HEADER RNA BINDING PROTEIN 17-MAY-22 7XTP TITLE EIF4E IN COMPLEX WITH A DISULPHIDE-FREE AUTONOMOUS VH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: EIF4E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VH-S4SS; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ENGINEERED AUTONOMOUS VH DOMAIN WITH INTRA-DISULPHIDE COMPND 11 BOND. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF4E, EIF4EL1, EIF4F; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS CAP-DEPENDENT TRANSLATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.J.BROWN,Y.FROSI,S.JIANG,Y.C.LIN REVDAT 3 29-NOV-23 7XTP 1 REMARK REVDAT 2 09-AUG-23 7XTP 1 JRNL REVDAT 1 27-JUL-22 7XTP 0 JRNL AUTH Y.FROSI,Y.C.LIN,J.SHIMIN,S.R.RAMLAN,K.HEW,A.H.ENGMAN, JRNL AUTH 2 A.PILLAI,K.YEUNG,Y.X.CHENG,T.CORNVIK,P.NORDLUND,M.GOH, JRNL AUTH 3 D.LAMA,Z.P.GATES,C.S.VERMA,D.THEAN,D.P.LANE,I.ASIAL, JRNL AUTH 4 C.J.BROWN JRNL TITL ENGINEERING AN AUTONOMOUS VH DOMAIN TO MODULATE JRNL TITL 2 INTRACELLULAR PATHWAYS AND TO INTERROGATE THE EIF4F COMPLEX. JRNL REF NAT COMMUN V. 13 4854 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35982046 JRNL DOI 10.1038/S41467-022-32463-1 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 59269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.163 REMARK 3 FREE R VALUE TEST SET COUNT : 3060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4095 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4849 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33200 REMARK 3 B22 (A**2) : -0.83200 REMARK 3 B33 (A**2) : -0.42800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.49100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5101 ; 0.002 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4709 ; 0.006 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6949 ; 1.172 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10833 ; 1.134 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 637 ; 6.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 269 ;29.622 ;21.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 853 ;12.496 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;10.496 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6107 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1255 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 844 ; 0.167 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 97 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2386 ; 0.154 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 378 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2485 ; 0.746 ; 2.331 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2484 ; 0.746 ; 2.330 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3110 ; 1.345 ; 3.487 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3111 ; 1.345 ; 3.487 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2616 ; 0.655 ; 2.430 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2616 ; 0.655 ; 2.430 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3828 ; 1.165 ; 3.601 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3829 ; 1.165 ; 3.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029561. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59269 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.828 REMARK 200 RESOLUTION RANGE LOW (A) : 46.332 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7D6Y REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN I/F_PLUS/MINUS REMARK 200 COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM HEPES PH7.5, 25% PEG 6000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.60350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 5.44081 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -28.60350 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.77533 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 81.06381 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -28.60350 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -78.77533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 PRO A 12 REMARK 465 ASN A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 THR A 22 REMARK 465 GLU A 23 REMARK 465 SER A 24 REMARK 465 ASN A 25 REMARK 465 GLN A 26 REMARK 465 GLU A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 GLU A 32 REMARK 465 LYS A 206 REMARK 465 SER A 207 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 THR A 210 REMARK 465 THR A 211 REMARK 465 LYS A 212 REMARK 465 ASN A 213 REMARK 465 ARG A 214 REMARK 465 PHE A 215 REMARK 465 VAL A 216 REMARK 465 VAL A 217 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 GLU B 5 REMARK 465 PRO B 6 REMARK 465 GLU B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 THR B 11 REMARK 465 PRO B 12 REMARK 465 ASN B 13 REMARK 465 PRO B 14 REMARK 465 PRO B 15 REMARK 465 THR B 16 REMARK 465 THR B 17 REMARK 465 GLU B 18 REMARK 465 GLU B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 THR B 22 REMARK 465 GLU B 23 REMARK 465 SER B 24 REMARK 465 ASN B 25 REMARK 465 GLN B 26 REMARK 465 GLU B 27 REMARK 465 VAL B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 PRO B 31 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 GLY B 208 REMARK 465 SER B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 465 LYS B 212 REMARK 465 ASN B 213 REMARK 465 ARG B 214 REMARK 465 PHE B 215 REMARK 465 VAL B 216 REMARK 465 VAL B 217 REMARK 465 MET C 0 REMARK 465 GLY C 135 REMARK 465 ALA C 136 REMARK 465 ALA C 137 REMARK 465 GLU C 138 REMARK 465 GLN C 139 REMARK 465 LYS C 140 REMARK 465 LEU C 141 REMARK 465 ILE C 142 REMARK 465 SER C 143 REMARK 465 GLU C 144 REMARK 465 GLU C 145 REMARK 465 ASP C 146 REMARK 465 LEU C 147 REMARK 465 HIS C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 MET D 0 REMARK 465 SER D 1 REMARK 465 SER D 134 REMARK 465 GLY D 135 REMARK 465 ALA D 136 REMARK 465 ALA D 137 REMARK 465 GLU D 138 REMARK 465 GLN D 139 REMARK 465 LYS D 140 REMARK 465 LEU D 141 REMARK 465 ILE D 142 REMARK 465 SER D 143 REMARK 465 GLU D 144 REMARK 465 GLU D 145 REMARK 465 ASP D 146 REMARK 465 LEU D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 21.94 -150.13 REMARK 500 ASP A 125 -39.48 -137.78 REMARK 500 ASP A 143 -129.78 56.54 REMARK 500 ASN A 172 82.73 -67.26 REMARK 500 ASP B 67 22.35 -140.82 REMARK 500 ASP B 143 -116.17 56.25 REMARK 500 SER C 117 -125.60 56.16 REMARK 500 ALA D 93 163.47 179.08 REMARK 500 SER D 117 -126.52 55.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MGO A 301 REMARK 610 MGO B 301 DBREF 7XTP A 1 217 UNP P06730 IF4E_HUMAN 1 217 DBREF 7XTP B 1 217 UNP P06730 IF4E_HUMAN 1 217 DBREF 7XTP C 0 153 PDB 7XTP 7XTP 0 153 DBREF 7XTP D 0 153 PDB 7XTP 7XTP 0 153 SEQRES 1 A 217 MET ALA THR VAL GLU PRO GLU THR THR PRO THR PRO ASN SEQRES 2 A 217 PRO PRO THR THR GLU GLU GLU LYS THR GLU SER ASN GLN SEQRES 3 A 217 GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 4 A 217 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 5 A 217 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 6 A 217 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 7 A 217 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 8 A 217 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 9 A 217 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 10 A 217 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 11 A 217 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 12 A 217 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 13 A 217 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 14 A 217 CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG VAL SEQRES 15 A 217 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 16 A 217 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 17 A 217 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 217 MET ALA THR VAL GLU PRO GLU THR THR PRO THR PRO ASN SEQRES 2 B 217 PRO PRO THR THR GLU GLU GLU LYS THR GLU SER ASN GLN SEQRES 3 B 217 GLU VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 4 B 217 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 5 B 217 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 6 B 217 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 7 B 217 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 8 B 217 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 9 B 217 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 10 B 217 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 11 B 217 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 12 B 217 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 13 B 217 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 14 B 217 CYS GLU ASN ARG GLU ALA VAL THR HIS ILE GLY ARG VAL SEQRES 15 B 217 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 16 B 217 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 17 B 217 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 C 154 MET SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 C 154 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ILE SEQRES 3 C 154 SER GLY PHE SER ILE SER SER THR SER ILE ASP TRP VAL SEQRES 4 C 154 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG SEQRES 5 C 154 ILE SER PRO SER SER GLY SER THR SER TYR ALA ASP SER SEQRES 6 C 154 VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER LYS SEQRES 7 C 154 ASN THR VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 C 154 ASP THR ALA VAL TYR TYR CYS GLY ARG VAL ALA LYS ALA SEQRES 9 C 154 LEU ASN SER ARG SER PRO SER PHE VAL VAL ASN THR TYR SEQRES 10 C 154 SER SER ILE GLY PHE ASP TYR ARG GLY GLN GLY THR LEU SEQRES 11 C 154 VAL THR VAL SER SER GLY ALA ALA GLU GLN LYS LEU ILE SEQRES 12 C 154 SER GLU GLU ASP LEU HIS HIS HIS HIS HIS HIS SEQRES 1 D 154 MET SER GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 D 154 VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA ILE SEQRES 3 D 154 SER GLY PHE SER ILE SER SER THR SER ILE ASP TRP VAL SEQRES 4 D 154 ARG GLN ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ARG SEQRES 5 D 154 ILE SER PRO SER SER GLY SER THR SER TYR ALA ASP SER SEQRES 6 D 154 VAL LYS GLY ARG PHE THR ILE SER ALA ASP THR SER LYS SEQRES 7 D 154 ASN THR VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 D 154 ASP THR ALA VAL TYR TYR CYS GLY ARG VAL ALA LYS ALA SEQRES 9 D 154 LEU ASN SER ARG SER PRO SER PHE VAL VAL ASN THR TYR SEQRES 10 D 154 SER SER ILE GLY PHE ASP TYR ARG GLY GLN GLY THR LEU SEQRES 11 D 154 VAL THR VAL SER SER GLY ALA ALA GLU GLN LYS LEU ILE SEQRES 12 D 154 SER GLU GLU ASP LEU HIS HIS HIS HIS HIS HIS HET MGO A 301 29 HET MGO B 301 29 HETNAM MGO [[(2R,3S,4R,5R)-5-(6-AMINO-3-METHYL-4-OXO-5H-IMIDAZO[4, HETNAM 2 MGO 5-C]PYRIDIN-1-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY- HETNAM 3 MGO HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE FORMUL 5 MGO 2(C12 H20 N4 O14 P3 1+) FORMUL 7 HOH *388(H2 O) HELIX 1 AA1 TRP A 56 ALA A 58 5 3 HELIX 2 AA2 VAL A 69 ILE A 79 1 11 HELIX 3 AA3 LEU A 81 LEU A 85 5 5 HELIX 4 AA4 GLN A 120 ASP A 125 1 6 HELIX 5 AA5 ASP A 125 GLY A 139 1 15 HELIX 6 AA6 PHE A 142 ASP A 147 5 6 HELIX 7 AA7 ASN A 172 GLY A 188 1 17 HELIX 8 AA8 HIS A 200 ALA A 204 1 5 HELIX 9 AA9 TRP B 56 ALA B 58 5 3 HELIX 10 AB1 VAL B 69 ILE B 79 1 11 HELIX 11 AB2 LEU B 81 LEU B 85 5 5 HELIX 12 AB3 GLN B 120 GLY B 139 1 20 HELIX 13 AB4 PHE B 142 ASP B 147 5 6 HELIX 14 AB5 ASN B 172 GLY B 188 1 17 HELIX 15 AB6 HIS B 200 THR B 205 1 6 HELIX 16 AB7 SER C 29 THR C 33 5 5 HELIX 17 AB8 THR C 75 LYS C 77 5 3 HELIX 18 AB9 ARG C 88 THR C 92 5 5 HELIX 19 AC1 LYS C 102 ASN C 105 5 4 HELIX 20 AC2 SER C 108 SER C 117 1 10 HELIX 21 AC3 SER D 29 THR D 33 5 5 HELIX 22 AC4 ASP D 63 LYS D 66 5 4 HELIX 23 AC5 THR D 75 LYS D 77 5 3 HELIX 24 AC6 ARG D 88 THR D 92 5 5 HELIX 25 AC7 LYS D 102 ASN D 105 5 4 HELIX 26 AC8 SER D 108 SER D 117 1 10 SHEET 1 AA1 7 LEU A 60 THR A 68 0 SHEET 2 AA1 7 PRO A 38 PHE A 48 -1 N TRP A 43 O PHE A 66 SHEET 3 AA1 7 ASP A 90 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 7 VAL A 149 ASN A 155 -1 O VAL A 154 N TYR A 91 SHEET 5 AA1 7 LYS A 162 THR A 167 -1 O TRP A 166 N CYS A 150 SHEET 6 AA1 7 GLY A 111 THR A 116 -1 N GLY A 111 O THR A 167 SHEET 7 AA1 7 ILE A 195 SER A 199 -1 O GLY A 196 N LEU A 114 SHEET 1 AA2 7 LEU B 60 THR B 68 0 SHEET 2 AA2 7 PRO B 38 PHE B 48 -1 N PHE B 47 O ARG B 61 SHEET 3 AA2 7 ASP B 90 LYS B 95 -1 O SER B 92 N TRP B 46 SHEET 4 AA2 7 VAL B 149 ASN B 155 -1 O VAL B 154 N TYR B 91 SHEET 5 AA2 7 LYS B 162 THR B 167 -1 O LYS B 162 N ASN B 155 SHEET 6 AA2 7 GLY B 111 THR B 116 -1 N ILE B 115 O ILE B 163 SHEET 7 AA2 7 VAL B 194 SER B 199 -1 O GLN B 198 N ARG B 112 SHEET 1 AA3 4 GLN C 4 SER C 8 0 SHEET 2 AA3 4 LEU C 19 SER C 26 -1 O ALA C 24 N VAL C 6 SHEET 3 AA3 4 THR C 79 MET C 84 -1 O MET C 84 N LEU C 19 SHEET 4 AA3 4 PHE C 69 ASP C 74 -1 N SER C 72 O TYR C 81 SHEET 1 AA4 6 GLY C 11 VAL C 13 0 SHEET 2 AA4 6 THR C 128 VAL C 132 1 O THR C 131 N GLY C 11 SHEET 3 AA4 6 ALA C 93 VAL C 100 -1 N TYR C 95 O THR C 128 SHEET 4 AA4 6 ILE C 35 GLN C 40 -1 N VAL C 38 O TYR C 96 SHEET 5 AA4 6 GLU C 47 ILE C 52 -1 O ALA C 50 N TRP C 37 SHEET 6 AA4 6 THR C 59 TYR C 61 -1 O SER C 60 N ARG C 51 SHEET 1 AA5 4 GLY C 11 VAL C 13 0 SHEET 2 AA5 4 THR C 128 VAL C 132 1 O THR C 131 N GLY C 11 SHEET 3 AA5 4 ALA C 93 VAL C 100 -1 N TYR C 95 O THR C 128 SHEET 4 AA5 4 PHE C 121 ARG C 124 -1 O TYR C 123 N ARG C 99 SHEET 1 AA6 4 GLN D 4 SER D 8 0 SHEET 2 AA6 4 LEU D 19 SER D 26 -1 O SER D 26 N GLN D 4 SHEET 3 AA6 4 THR D 79 MET D 84 -1 O MET D 84 N LEU D 19 SHEET 4 AA6 4 PHE D 69 ASP D 74 -1 N THR D 70 O GLN D 83 SHEET 1 AA7 6 LEU D 12 VAL D 13 0 SHEET 2 AA7 6 THR D 128 VAL D 132 1 O THR D 131 N VAL D 13 SHEET 3 AA7 6 ALA D 93 VAL D 100 -1 N TYR D 95 O THR D 128 SHEET 4 AA7 6 ILE D 35 GLN D 40 -1 N VAL D 38 O TYR D 96 SHEET 5 AA7 6 GLU D 47 ILE D 52 -1 O GLU D 47 N ARG D 39 SHEET 6 AA7 6 THR D 59 TYR D 61 -1 O SER D 60 N ARG D 51 SHEET 1 AA8 4 LEU D 12 VAL D 13 0 SHEET 2 AA8 4 THR D 128 VAL D 132 1 O THR D 131 N VAL D 13 SHEET 3 AA8 4 ALA D 93 VAL D 100 -1 N TYR D 95 O THR D 128 SHEET 4 AA8 4 PHE D 121 ARG D 124 -1 O TYR D 123 N ARG D 99 SSBOND 1 CYS C 23 CYS C 97 1555 1555 2.03 SSBOND 2 CYS D 23 CYS D 97 1555 1555 2.04 CRYST1 75.623 57.207 78.963 90.00 93.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013223 0.000000 0.000913 0.00000 SCALE2 0.000000 0.017480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012694 0.00000