HEADER DNA BINDING PROTEIN/DNA 21-MAY-22 7XV8 TITLE CRYSTAL STRUCTURE OF THE HUMAN TR4 DNA-BINDING DOMAIN HOMODIMER BOUND TITLE 2 TO DR1 RESPONSE ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP C MEMBER 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ORPHAN NUCLEAR RECEPTOR TAK1,ORPHAN NUCLEAR RECEPTOR TR4, COMPND 5 TESTICULAR RECEPTOR 4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*GP*GP*CP*AP*GP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*A)-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*CP*TP*GP*C)-3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR2C2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 11 ORGANISM_TAXID: 2853804; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 15 ORGANISM_TAXID: 2853804 KEYWDS TRANSCRIPTIONAL REGULATION, DNA BINDING, PROTEIN-DNA COMPLEX, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,Z.CHEN REVDAT 4 29-NOV-23 7XV8 1 REMARK REVDAT 3 08-MAR-23 7XV8 1 JRNL REVDAT 2 01-FEB-23 7XV8 1 JRNL REVDAT 1 28-DEC-22 7XV8 0 JRNL AUTH Y.LIU,L.MA,M.LI,Z.TIAN,M.YANG,X.WU,X.WANG,G.SHANG,M.XIE, JRNL AUTH 2 Y.CHEN,X.LIU,L.JIANG,W.WU,C.XU,L.XIA,G.LI,S.DAI,Z.CHEN JRNL TITL STRUCTURES OF HUMAN TR4LBD-JAZF1 AND TR4DBD-DNA COMPLEXES JRNL TITL 2 REVEAL THE MOLECULAR BASIS OF TRANSCRIPTIONAL REGULATION. JRNL REF NUCLEIC ACIDS RES. V. 51 1443 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36651297 JRNL DOI 10.1093/NAR/GKAC1259 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 5207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.166 REMARK 3 FREE R VALUE TEST SET COUNT : 269 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 64.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1020 REMARK 3 NUCLEIC ACID ATOMS : 726 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03800 REMARK 3 B22 (A**2) : -0.03800 REMARK 3 B33 (A**2) : 0.07500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.516 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.325 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.861 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.892 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1846 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1222 ; 0.002 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2635 ; 1.548 ; 1.414 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2820 ; 1.540 ; 2.055 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 151 ; 7.995 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;36.514 ;21.053 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 142 ;18.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;12.609 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 247 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1687 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 359 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 21 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 798 ; 0.204 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 46 ; 0.161 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.130 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 608 ; 4.724 ; 6.297 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 607 ; 4.705 ; 6.293 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 757 ; 7.272 ; 9.438 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 758 ; 7.273 ; 9.444 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1238 ; 4.492 ; 6.107 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1237 ; 4.482 ; 6.105 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1878 ; 6.786 ; 9.117 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1878 ; 6.786 ; 9.117 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5486 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.199 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3DZU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, SODIUM CITRATE, AMMONIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.75300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.93700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.93700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.12950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.93700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.93700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.37650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.93700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.93700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 181.12950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.93700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.93700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 60.37650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.75300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL B 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 113 CG1 CG2 REMARK 470 VAL A 114 CG1 CG2 REMARK 470 GLU A 115 OE1 OE2 REMARK 470 VAL A 119 CG1 CG2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 ARG A 127 NH1 NH2 REMARK 470 TYR A 129 OH REMARK 470 VAL A 132 CG1 CG2 REMARK 470 SER A 133 OG REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 VAL A 145 CG1 CG2 REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 THR A 150 OG1 REMARK 470 SER A 152 OG REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 157 CD OE1 NE2 REMARK 470 ASP A 158 CG OD1 OD2 REMARK 470 ILE A 160 CG1 CG2 CD1 REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 ASN A 162 OD1 ND2 REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 HIS A 164 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 165 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 175 CE NZ REMARK 470 LYS A 176 CE NZ REMARK 470 GLU A 179 CD OE1 OE2 REMARK 470 LYS A 183 CE NZ REMARK 470 VAL A 187 CG1 CG2 REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 SER A 189 C O CB OG REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 VAL B 119 CG1 CG2 REMARK 470 LYS B 123 CD CE NZ REMARK 470 SER B 125 OG REMARK 470 ARG B 127 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 132 CG1 CG2 REMARK 470 SER B 133 OG REMARK 470 GLU B 135 OE1 OE2 REMARK 470 LYS B 138 CG CD CE NZ REMARK 470 LYS B 147 NZ REMARK 470 SER B 152 OG REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 SER B 155 CB OG REMARK 470 ASN B 156 CG OD1 ND2 REMARK 470 GLN B 157 CG CD OE1 NE2 REMARK 470 ILE B 160 CG1 CG2 CD1 REMARK 470 ILE B 161 CD1 REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 HIS B 164 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 165 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 168 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 LYS B 176 CE NZ REMARK 470 MET B 182 CE REMARK 470 LYS B 183 CD CE NZ REMARK 470 GLU B 185 OE1 OE2 REMARK 470 VAL B 187 CG1 REMARK 470 GLN B 188 CG CD OE1 NE2 REMARK 470 SER B 189 CB OG REMARK 470 DG C3001 O5' N2 REMARK 470 DC D4001 O5' REMARK 470 DT D4002 C7 REMARK 470 DT D4016 C7 REMARK 470 DC D4018 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 150 O HOH B 301 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 132 109.53 -56.67 REMARK 500 SER A 155 46.13 -148.05 REMARK 500 GLN A 157 27.46 42.95 REMARK 500 SER B 155 45.77 -148.05 REMARK 500 ASP B 158 33.53 -140.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 117 SG REMARK 620 2 CYS A 120 SG 105.5 REMARK 620 3 CYS A 134 SG 121.5 106.1 REMARK 620 4 CYS A 137 SG 97.9 128.4 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 153 SG REMARK 620 2 CYS A 159 SG 105.2 REMARK 620 3 CYS A 169 SG 96.9 101.3 REMARK 620 4 CYS A 172 SG 113.9 117.2 119.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 120 SG 100.7 REMARK 620 3 CYS B 134 SG 113.8 99.0 REMARK 620 4 CYS B 137 SG 111.8 135.2 95.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 159 SG REMARK 620 2 CYS B 169 SG 126.6 REMARK 620 3 CYS B 172 SG 99.9 98.3 REMARK 620 N 1 2 DBREF 7XV8 A 113 189 UNP P49116 NR2C2_HUMAN 113 189 DBREF 7XV8 B 113 189 UNP P49116 NR2C2_HUMAN 113 189 DBREF 7XV8 C 3001 3018 PDB 7XV8 7XV8 3001 3018 DBREF 7XV8 D 4001 4018 PDB 7XV8 7XV8 4001 4018 SEQRES 1 A 77 VAL VAL GLU TYR CYS VAL VAL CYS GLY ASP LYS ALA SER SEQRES 2 A 77 GLY ARG HIS TYR GLY ALA VAL SER CYS GLU GLY CYS LYS SEQRES 3 A 77 GLY PHE PHE LYS ARG SER VAL ARG LYS ASN LEU THR TYR SEQRES 4 A 77 SER CYS ARG SER ASN GLN ASP CYS ILE ILE ASN LYS HIS SEQRES 5 A 77 HIS ARG ASN ARG CYS GLN PHE CYS ARG LEU LYS LYS CYS SEQRES 6 A 77 LEU GLU MET GLY MET LYS MET GLU SER VAL GLN SER SEQRES 1 B 77 VAL VAL GLU TYR CYS VAL VAL CYS GLY ASP LYS ALA SER SEQRES 2 B 77 GLY ARG HIS TYR GLY ALA VAL SER CYS GLU GLY CYS LYS SEQRES 3 B 77 GLY PHE PHE LYS ARG SER VAL ARG LYS ASN LEU THR TYR SEQRES 4 B 77 SER CYS ARG SER ASN GLN ASP CYS ILE ILE ASN LYS HIS SEQRES 5 B 77 HIS ARG ASN ARG CYS GLN PHE CYS ARG LEU LYS LYS CYS SEQRES 6 B 77 LEU GLU MET GLY MET LYS MET GLU SER VAL GLN SER SEQRES 1 C 18 DG DG DC DA DG DA DG DG DT DC DA DA DA SEQRES 2 C 18 DG DG DT DC DA SEQRES 1 D 18 DC DT DG DA DC DC DT DT DT DG DA DC DC SEQRES 2 D 18 DT DC DT DG DC HET ZN A 200 1 HET ZN A 201 1 HET ZN B 200 1 HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *59(H2 O) HELIX 1 AA1 CYS A 134 LYS A 147 1 14 HELIX 2 AA2 CYS A 169 MET A 180 1 12 HELIX 3 AA3 LYS A 183 VAL A 187 5 5 HELIX 4 AA4 CYS B 134 LYS B 147 1 14 HELIX 5 AA5 ASN B 162 ARG B 166 5 5 HELIX 6 AA6 CYS B 169 MET B 180 1 12 HELIX 7 AA7 LYS B 183 VAL B 187 5 5 SHEET 1 AA1 2 GLY A 126 HIS A 128 0 SHEET 2 AA1 2 ALA A 131 SER A 133 -1 O ALA A 131 N HIS A 128 SHEET 1 AA2 2 GLY B 126 HIS B 128 0 SHEET 2 AA2 2 ALA B 131 SER B 133 -1 O ALA B 131 N HIS B 128 LINK SG CYS A 117 ZN ZN A 200 1555 1555 2.33 LINK SG CYS A 120 ZN ZN A 200 1555 1555 2.03 LINK SG CYS A 134 ZN ZN A 200 1555 1555 2.14 LINK SG CYS A 137 ZN ZN A 200 1555 1555 2.19 LINK SG CYS A 153 ZN ZN A 201 1555 1555 2.05 LINK SG CYS A 159 ZN ZN A 201 1555 1555 2.24 LINK SG CYS A 169 ZN ZN A 201 1555 1555 2.09 LINK SG CYS A 172 ZN ZN A 201 1555 1555 2.06 LINK SG CYS B 117 ZN ZN B 200 1555 1555 2.30 LINK SG CYS B 120 ZN ZN B 200 1555 1555 2.03 LINK SG CYS B 134 ZN ZN B 200 1555 1555 2.37 LINK SG CYS B 137 ZN ZN B 200 1555 1555 2.07 LINK SG CYS B 159 ZN ZN B 201 1555 1555 2.08 LINK SG CYS B 169 ZN ZN B 201 1555 1555 2.20 LINK SG CYS B 172 ZN ZN B 201 1555 1555 2.25 CRYST1 51.874 51.874 241.506 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019277 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004141 0.00000