HEADER TRANSCRIPTION/INHIBITOR 25-MAY-22 7XVY TITLE HUMAN ESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN COMPLEX WITH S- TITLE 2 DPN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER-BETA,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 12 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 13 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 14 EC: 2.3.1.48; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR2, ESTRB, NR3A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P1; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS INHIBITOR, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.FURUYA,C.HANDA REVDAT 3 29-NOV-23 7XVY 1 REMARK REVDAT 2 27-JUL-22 7XVY 1 JRNL REVDAT 1 20-JUL-22 7XVY 0 JRNL AUTH C.HANDA,Y.YAMAZAKI,S.YONEKUBO,N.FURUYA,T.MOMOSE,T.OZAWA, JRNL AUTH 2 T.FURUISHI,K.FUKUZAWA,E.YONEMOCHI JRNL TITL EVALUATING THE CORRELATION OF BINDING AFFINITIES BETWEEN JRNL TITL 2 ISOTHERMAL TITRATION CALORIMETRY AND FRAGMENT MOLECULAR JRNL TITL 3 ORBITAL METHOD OF ESTROGEN RECEPTOR BETA WITH JRNL TITL 4 DIARYLPROPIONITRILE (DPN) OR DPN DERIVATIVES. JRNL REF J.STEROID BIOCHEM.MOL.BIOL. V. 222 06152 2022 JRNL REFN ISSN 0960-0760 JRNL PMID 35810932 JRNL DOI 10.1016/J.JSBMB.2022.106152 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0349 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 69667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.869 REMARK 3 FREE R VALUE TEST SET COUNT : 3392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3543 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18700 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : 0.01700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.563 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3685 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3527 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4985 ; 1.738 ; 1.614 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8199 ; 0.583 ; 1.547 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 5.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ;12.634 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 669 ;16.108 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4020 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 660 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 809 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 42 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1838 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 212 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1871 ; 2.225 ; 2.039 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1872 ; 2.225 ; 2.039 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2337 ; 3.099 ; 3.043 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2338 ; 3.099 ; 3.044 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1814 ; 3.351 ; 2.383 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1815 ; 3.350 ; 2.383 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2647 ; 4.996 ; 3.433 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2648 ; 4.995 ; 3.432 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300026855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69739 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 46.443 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2GIU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG3350, 100 MM BISTRIS PH6.5, REMARK 280 200 MM MAGNESIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.09700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.66400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.50700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.66400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.09700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.50700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 256 REMARK 465 PRO A 257 REMARK 465 LEU A 258 REMARK 465 GLY A 259 REMARK 465 SER A 260 REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 PRO A 285 REMARK 465 SER A 286 REMARK 465 ALA A 287 REMARK 465 PRO A 288 REMARK 465 PHE A 289 REMARK 465 THR A 290 REMARK 465 MET A 410 REMARK 465 TYR A 411 REMARK 465 PRO A 412 REMARK 465 LEU A 413 REMARK 465 VAL A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ASP A 419 REMARK 465 ALA A 420 REMARK 465 VAL A 499 REMARK 465 LEU A 500 REMARK 465 ASP A 501 REMARK 465 ASP A 502 REMARK 465 GLY B 256 REMARK 465 PRO B 257 REMARK 465 LEU B 258 REMARK 465 GLY B 259 REMARK 465 SER B 260 REMARK 465 ASP B 261 REMARK 465 ALA B 262 REMARK 465 MET B 410 REMARK 465 TYR B 411 REMARK 465 PRO B 412 REMARK 465 LEU B 413 REMARK 465 VAL B 414 REMARK 465 THR B 415 REMARK 465 ALA B 416 REMARK 465 THR B 417 REMARK 465 GLN B 418 REMARK 465 ASP B 419 REMARK 465 ALA B 420 REMARK 465 HIS B 498 REMARK 465 VAL B 499 REMARK 465 LEU B 500 REMARK 465 ASP B 501 REMARK 465 ASP B 502 REMARK 465 SER C 601 REMARK 465 GLY C 602 REMARK 465 SER D 601 REMARK 465 GLY D 602 REMARK 465 SER D 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 263 CG CD1 CD2 REMARK 470 GLN A 267 CG CD OE1 NE2 REMARK 470 ARG A 284 CA C O CB CG CD NE REMARK 470 ARG A 284 CZ NH1 NH2 REMARK 470 GLU A 291 CB CG CD OE1 OE2 REMARK 470 ARG A 329 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 337 OE1 OE2 REMARK 470 MET A 379 CE REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 LEU A 477 CD1 CD2 REMARK 470 LYS A 480 CD CE NZ REMARK 470 VAL A 484 CG1 CG2 REMARK 470 LEU A 495 CD1 CD2 REMARK 470 HIS B 279 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 300 CE NZ REMARK 470 ASP B 365 CG OD1 OD2 REMARK 470 LEU B 374 CD1 CD2 REMARK 470 GLU B 375 CG CD OE1 OE2 REMARK 470 MET B 379 CE REMARK 470 ARG B 386 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 389 CG CD OE1 OE2 REMARK 470 LYS B 391 CE NZ REMARK 470 SER B 409 CB OG REMARK 470 SER B 423 CB OG REMARK 470 LEU B 429 CG CD1 CD2 REMARK 470 LYS B 443 CD CE NZ REMARK 470 LEU B 462 CG CD1 CD2 REMARK 470 ARG B 466 NH1 NH2 REMARK 470 LYS B 471 CE NZ REMARK 470 LYS B 480 CD CE NZ REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 ASN B 483 CB CG OD1 ND2 REMARK 470 VAL B 484 CG1 CG2 REMARK 470 VAL B 485 CB CG1 CG2 REMARK 470 VAL B 487 CG1 CG2 REMARK 470 LEU B 495 CD1 CD2 REMARK 470 ASN B 496 OD1 REMARK 470 SER C 603 N CB OG REMARK 470 HIS D 604 CG ND1 CD2 CE1 NE2 REMARK 470 THR D 613 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H SER B 323 HG SER B 422 1.24 REMARK 500 H SER A 323 HG SER A 422 1.27 REMARK 500 HB3 LEU B 429 O HOH B 817 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 460 CG - SD - CE ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 283 70.85 56.06 REMARK 500 ASN B 483 30.58 72.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 388 0.08 SIDE CHAIN REMARK 500 ARG A 466 0.14 SIDE CHAIN REMARK 500 ARG B 329 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7XVY A 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 7XVY B 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 7XVY C 601 613 UNP Q15788 NCOA1_HUMAN 628 640 DBREF 7XVY D 601 613 UNP Q15788 NCOA1_HUMAN 628 640 SEQADV 7XVY GLY A 256 UNP Q92731 EXPRESSION TAG SEQADV 7XVY PRO A 257 UNP Q92731 EXPRESSION TAG SEQADV 7XVY LEU A 258 UNP Q92731 EXPRESSION TAG SEQADV 7XVY GLY A 259 UNP Q92731 EXPRESSION TAG SEQADV 7XVY SER A 260 UNP Q92731 EXPRESSION TAG SEQADV 7XVY SER A 334 UNP Q92731 CYS 334 ENGINEERED MUTATION SEQADV 7XVY SER A 369 UNP Q92731 CYS 369 ENGINEERED MUTATION SEQADV 7XVY SER A 481 UNP Q92731 CYS 481 ENGINEERED MUTATION SEQADV 7XVY ASP A 501 UNP Q92731 EXPRESSION TAG SEQADV 7XVY ASP A 502 UNP Q92731 EXPRESSION TAG SEQADV 7XVY GLY B 256 UNP Q92731 EXPRESSION TAG SEQADV 7XVY PRO B 257 UNP Q92731 EXPRESSION TAG SEQADV 7XVY LEU B 258 UNP Q92731 EXPRESSION TAG SEQADV 7XVY GLY B 259 UNP Q92731 EXPRESSION TAG SEQADV 7XVY SER B 260 UNP Q92731 EXPRESSION TAG SEQADV 7XVY SER B 334 UNP Q92731 CYS 334 ENGINEERED MUTATION SEQADV 7XVY SER B 369 UNP Q92731 CYS 369 ENGINEERED MUTATION SEQADV 7XVY SER B 481 UNP Q92731 CYS 481 ENGINEERED MUTATION SEQADV 7XVY ASP B 501 UNP Q92731 EXPRESSION TAG SEQADV 7XVY ASP B 502 UNP Q92731 EXPRESSION TAG SEQADV 7XVY SER C 601 UNP Q15788 GLN 628 CONFLICT SEQADV 7XVY GLY C 602 UNP Q15788 THR 629 CONFLICT SEQADV 7XVY SER D 601 UNP Q15788 GLN 628 CONFLICT SEQADV 7XVY GLY D 602 UNP Q15788 THR 629 CONFLICT SEQRES 1 A 247 GLY PRO LEU GLY SER ASP ALA LEU SER PRO GLU GLN LEU SEQRES 2 A 247 VAL LEU THR LEU LEU GLU ALA GLU PRO PRO HIS VAL LEU SEQRES 3 A 247 ILE SER ARG PRO SER ALA PRO PHE THR GLU ALA SER MET SEQRES 4 A 247 MET MET SER LEU THR LYS LEU ALA ASP LYS GLU LEU VAL SEQRES 5 A 247 HIS MET ILE SER TRP ALA LYS LYS ILE PRO GLY PHE VAL SEQRES 6 A 247 GLU LEU SER LEU PHE ASP GLN VAL ARG LEU LEU GLU SER SEQRES 7 A 247 SER TRP MET GLU VAL LEU MET MET GLY LEU MET TRP ARG SEQRES 8 A 247 SER ILE ASP HIS PRO GLY LYS LEU ILE PHE ALA PRO ASP SEQRES 9 A 247 LEU VAL LEU ASP ARG ASP GLU GLY LYS SER VAL GLU GLY SEQRES 10 A 247 ILE LEU GLU ILE PHE ASP MET LEU LEU ALA THR THR SER SEQRES 11 A 247 ARG PHE ARG GLU LEU LYS LEU GLN HIS LYS GLU TYR LEU SEQRES 12 A 247 CYS VAL LYS ALA MET ILE LEU LEU ASN SER SER MET TYR SEQRES 13 A 247 PRO LEU VAL THR ALA THR GLN ASP ALA ASP SER SER ARG SEQRES 14 A 247 LYS LEU ALA HIS LEU LEU ASN ALA VAL THR ASP ALA LEU SEQRES 15 A 247 VAL TRP VAL ILE ALA LYS SER GLY ILE SER SER GLN GLN SEQRES 16 A 247 GLN SER MET ARG LEU ALA ASN LEU LEU MET LEU LEU SER SEQRES 17 A 247 HIS VAL ARG HIS ALA SER ASN LYS GLY MET GLU HIS LEU SEQRES 18 A 247 LEU ASN MET LYS SER LYS ASN VAL VAL PRO VAL TYR ASP SEQRES 19 A 247 LEU LEU LEU GLU MET LEU ASN ALA HIS VAL LEU ASP ASP SEQRES 1 B 247 GLY PRO LEU GLY SER ASP ALA LEU SER PRO GLU GLN LEU SEQRES 2 B 247 VAL LEU THR LEU LEU GLU ALA GLU PRO PRO HIS VAL LEU SEQRES 3 B 247 ILE SER ARG PRO SER ALA PRO PHE THR GLU ALA SER MET SEQRES 4 B 247 MET MET SER LEU THR LYS LEU ALA ASP LYS GLU LEU VAL SEQRES 5 B 247 HIS MET ILE SER TRP ALA LYS LYS ILE PRO GLY PHE VAL SEQRES 6 B 247 GLU LEU SER LEU PHE ASP GLN VAL ARG LEU LEU GLU SER SEQRES 7 B 247 SER TRP MET GLU VAL LEU MET MET GLY LEU MET TRP ARG SEQRES 8 B 247 SER ILE ASP HIS PRO GLY LYS LEU ILE PHE ALA PRO ASP SEQRES 9 B 247 LEU VAL LEU ASP ARG ASP GLU GLY LYS SER VAL GLU GLY SEQRES 10 B 247 ILE LEU GLU ILE PHE ASP MET LEU LEU ALA THR THR SER SEQRES 11 B 247 ARG PHE ARG GLU LEU LYS LEU GLN HIS LYS GLU TYR LEU SEQRES 12 B 247 CYS VAL LYS ALA MET ILE LEU LEU ASN SER SER MET TYR SEQRES 13 B 247 PRO LEU VAL THR ALA THR GLN ASP ALA ASP SER SER ARG SEQRES 14 B 247 LYS LEU ALA HIS LEU LEU ASN ALA VAL THR ASP ALA LEU SEQRES 15 B 247 VAL TRP VAL ILE ALA LYS SER GLY ILE SER SER GLN GLN SEQRES 16 B 247 GLN SER MET ARG LEU ALA ASN LEU LEU MET LEU LEU SER SEQRES 17 B 247 HIS VAL ARG HIS ALA SER ASN LYS GLY MET GLU HIS LEU SEQRES 18 B 247 LEU ASN MET LYS SER LYS ASN VAL VAL PRO VAL TYR ASP SEQRES 19 B 247 LEU LEU LEU GLU MET LEU ASN ALA HIS VAL LEU ASP ASP SEQRES 1 C 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR SEQRES 1 D 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR HET I0K A 601 31 HET I0K B 601 31 HETNAM I0K (2~{S})-2,3-BIS(4-HYDROXYPHENYL)PROPANENITRILE FORMUL 5 I0K 2(C15 H13 N O2) FORMUL 7 HOH *320(H2 O) HELIX 1 AA1 SER A 264 GLU A 276 1 13 HELIX 2 AA2 ALA A 292 ILE A 316 1 25 HELIX 3 AA3 GLY A 318 LEU A 322 5 5 HELIX 4 AA4 SER A 323 ILE A 348 1 26 HELIX 5 AA5 ASP A 363 LYS A 368 1 6 HELIX 6 AA6 GLY A 372 LEU A 390 1 19 HELIX 7 AA7 GLN A 393 ASN A 407 1 15 HELIX 8 AA8 SER A 422 LYS A 443 1 22 HELIX 9 AA9 SER A 447 LYS A 482 1 36 HELIX 10 AB1 TYR A 488 ALA A 497 1 10 HELIX 11 AB2 SER B 264 GLU B 276 1 13 HELIX 12 AB3 THR B 290 LYS B 315 1 26 HELIX 13 AB4 GLY B 318 LEU B 322 5 5 HELIX 14 AB5 SER B 323 SER B 347 1 25 HELIX 15 AB6 ASP B 365 VAL B 370 5 6 HELIX 16 AB7 GLY B 372 LEU B 390 1 19 HELIX 17 AB8 GLN B 393 ASN B 407 1 15 HELIX 18 AB9 SER B 422 SER B 444 1 23 HELIX 19 AC1 SER B 447 LEU B 461 1 15 HELIX 20 AC2 LEU B 461 LYS B 482 1 22 HELIX 21 AC3 TYR B 488 ALA B 497 1 10 HELIX 22 AC4 HIS C 604 THR C 612 1 9 HELIX 23 AC5 LYS D 605 THR D 612 1 8 SHEET 1 AA1 2 LEU A 354 ALA A 357 0 SHEET 2 AA1 2 LEU A 360 LEU A 362 -1 O LEU A 362 N LEU A 354 SHEET 1 AA2 2 LYS B 353 ALA B 357 0 SHEET 2 AA2 2 LEU B 360 ASP B 363 -1 O LEU B 362 N LEU B 354 CRYST1 52.194 89.014 101.328 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011234 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009869 0.00000