HEADER TRANSCRIPTION 21-MAY-22 7XVA TITLE CRYSTAL STRUCTURE OF THE HUMAN TR4 LIGAND BINDING DOMAIN IN COMPLEX TITLE 2 WITH THE JAZF1 COREPRESSOR FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP C MEMBER 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORPHAN NUCLEAR RECEPTOR TAK1,ORPHAN NUCLEAR RECEPTOR TR4, COMPND 5 TESTICULAR RECEPTOR 4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR2C2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: JAZF1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS NUCLEAR RECEPTOR, COREPRESSOR, TRANSCRIPTIONAL REGULATION, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,Z.CHEN REVDAT 4 29-NOV-23 7XVA 1 REMARK REVDAT 3 08-MAR-23 7XVA 1 JRNL REVDAT 2 01-FEB-23 7XVA 1 JRNL REVDAT 1 28-DEC-22 7XVA 0 JRNL AUTH Y.LIU,L.MA,M.LI,Z.TIAN,M.YANG,X.WU,X.WANG,G.SHANG,M.XIE, JRNL AUTH 2 Y.CHEN,X.LIU,L.JIANG,W.WU,C.XU,L.XIA,G.LI,S.DAI,Z.CHEN JRNL TITL STRUCTURES OF HUMAN TR4LBD-JAZF1 AND TR4DBD-DNA COMPLEXES JRNL TITL 2 REVEAL THE MOLECULAR BASIS OF TRANSCRIPTIONAL REGULATION. JRNL REF NUCLEIC ACIDS RES. V. 51 1443 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 36651297 JRNL DOI 10.1093/NAR/GKAC1259 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 24001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 894 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 119 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00200 REMARK 3 B22 (A**2) : -0.00200 REMARK 3 B33 (A**2) : 0.00500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.955 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1923 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1776 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2600 ; 1.583 ; 1.638 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4077 ; 1.429 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.434 ;22.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;15.117 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.073 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 262 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2158 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 427 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 50 ; 0.242 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 968 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 981 ; 2.035 ; 2.057 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 981 ; 2.034 ; 2.058 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1214 ; 3.184 ; 3.038 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1215 ; 3.183 ; 3.041 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 941 ; 2.724 ; 2.138 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 941 ; 2.721 ; 2.138 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1386 ; 4.204 ; 3.114 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1387 ; 4.203 ; 3.116 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.856 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3P0U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, AMMONIUM SULFATE, SODIUM REMARK 280 ACETATE, MPD, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.18250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.77375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.59125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.18250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 24.59125 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.77375 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 76.85100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 341 REMARK 465 SER A 342 REMARK 465 ILE A 343 REMARK 465 HIS A 344 REMARK 465 VAL A 345 REMARK 465 ILE A 346 REMARK 465 SER A 347 REMARK 465 ARG A 348 REMARK 465 ASP A 349 REMARK 465 GLN A 350 REMARK 465 SER A 351 REMARK 465 THR A 352 REMARK 465 PRO A 353 REMARK 465 ILE A 354 REMARK 465 ILE A 355 REMARK 465 GLU A 356 REMARK 465 VAL A 357 REMARK 465 ILE A 455 REMARK 465 GLN A 456 REMARK 465 GLU A 457 REMARK 465 ASP A 458 REMARK 465 LYS A 459 REMARK 465 LEU A 460 REMARK 465 SER A 461 REMARK 465 GLY A 462 REMARK 465 ASP A 463 REMARK 465 ILE A 567 REMARK 465 GLY A 568 REMARK 465 LEU A 596 REMARK 465 GLU B 74 REMARK 465 SER B 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 SER A 363 OG REMARK 470 LYS A 370 NZ REMARK 470 LEU A 381 CB CG CD1 CD2 REMARK 470 ASP A 413 CG OD1 OD2 REMARK 470 HIS A 450 O ND1 CD2 CE1 NE2 REMARK 470 LEU A 451 O CD1 CD2 REMARK 470 GLN A 452 O OE1 NE2 REMARK 470 ASN A 453 O CB CG OD1 ND2 REMARK 470 SER A 454 CA C O CB OG REMARK 470 ARG A 464 N CB CG CD NE CZ NH1 REMARK 470 ARG A 464 NH2 REMARK 470 ILE A 465 CB CG1 CG2 CD1 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLN A 467 OE1 NE2 REMARK 470 VAL A 468 CG1 CG2 REMARK 470 PRO A 506 O REMARK 470 GLY A 507 O REMARK 470 LEU A 508 CD1 CD2 REMARK 470 THR A 509 O CB OG1 CG2 REMARK 470 SER A 510 CB OG REMARK 470 SER A 512 OG REMARK 470 LYS A 516 CG CD CE NZ REMARK 470 PHE A 517 CD1 CE1 REMARK 470 LYS A 520 CE NZ REMARK 470 GLU A 535 CG CD OE1 OE2 REMARK 470 LEU A 561 CD1 CD2 REMARK 470 THR A 564 OG1 CG2 REMARK 470 LEU A 566 O CD1 REMARK 470 ASN A 569 CG OD1 ND2 REMARK 470 VAL A 570 O REMARK 470 GLN B 51 CB CG CD OE1 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 71 NH1 NH2 REMARK 470 GLU B 72 O CB CG CD OE1 OE2 REMARK 470 GLN B 73 O CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 415 CB - CA - C ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 369 83.48 -150.65 REMARK 500 SER A 375 179.83 179.24 REMARK 500 LEU A 381 122.14 -37.72 REMARK 500 PHE A 501 35.17 -97.37 REMARK 500 LEU A 508 154.98 -46.04 REMARK 500 SER A 510 55.04 -114.97 REMARK 500 ASP A 536 78.08 -101.94 REMARK 500 PHE A 563 -80.53 -129.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 711 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 6.75 ANGSTROMS DBREF 7XVA A 341 596 UNP P49116 NR2C2_HUMAN 341 596 DBREF 7XVA B 51 75 UNP C9JGY8 C9JGY8_HUMAN 27 51 SEQRES 1 A 256 GLY SER ILE HIS VAL ILE SER ARG ASP GLN SER THR PRO SEQRES 2 A 256 ILE ILE GLU VAL GLU GLY PRO LEU LEU SER ASP THR HIS SEQRES 3 A 256 VAL THR PHE LYS LEU THR MET PRO SER PRO MET PRO GLU SEQRES 4 A 256 TYR LEU ASN VAL HIS TYR ILE CYS GLU SER ALA SER ARG SEQRES 5 A 256 LEU LEU PHE LEU SER MET HIS TRP ALA ARG SER ILE PRO SEQRES 6 A 256 ALA PHE GLN ALA LEU GLY GLN ASP CYS ASN THR SER LEU SEQRES 7 A 256 VAL ARG ALA CYS TRP ASN GLU LEU PHE THR LEU GLY LEU SEQRES 8 A 256 ALA GLN CYS ALA GLN VAL MET SER LEU SER THR ILE LEU SEQRES 9 A 256 ALA ALA ILE VAL ASN HIS LEU GLN ASN SER ILE GLN GLU SEQRES 10 A 256 ASP LYS LEU SER GLY ASP ARG ILE LYS GLN VAL MET GLU SEQRES 11 A 256 HIS ILE TRP LYS LEU GLN GLU PHE CYS ASN SER MET ALA SEQRES 12 A 256 LYS LEU ASP ILE ASP GLY TYR GLU TYR ALA TYR LEU LYS SEQRES 13 A 256 ALA ILE VAL LEU PHE SER PRO ASP HIS PRO GLY LEU THR SEQRES 14 A 256 SER THR SER GLN ILE GLU LYS PHE GLN GLU LYS ALA GLN SEQRES 15 A 256 MET GLU LEU GLN ASP TYR VAL GLN LYS THR TYR SER GLU SEQRES 16 A 256 ASP THR TYR ARG LEU ALA ARG ILE LEU VAL ARG LEU PRO SEQRES 17 A 256 ALA LEU ARG LEU MET SER SER ASN ILE THR GLU GLU LEU SEQRES 18 A 256 PHE PHE THR GLY LEU ILE GLY ASN VAL SER ILE ASP SER SEQRES 19 A 256 ILE ILE PRO TYR ILE LEU LYS MET GLU THR ALA GLU TYR SEQRES 20 A 256 ASN GLY GLN ILE THR GLY ALA SER LEU SEQRES 1 B 25 GLN GLN PRO THR TYR VAL ALA LEU SER TYR ILE ASN ARG SEQRES 2 B 25 PHE MET THR ASP ALA ALA ARG ARG GLU GLN GLU SER FORMUL 3 HOH *119(H2 O) HELIX 1 AA1 SER A 363 THR A 368 5 6 HELIX 2 AA2 ASN A 382 SER A 403 1 22 HELIX 3 AA3 ILE A 404 LEU A 410 1 7 HELIX 4 AA4 GLY A 411 CYS A 434 1 24 HELIX 5 AA5 SER A 439 HIS A 450 1 12 HELIX 6 AA6 ILE A 465 LEU A 485 1 21 HELIX 7 AA7 ASP A 488 PHE A 501 1 14 HELIX 8 AA8 SER A 510 TYR A 533 1 24 HELIX 9 AA9 TYR A 538 VAL A 545 1 8 HELIX 10 AB1 ARG A 546 ARG A 551 1 6 HELIX 11 AB2 SER A 554 PHE A 563 1 10 HELIX 12 AB3 SER A 571 MET A 582 1 12 HELIX 13 AB4 GLU A 583 ALA A 594 1 12 HELIX 14 AB5 TYR B 55 GLU B 72 1 18 CRYST1 76.851 76.851 98.365 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013012 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010166 0.00000