRAIN: ATCC 700392 / 26695; SOURCE 7 GENE: HP_1019; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CUI,W.LIU REVDAT 3 20-DEC-23 7XS2 1 JRNL REVDAT 2 29-NOV-23 7XS2 1 REMARK REVDAT 1 17-MAY-23 7XS2 0 JRNL AUTH L.CUI,X.SHI,H.LI,S.WANG,L.GUO,Z.LAN,Y.DAI,Q.ZHANG,Y.WU,W.LIU JRNL TITL CRYSTAL STRUCTURES AND SOLUTION CONFORMATIONS OF HTRA FROM JRNL TITL 2 HELICOBACTER PYLORI REVEAL PH-DEPENDENT OLIGOMERIC JRNL TITL 3 CONVERSION AND CONFORMATIONAL REARRANGEMENTS. JRNL REF INT.J.BIOL.MACROMOL. V. 243 25274 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37301353 JRNL DOI 10.1016/J.IJBIOMAC.2023.125274 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.3060 - 4.9216 1.00 2814 145 0.2216 0.2183 REMARK 3 2 4.9216 - 3.9066 1.00 2651 138 0.1915 0.2123 REMARK 3 3 3.9066 - 3.4128 1.00 2607 141 0.2381 0.2788 REMARK 3 4 3.4128 - 3.1008 1.00 2614 126 0.2571 0.3273 REMARK 3 5 3.1008 - 2.8785 1.00 2562 150 0.2842 0.3086 REMARK 3 6 2.8785 - 2.7088 1.00 2582 123 0.2974 0.3131 REMARK 3 7 2.7088 - 2.5731 1.00 2575 135 0.2924 0.3996 REMARK 3 8 2.5731 - 2.4611 1.00 2547 140 0.2928 0.3373 REMARK 3 9 2.4611 - 2.3664 1.00 2531 143 0.3001 0.3109 REMARK 3 10 2.3664 - 2.2847 1.00 2532 149 0.3256 0.3789 REMARK 3 11 2.2847 - 2.2133 1.00 2567 115 0.3292 0.3821 REMARK 3 12 2.2133 - 2.1500 1.00 2499 157 0.3470 0.4019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2875 REMARK 3 ANGLE : 1.129 3877 REMARK 3 CHIRALITY : 0.065 467 REMARK 3 PLANARITY : 0.005 502 REMARK 3 DIHEDRAL : 4.480 1758 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 46:207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 110.059 49.622 10.656 REMARK 3 T TENSOR REMARK 3 T11: 0.3233 T22: 0.4599 REMARK 3 T33: 0.3849 T12: -0.0404 REMARK 3 T13: 0.0186 T23: -0.0883 REMARK 3 L TENSOR REMARK 3 L11: 6.6310 L22: 4.9712 REMARK 3 L33: 2.9843 L12: -0.8384 REMARK 3 L13: 0.9077 L23: -0.0576 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: 0.6652 S13: -0.0831 REMARK 3 S21: 0.2166 S22: -0.0443 S23: 0.6557 REMARK 3 S31: -0.1784 S32: -0.0569 S33: -0.0156 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 208:337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 124.576 39.690 7.427 REMARK 3 T TENSOR REMARK 3 T11: 0.6863 T22: 1.2636 REMARK 3 T33: 0.8962 T12: 0.2283 REMARK 3 T13: -0.1660 T23: -0.5279 REMARK 3 L TENSOR REMARK 3 L11: 1.3512 L22: 0.4542 REMARK 3 L33: 2.3950 L12: 0.6019 REMARK 3 L13: 0.9828 L23: 0.3956 REMARK 3 S TENSOR REMARK 3 S11: 0.2023 S12: 1.5649 S13: -1.0298 REMARK 3 S21: 0.1008 S22: 0.3162 S23: -0.2177 REMARK 3 S31: 0.9222 S32: 1.2001 S33: -0.1584 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 338:373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 129.998 25.475 2.801 REMARK 3 T TENSOR REMARK 3 T11: 0.5938 T22: 0.5584 REMARK 3 T33: 0.4033 T12: -0.2146 REMARK 3 T13: -0.0318 T23: -0.1486 REMARK 3 L TENSOR REMARK 3 L11: 5.2912 L22: 7.3049 REMARK 3 L33: 5.2262 L12: 1.5087 REMARK 3 L13: 0.5133 L23: -1.1202 REMARK 3 S TENSOR REMARK 3 S11: 0.1804 S12: -0.7514 S13: -0.0629 REMARK 3 S21: 0.1841 S22: -0.7729 S23: 0.3758 REMARK 3 S31: 0.3562 S32: -0.0126 S33: 0.4647 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 374:433 ) REMARK 3 ORIGIN FOR THE GROUP (A): 102.787 16.845 -2.129 REMARK 3 T TENSOR REMARK 3 T11: 0.8110 T22: 0.6822 REMARK 3 T33: 0.4226 T12: -0.3029 REMARK 3 T13: 0.0224 T23: -0.1501 REMARK 3 L TENSOR REMARK 3 L11: 6.1790 L22: 5.2515 REMARK 3 L33: 5.0196 L12: 2.9261 REMARK 3 L13: 0.3740 L23: 0.6470 REMARK 3 S TENSOR REMARK 3 S11: -0.8430 S12: 0.2868 S13: -0.2609 REMARK 3 S21: -0.8354 S22: 0.6326 S23: -0.5268 REMARK 3 S31: -1.5734 S32: 0.7254 S33: 0.2711 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029446. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 75.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 35.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 3.4, 2.7 M REMARK 280 AMMONIUM SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.41033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.82067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.41033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.82067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.41033 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 62.82067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 31.41033 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 62.82067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 35 REMARK 465 GLY A 36 REMARK 465 HIS A 37 REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 TYR A 44 REMARK 465 HIS A 45 REMARK 465 GLU A 61 REMARK 465 LYS A 62 REMARK 465 LYS A 63 REMARK 465 ILE A 64 REMARK 465 LYS A 65 REMARK 465 ASN A 66 REMARK 465 ASN A 67 REMARK 465 PHE A 68 REMARK 465 ILE A 69 REMARK 465 GLY A 70 REMARK 465 GLY A 71 REMARK 465 GLY A 72 REMARK 465 VAL A 73 REMARK 465 PHE A 74 REMARK 465 ASN A 75 REMARK 465 ASP A 76 REMARK 465 PRO A 77 REMARK 465 PHE A 78 REMARK 465 PHE A 79 REMARK 465 GLN A 80 REMARK 465 GLN A 81 REMARK 465 PHE A 82 REMARK 465 PHE A 83 REMARK 465 GLY A 84 REMARK 465 ASP A 85 REMARK 465 LEU A 86 REMARK 465 GLY A 87 REMARK 465 GLY A 88 REMARK 465 MET A 89 REMARK 465 ILE A 90 REMARK 465 PRO A 91 REMARK 465 LYS A 92 REMARK 465 GLU A 93 REMARK 465 ARG A 94 REMARK 465 MET A 95 REMARK 465 GLU A 96 REMARK 465 SER A 241 REMARK 465 LYS A 242 REMARK 465 THR A 243 REMARK 465 GLY A 244 REMARK 465 GLY A 245 REMARK 465 ASN A 246 REMARK 465 HIS A 247 REMARK 465 ARG A 366 REMARK 465 LYS A 367 REMARK 465 ASN A 368 REMARK 465 PRO A 369 REMARK 465 ASN A 370 REMARK 465 LYS A 371 REMARK 465 LYS A 372 REMARK 465 GLN A 382 REMARK 465 GLY A 383 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 295 O HOH A 501 1.93 REMARK 500 O HOH A 511 O HOH A 545 2.02 REMARK 500 OE1 GLN A 395 O HOH A 502 2.02 REMARK 500 OE2 GLU A 373 O HOH A 503 2.04 REMARK 500 O HOH A 511 O HOH A 512 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 402 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 402 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 47 30.52 -89.06 REMARK 500 ASP A 122 -73.13 -103.39 REMARK 500 PHE A 182 -161.33 -122.76 REMARK 500 SER A 284 10.08 -64.72 REMARK 500 ASP A 286 -9.81 71.26 REMARK 500 ASP A 292 -38.70 -130.43 REMARK 500 ASN A 293 70.07 60.26 REMARK 500 LYS A 294 15.92 -141.68 REMARK 500 GLU A 295 80.64 64.37 REMARK 500 LYS A 304 146.76 71.90 REMARK 500 TRP A 316 -4.89 93.08 REMARK 500 ASN A 323 50.11 39.97 REMARK 500 ASP A 353 25.35 49.14 REMARK 500 LYS A 354 -10.61 74.42 REMARK 500 ALA A 377 120.15 -173.74 REMARK 500 SER A 404 118.17 82.90 REMARK 500 ASP A 405 -34.96 175.18 REMARK 500 GLU A 436 -125.65 53.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 293 LYS A 294 139.12 REMARK 500 THR A 374 ILE A 375 -147.11 REMARK 500 LEU A 403 SER A 404 36.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XS2 A 43 475 UNP O25663 O25663_HELPY 11 443 SEQADV 7XS2 MET A 35 UNP O25663 INITIATING METHIONINE SEQADV 7XS2 GLY A 36 UNP O25663 EXPRESSION TAG SEQADV 7XS2 HIS A 37 UNP O25663 EXPRESSION TAG SEQADV 7XS2 HIS A 38 UNP O25663 EXPRESSION TAG SEQADV 7XS2 HIS A 39 UNP O25663 EXPRESSION TAG SEQADV 7XS2 HIS A 40 UNP O25663 EXPRESSION TAG SEQADV 7XS2 HIS A 41 UNP O25663 EXPRESSION TAG SEQADV 7XS2 HIS A 42 UNP O25663 EXPRESSION TAG SEQRES 1 A 441 MET GLY HIS HIS HIS HIS HIS HIS SER TYR HIS ASP SER SEQRES 2 A 441 ILE LYS ASP SER ILE LYS ALA VAL VAL ASN ILE SER THR SEQRES 3 A 441 GLU LYS LYS ILE LYS ASN ASN PHE ILE GLY GLY GLY VAL SEQRES 4 A 441 PHE ASN ASP PRO PHE PHE GLN GLN PHE PHE GLY ASP LEU SEQRES 5 A 441 GLY GLY MET ILE PRO LYS GLU ARG MET GLU ARG ALA LEU SEQRES 6 A 441 GLY SER GLY VAL ILE ILE SER LYS ASP GLY TYR ILE VAL SEQRES 7 A 441 THR ASN ASN HIS VAL ILE ASP GLY ALA ASP LYS ILE LYS SEQRES 8 A 441 VAL THR ILE PRO GLY SER ASN LYS GLU TYR SER ALA THR SEQRES 9 A 441 LEU VAL GLY THR ASP SER GLU SER ASP LEU ALA VAL ILE SEQRES 10 A 441 ARG ILE THR LYS ASP ASN LEU PRO THR ILE LYS PHE SER SEQRES 11 A 441 ASP SER ASN ASP ILE SER VAL GLY ASP LEU VAL PHE ALA SEQRES 12 A 441 ILE GLY ASN PRO PHE GLY VAL GLY GLU SER VAL THR GLN SEQRES 13 A 441 GLY ILE VAL SER ALA LEU ASN LYS SER GLY ILE GLY ILE SEQRES 14 A 441 ASN SER TYR GLU ASN PHE ILE GLN THR ASP ALA SER ILE SEQRES 15 A 441 ASN PRO GLY ASN SER GLY GLY ALA LEU ILE ASP SER ARG SEQRES 16 A 441 GLY GLY LEU VAL GLY ILE ASN THR ALA ILE ILE SER LYS SEQRES 17 A 441 THR GLY GLY ASN HIS GLY ILE GLY PHE ALA ILE PRO SER SEQRES 18 A 441 ASN MET VAL LYS ASP THR VAL THR GLN LEU ILE LYS THR SEQRES 19 A 441 GLY LYS ILE GLU ARG GLY TYR LEU GLY VAL GLY LEU GLN SEQRES 20 A 441 ASP LEU SER GLY ASP LEU GLN ASN SER TYR ASP ASN LYS SEQRES 21 A 441 GLU GLY ALA VAL VAL ILE SER VAL GLU LYS ASP SER PRO SEQRES 22 A 441 ALA LYS LYS ALA GLY ILE LEU VAL TRP ASP LEU ILE THR SEQRES 23 A 441 GLU VAL ASN GLY LYS LYS VAL LYS ASN THR ASN GLU LEU SEQRES 24 A 441 ARG ASN LEU ILE GLY SER MET LEU PRO ASN GLN ARG VAL SEQRES 25 A 441 THR LEU LYS VAL ILE ARG ASP LYS LYS GLU ARG ALA PHE SEQRES 26 A 441 THR LEU THR LEU ALA GLU ARG LYS ASN PRO ASN LYS LYS SEQRES 27 A 441 GLU THR ILE SER ALA GLN ASN GLY ALA GLN GLY GLN LEU SEQRES 28 A 441 ASN GLY LEU GLN VAL GLU ASP LEU THR GLN GLU THR LYS SEQRES 29 A 441 ARG SER MET ARG LEU SER ASP ASP VAL GLN GLY VAL LEU SEQRES 30 A 441 VAL SER GLN VAL ASN GLU ASN SER PRO ALA GLU GLN ALA SEQRES 31 A 441 GLY PHE ARG GLN GLY ASN ILE ILE THR LYS ILE GLU GLU SEQRES 32 A 441 VAL GLU VAL LYS SER VAL ALA ASP PHE ASN HIS ALA LEU SEQRES 33 A 441 GLU LYS TYR LYS GLY LYS PRO LYS ARG PHE LEU VAL LEU SEQRES 34 A 441 ASP LEU ASN GLN GLY TYR ARG ILE ILE LEU VAL LYS FORMUL 2 HOH *72(H2 O) HELIX 1 AA1 SER A 47 ALA A 54 1 8 HELIX 2 AA2 ASN A 114 ASP A 119 1 6 HELIX 3 AA3 SER A 144 ASP A 147 5 4 HELIX 4 AA4 ASP A 165 ILE A 169 5 5 HELIX 5 AA5 SER A 255 GLY A 269 1 15 HELIX 6 AA6 SER A 306 GLY A 312 1 7 HELIX 7 AA7 ASN A 329 SER A 339 1 11 HELIX 8 AA8 THR A 394 MET A 401 1 8 HELIX 9 AA9 SER A 419 GLY A 425 1 7 HELIX 10 AB1 SER A 442 TYR A 453 1 12 SHEET 1 AA1 7 GLU A 134 SER A 136 0 SHEET 2 AA1 7 LYS A 125 THR A 127 -1 N VAL A 126 O TYR A 135 SHEET 3 AA1 7 VAL A 55 SER A 59 -1 N SER A 59 O LYS A 125 SHEET 4 AA1 7 GLY A 100 ILE A 104 -1 O GLY A 100 N ILE A 58 SHEET 5 AA1 7 TYR A 110 THR A 113 -1 O VAL A 112 N VAL A 103 SHEET 6 AA1 7 LEU A 148 ARG A 152 -1 O ILE A 151 N ILE A 111 SHEET 7 AA1 7 THR A 138 ASP A 143 -1 N ASP A 143 O LEU A 148 SHEET 1 AA2 7 LEU A 174 GLY A 179 0 SHEET 2 AA2 7 SER A 187 LYS A 198 -1 O GLY A 191 N VAL A 175 SHEET 3 AA2 7 PHE A 209 THR A 212 -1 O GLN A 211 N ALA A 195 SHEET 4 AA2 7 GLY A 250 PRO A 254 -1 O GLY A 250 N THR A 212 SHEET 5 AA2 7 LEU A 232 ASN A 236 -1 N ILE A 235 O ILE A 253 SHEET 6 AA2 7 ALA A 224 ASP A 227 -1 N LEU A 225 O GLY A 234 SHEET 7 AA2 7 LEU A 174 GLY A 179 -1 N ILE A 178 O ALA A 224 SHEET 1 AA3 4 VAL A 278 ASP A 282 0 SHEET 2 AA3 4 ALA A 297 VAL A 302 -1 O SER A 301 N GLY A 279 SHEET 3 AA3 4 LEU A 318 VAL A 322 -1 O ILE A 319 N ALA A 297 SHEET 4 AA3 4 LYS A 325 LYS A 326 -1 O LYS A 325 N VAL A 322 SHEET 1 AA4 5 VAL A 278 ASP A 282 0 SHEET 2 AA4 5 ALA A 297 VAL A 302 -1 O SER A 301 N GLY A 279 SHEET 3 AA4 5 LEU A 318 VAL A 322 -1 O ILE A 319 N ALA A 297 SHEET 4 AA4 5 ARG A 345 ARG A 352 -1 O LYS A 349 N THR A 320 SHEET 5 AA4 5 LYS A 355 THR A 362 -1 O PHE A 359 N LEU A 348 SHEET 1 AA5 4 LEU A 388 ASP A 392 0 SHEET 2 AA5 4 VAL A 410 VAL A 415 -1 O GLN A 414 N GLN A 389 SHEET 3 AA5 4 ILE A 431 ILE A 435 -1 O ILE A 432 N VAL A 410 SHEET 4 AA5 4 VAL A 438 GLU A 439 -1 O VAL A 438 N ILE A 435 SHEET 1 AA6 5 LEU A 388 ASP A 392 0 SHEET 2 AA6 5 VAL A 410 VAL A 415 -1 O GLN A 414 N GLN A 389 SHEET 3 AA6 5 ILE A 431 ILE A 435 -1 O ILE A 432 N VAL A 410 SHEET 4 AA6 5 LYS A 458 ASP A 464 -1 O LEU A 463 N ILE A 431 SHEET 5 AA6 5 GLY A 468 VAL A 474 -1 O ILE A 472 N PHE A 460 CISPEP 1 ASN A 379 GLY A 380 0 8.87 CISPEP 2 SER A 404 ASP A 405 0 28.21 CISPEP 3 ASP A 405 ASP A 406 0 24.24 CRYST1 146.199 146.199 94.231 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006840 0.003949 0.000000 0.00000 SCALE2 0.000000 0.007898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010612 0.00000