HEADER TRANSCRIPTION/INHIBITOR 27-MAY-22 7XWR TITLE HUMAN ESTROGEN RECEPTOR BETA LIGAND-BINDING DOMAIN IN COMPLEX WITH TITLE 2 (S)-2-(2-CHLORO-4-HYDROXYPHENYL)-3-(4-HYDROXYPHENYL)PROPANENITRILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN; COMPND 5 SYNONYM: ER-BETA,NUCLEAR RECEPTOR SUBFAMILY 3 GROUP A MEMBER 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SRC PEPTIDE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR2, ESTRB, NR3A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX6P1; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS INHIBITOR, TRANSCRIPTION, TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.FURUYA,C.HANDA REVDAT 3 29-NOV-23 7XWR 1 REMARK REVDAT 2 27-JUL-22 7XWR 1 TITLE JRNL REVDAT 1 20-JUL-22 7XWR 0 JRNL AUTH C.HANDA,Y.YAMAZAKI,S.YONEKUBO,N.FURUYA,T.MOMOSE,T.OZAWA, JRNL AUTH 2 T.FURUISHI,K.FUKUZAWA,E.YONEMOCHI JRNL TITL EVALUATING THE CORRELATION OF BINDING AFFINITIES BETWEEN JRNL TITL 2 ISOTHERMAL TITRATION CALORIMETRY AND FRAGMENT MOLECULAR JRNL TITL 3 ORBITAL METHOD OF ESTROGEN RECEPTOR BETA WITH JRNL TITL 4 DIARYLPROPIONITRILE (DPN) OR DPN DERIVATIVES. JRNL REF J.STEROID BIOCHEM.MOL.BIOL. V. 222 06152 2022 JRNL REFN ISSN 0960-0760 JRNL PMID 35810932 JRNL DOI 10.1016/J.JSBMB.2022.106152 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 25840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.008 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3760 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.57900 REMARK 3 B22 (A**2) : -9.38300 REMARK 3 B33 (A**2) : 5.80400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.343 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.269 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.339 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.877 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3627 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3532 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4897 ; 1.555 ; 1.617 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8139 ; 1.289 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.291 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;38.882 ;22.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 665 ;16.102 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3955 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 876 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 44 ; 0.263 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1768 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 80 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1853 ; 2.245 ; 2.784 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1852 ; 2.244 ; 2.783 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2304 ; 3.581 ; 4.155 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2305 ; 3.581 ; 4.155 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1774 ; 2.432 ; 2.972 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1775 ; 2.432 ; 2.972 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2593 ; 3.937 ; 4.355 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2594 ; 3.936 ; 4.354 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7XWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAY-22. REMARK 100 THE DEPOSITION ID IS D_1300029785. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25917 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 46.633 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.45100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 2.18600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2GIU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG3350, 100 MM BISTRIS PH6.5, REMARK 280 200 MM MAGNESIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.21800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.76600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.61300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.76600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.21800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.61300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 256 REMARK 465 PRO A 257 REMARK 465 LEU A 258 REMARK 465 GLY A 259 REMARK 465 SER A 260 REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 PRO A 285 REMARK 465 SER A 286 REMARK 465 ALA A 287 REMARK 465 PRO A 288 REMARK 465 PHE A 289 REMARK 465 THR A 290 REMARK 465 MET A 410 REMARK 465 TYR A 411 REMARK 465 PRO A 412 REMARK 465 LEU A 413 REMARK 465 VAL A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ASP A 419 REMARK 465 ALA A 420 REMARK 465 VAL A 499 REMARK 465 LEU A 500 REMARK 465 ASP A 501 REMARK 465 ASP A 502 REMARK 465 GLY B 256 REMARK 465 PRO B 257 REMARK 465 LEU B 258 REMARK 465 GLY B 259 REMARK 465 SER B 260 REMARK 465 ASP B 261 REMARK 465 ALA B 262 REMARK 465 MET B 410 REMARK 465 TYR B 411 REMARK 465 PRO B 412 REMARK 465 LEU B 413 REMARK 465 VAL B 414 REMARK 465 THR B 415 REMARK 465 ALA B 416 REMARK 465 THR B 417 REMARK 465 GLN B 418 REMARK 465 ASP B 419 REMARK 465 ALA B 420 REMARK 465 VAL B 499 REMARK 465 LEU B 500 REMARK 465 ASP B 501 REMARK 465 ASP B 502 REMARK 465 SER C 601 REMARK 465 GLY C 602 REMARK 465 SER D 601 REMARK 465 GLY D 602 REMARK 465 SER D 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 270 CG CD1 CD2 REMARK 470 THR A 271 OG1 CG2 REMARK 470 HIS A 279 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 291 CB CG CD OE1 OE2 REMARK 470 MET A 295 CE REMARK 470 LYS A 314 CE NZ REMARK 470 GLU A 321 CD OE1 OE2 REMARK 470 LYS A 353 CB CG CD CE NZ REMARK 470 MET A 379 CE REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 SER A 423 OG REMARK 470 ARG A 424 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 425 CB CG CD CE NZ REMARK 470 LEU A 429 CD1 CD2 REMARK 470 THR A 434 CG2 REMARK 470 LEU A 461 CD1 CD2 REMARK 470 HIS A 467 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 LEU A 477 CD1 CD2 REMARK 470 MET A 479 CG SD CE REMARK 470 VAL A 487 CB CG1 CG2 REMARK 470 LEU A 495 CG CD1 CD2 REMARK 470 LEU B 263 CB CG CD1 CD2 REMARK 470 LEU B 270 CD1 CD2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 LYS B 314 CE NZ REMARK 470 LEU B 324 CD1 CD2 REMARK 470 MET B 344 CE REMARK 470 ASP B 363 CB CG OD1 OD2 REMARK 470 ASP B 365 CG OD1 OD2 REMARK 470 LEU B 374 CG CD1 CD2 REMARK 470 GLU B 389 CG CD OE1 OE2 REMARK 470 ARG B 424 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS B 443 CG CD CE NZ REMARK 470 MET B 460 CE REMARK 470 LYS B 471 CG CD CE NZ REMARK 470 ASN B 478 OD1 ND2 REMARK 470 ASN B 483 CB CG OD1 ND2 REMARK 470 VAL B 485 CB CG1 CG2 REMARK 470 VAL B 487 CG1 CG2 REMARK 470 ASP B 489 CB CG OD1 OD2 REMARK 470 MET B 494 CE REMARK 470 LEU B 495 CD1 CD2 REMARK 470 GLN C 608 OE1 NE2 REMARK 470 HIS D 604 CG ND1 CD2 CE1 NE2 REMARK 470 THR D 612 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 401 O HOH A 703 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 488 163.01 -45.76 REMARK 500 ASP A 489 -70.78 -53.39 REMARK 500 HIS B 350 64.14 -157.28 REMARK 500 ARG B 364 -38.08 -38.62 REMARK 500 LYS B 368 -35.78 -37.45 REMARK 500 SER B 447 157.41 -47.71 REMARK 500 ASN B 483 -3.73 91.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XWR A 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 7XWR B 261 500 UNP Q92731 ESR2_HUMAN 261 500 DBREF 7XWR C 601 613 PDB 7XWR 7XWR 601 613 DBREF 7XWR D 601 613 PDB 7XWR 7XWR 601 613 SEQADV 7XWR GLY A 256 UNP Q92731 EXPRESSION TAG SEQADV 7XWR PRO A 257 UNP Q92731 EXPRESSION TAG SEQADV 7XWR LEU A 258 UNP Q92731 EXPRESSION TAG SEQADV 7XWR GLY A 259 UNP Q92731 EXPRESSION TAG SEQADV 7XWR SER A 260 UNP Q92731 EXPRESSION TAG SEQADV 7XWR SER A 334 UNP Q92731 CYS 334 ENGINEERED MUTATION SEQADV 7XWR SER A 369 UNP Q92731 CYS 369 ENGINEERED MUTATION SEQADV 7XWR SER A 481 UNP Q92731 CYS 481 ENGINEERED MUTATION SEQADV 7XWR ASP A 501 UNP Q92731 EXPRESSION TAG SEQADV 7XWR ASP A 502 UNP Q92731 EXPRESSION TAG SEQADV 7XWR GLY B 256 UNP Q92731 EXPRESSION TAG SEQADV 7XWR PRO B 257 UNP Q92731 EXPRESSION TAG SEQADV 7XWR LEU B 258 UNP Q92731 EXPRESSION TAG SEQADV 7XWR GLY B 259 UNP Q92731 EXPRESSION TAG SEQADV 7XWR SER B 260 UNP Q92731 EXPRESSION TAG SEQADV 7XWR SER B 334 UNP Q92731 CYS 334 ENGINEERED MUTATION SEQADV 7XWR SER B 369 UNP Q92731 CYS 369 ENGINEERED MUTATION SEQADV 7XWR SER B 481 UNP Q92731 CYS 481 ENGINEERED MUTATION SEQADV 7XWR ASP B 501 UNP Q92731 EXPRESSION TAG SEQADV 7XWR ASP B 502 UNP Q92731 EXPRESSION TAG SEQRES 1 A 247 GLY PRO LEU GLY SER ASP ALA LEU SER PRO GLU GLN LEU SEQRES 2 A 247 VAL LEU THR LEU LEU GLU ALA GLU PRO PRO HIS VAL LEU SEQRES 3 A 247 ILE SER ARG PRO SER ALA PRO PHE THR GLU ALA SER MET SEQRES 4 A 247 MET MET SER LEU THR LYS LEU ALA ASP LYS GLU LEU VAL SEQRES 5 A 247 HIS MET ILE SER TRP ALA LYS LYS ILE PRO GLY PHE VAL SEQRES 6 A 247 GLU LEU SER LEU PHE ASP GLN VAL ARG LEU LEU GLU SER SEQRES 7 A 247 SER TRP MET GLU VAL LEU MET MET GLY LEU MET TRP ARG SEQRES 8 A 247 SER ILE ASP HIS PRO GLY LYS LEU ILE PHE ALA PRO ASP SEQRES 9 A 247 LEU VAL LEU ASP ARG ASP GLU GLY LYS SER VAL GLU GLY SEQRES 10 A 247 ILE LEU GLU ILE PHE ASP MET LEU LEU ALA THR THR SER SEQRES 11 A 247 ARG PHE ARG GLU LEU LYS LEU GLN HIS LYS GLU TYR LEU SEQRES 12 A 247 CYS VAL LYS ALA MET ILE LEU LEU ASN SER SER MET TYR SEQRES 13 A 247 PRO LEU VAL THR ALA THR GLN ASP ALA ASP SER SER ARG SEQRES 14 A 247 LYS LEU ALA HIS LEU LEU ASN ALA VAL THR ASP ALA LEU SEQRES 15 A 247 VAL TRP VAL ILE ALA LYS SER GLY ILE SER SER GLN GLN SEQRES 16 A 247 GLN SER MET ARG LEU ALA ASN LEU LEU MET LEU LEU SER SEQRES 17 A 247 HIS VAL ARG HIS ALA SER ASN LYS GLY MET GLU HIS LEU SEQRES 18 A 247 LEU ASN MET LYS SER LYS ASN VAL VAL PRO VAL TYR ASP SEQRES 19 A 247 LEU LEU LEU GLU MET LEU ASN ALA HIS VAL LEU ASP ASP SEQRES 1 B 247 GLY PRO LEU GLY SER ASP ALA LEU SER PRO GLU GLN LEU SEQRES 2 B 247 VAL LEU THR LEU LEU GLU ALA GLU PRO PRO HIS VAL LEU SEQRES 3 B 247 ILE SER ARG PRO SER ALA PRO PHE THR GLU ALA SER MET SEQRES 4 B 247 MET MET SER LEU THR LYS LEU ALA ASP LYS GLU LEU VAL SEQRES 5 B 247 HIS MET ILE SER TRP ALA LYS LYS ILE PRO GLY PHE VAL SEQRES 6 B 247 GLU LEU SER LEU PHE ASP GLN VAL ARG LEU LEU GLU SER SEQRES 7 B 247 SER TRP MET GLU VAL LEU MET MET GLY LEU MET TRP ARG SEQRES 8 B 247 SER ILE ASP HIS PRO GLY LYS LEU ILE PHE ALA PRO ASP SEQRES 9 B 247 LEU VAL LEU ASP ARG ASP GLU GLY LYS SER VAL GLU GLY SEQRES 10 B 247 ILE LEU GLU ILE PHE ASP MET LEU LEU ALA THR THR SER SEQRES 11 B 247 ARG PHE ARG GLU LEU LYS LEU GLN HIS LYS GLU TYR LEU SEQRES 12 B 247 CYS VAL LYS ALA MET ILE LEU LEU ASN SER SER MET TYR SEQRES 13 B 247 PRO LEU VAL THR ALA THR GLN ASP ALA ASP SER SER ARG SEQRES 14 B 247 LYS LEU ALA HIS LEU LEU ASN ALA VAL THR ASP ALA LEU SEQRES 15 B 247 VAL TRP VAL ILE ALA LYS SER GLY ILE SER SER GLN GLN SEQRES 16 B 247 GLN SER MET ARG LEU ALA ASN LEU LEU MET LEU LEU SER SEQRES 17 B 247 HIS VAL ARG HIS ALA SER ASN LYS GLY MET GLU HIS LEU SEQRES 18 B 247 LEU ASN MET LYS SER LYS ASN VAL VAL PRO VAL TYR ASP SEQRES 19 B 247 LEU LEU LEU GLU MET LEU ASN ALA HIS VAL LEU ASP ASP SEQRES 1 C 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR SEQRES 1 D 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR HET I2B A 601 31 HET I2B B 601 31 HETNAM I2B (2~{S})-2-(2-CHLORANYL-4-OXIDANYL-PHENYL)-3-(4- HETNAM 2 I2B HYDROXYPHENYL)PROPANENITRILE FORMUL 5 I2B 2(C15 H12 CL N O2) FORMUL 7 HOH *25(H2 O) HELIX 1 AA1 SER A 264 ALA A 275 1 12 HELIX 2 AA2 ALA A 292 LYS A 315 1 24 HELIX 3 AA3 GLY A 318 LEU A 322 5 5 HELIX 4 AA4 SER A 323 ILE A 348 1 26 HELIX 5 AA5 ASP A 363 LYS A 368 1 6 HELIX 6 AA6 GLY A 372 LEU A 390 1 19 HELIX 7 AA7 GLN A 393 ASN A 407 1 15 HELIX 8 AA8 SER A 422 SER A 444 1 23 HELIX 9 AA9 SER A 447 LEU A 461 1 15 HELIX 10 AB1 LEU A 461 ASN A 483 1 23 HELIX 11 AB2 TYR A 488 ALA A 497 1 10 HELIX 12 AB3 SER B 264 GLU B 276 1 13 HELIX 13 AB4 THR B 290 LYS B 315 1 26 HELIX 14 AB5 GLY B 318 LEU B 322 5 5 HELIX 15 AB6 SER B 323 SER B 347 1 25 HELIX 16 AB7 ASP B 365 VAL B 370 5 6 HELIX 17 AB8 GLY B 372 LEU B 390 1 19 HELIX 18 AB9 GLN B 393 ASN B 407 1 15 HELIX 19 AC1 SER B 422 LYS B 443 1 22 HELIX 20 AC2 SER B 447 LEU B 461 1 15 HELIX 21 AC3 LEU B 461 LYS B 482 1 22 HELIX 22 AC4 TYR B 488 ALA B 497 1 10 HELIX 23 AC5 HIS C 604 THR C 612 1 9 HELIX 24 AC6 LYS D 605 THR D 612 1 8 SHEET 1 AA1 2 LEU A 354 ALA A 357 0 SHEET 2 AA1 2 LEU A 360 LEU A 362 -1 O LEU A 360 N ALA A 357 SHEET 1 AA2 2 LYS B 353 ALA B 357 0 SHEET 2 AA2 2 LEU B 360 ASP B 363 -1 O LEU B 362 N LEU B 354 CRYST1 52.436 89.226 101.532 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009849 0.00000 TER 3342 HIS A 498 TER 6818 HIS B 498 TER 6999 THR C 613 TER 7158 THR D 613 HETATM 7159 N1 I2B A 601 3.088 5.027 12.726 1.00 21.01 N0 HETATM 7160 C4 I2B A 601 1.950 8.274 10.715 1.00 18.17 C0 HETATM 7161 C5 I2B A 601 3.087 8.390 11.695 1.00 20.35 C0 HETATM 7162 C6 I2B A 601 4.062 7.226 11.653 1.00 21.76 C0 HETATM 7163 C7 I2B A 601 3.462 6.007 12.237 1.00 22.16 C0 HETATM 7164 C8 I2B A 601 5.363 7.565 12.362 1.00 22.58 C0 HETATM 7165 C10 I2B A 601 6.936 7.222 14.174 1.00 24.13 C0 HETATM 7166 C13 I2B A 601 6.266 8.457 11.809 1.00 24.73 C0 HETATM 7167 C15 I2B A 601 1.050 8.479 8.487 1.00 17.48 C0 HETATM 7168 O1 I2B A 601 -1.292 8.002 8.145 1.00 19.00 O0 HETATM 7169 C1 I2B A 601 -0.199 8.092 8.957 1.00 17.71 C0 HETATM 7170 C2 I2B A 601 -0.371 7.778 10.283 1.00 17.08 C0 HETATM 7171 C3 I2B A 601 0.698 7.882 11.149 1.00 17.81 C0 HETATM 7172 C9 I2B A 601 5.729 6.941 13.555 1.00 22.68 C0 HETATM 7173 C11 I2B A 601 7.804 8.131 13.594 1.00 24.46 C0 HETATM 7174 O2 I2B A 601 9.022 8.430 14.152 1.00 22.92 O0 HETATM 7175 C12 I2B A 601 7.465 8.756 12.411 1.00 24.41 C0 HETATM 7176 CL1 I2B A 601 5.929 9.287 10.319 1.00 29.84 CL0 HETATM 7177 C14 I2B A 601 2.116 8.561 9.367 1.00 18.09 C0 HETATM 7178 H1 I2B A 601 2.714 8.460 12.598 1.00 20.12 H0 HETATM 7179 H2 I2B A 601 3.569 9.223 11.515 1.00 20.15 H0 HETATM 7180 H3 I2B A 601 4.281 7.027 10.704 1.00 21.71 H0 HETATM 7181 H4 I2B A 601 7.168 6.794 14.982 1.00 23.87 H0 HETATM 7182 H5 I2B A 601 1.169 8.688 7.576 1.00 17.71 H0 HETATM 7183 H6 I2B A 601 -0.963 8.250 7.226 0.00 24.22 H0 HETATM 7184 H7 I2B A 601 -1.222 7.526 10.604 1.00 17.46 H0 HETATM 7185 H8 I2B A 601 0.569 7.682 12.062 1.00 17.75 H0 HETATM 7186 H9 I2B A 601 5.144 6.316 13.949 1.00 23.09 H0 HETATM 7187 H10 I2B A 601 9.409 8.976 13.855 0.00 35.55 H0 HETATM 7188 H11 I2B A 601 8.054 9.366 12.011 1.00 24.43 H0 HETATM 7189 H12 I2B A 601 2.959 8.842 9.051 1.00 17.96 H0 HETATM 7190 N1 I2B B 601 -1.589 18.195 40.026 1.00 20.77 N0 HETATM 7191 C4 I2B B 601 -2.088 14.696 41.710 1.00 19.07 C0 HETATM 7192 C5 I2B B 601 -0.818 14.933 40.907 1.00 20.51 C0 HETATM 7193 C6 I2B B 601 -0.129 16.276 41.077 1.00 20.65 C0 HETATM 7194 C7 I2B B 601 -0.948 17.341 40.473 1.00 22.25 C0 HETATM 7195 C8 I2B B 601 1.257 16.305 40.456 1.00 22.92 C0 HETATM 7196 C10 I2B B 601 2.809 17.105 38.759 1.00 21.69 C0 HETATM 7197 C13 I2B B 601 2.330 15.671 41.076 1.00 25.80 C0 HETATM 7198 C15 I2B B 601 -3.200 13.936 43.733 1.00 17.87 C0 HETATM 7199 O1 I2B B 601 -5.595 13.824 43.808 1.00 18.72 O0 HETATM 7200 C1 I2B B 601 -4.432 14.095 43.134 1.00 18.56 C0 HETATM 7201 C2 I2B B 601 -4.497 14.573 41.836 1.00 19.39 C0 HETATM 7202 C3 I2B B 601 -3.335 14.845 41.131 1.00 19.40 C0 HETATM 7203 C9 I2B B 601 1.531 17.041 39.285 1.00 21.93 C0 HETATM 7204 C11 I2B B 601 3.845 16.444 39.399 1.00 25.28 C0 HETATM 7205 O2 I2B B 601 5.125 16.515 38.900 1.00 27.90 O0 HETATM 7206 C12 I2B B 601 3.615 15.724 40.560 1.00 24.92 C0 HETATM 7207 CL1 I2B B 601 2.076 14.700 42.497 1.00 27.15 CL0 HETATM 7208 C14 I2B B 601 -2.050 14.230 43.015 1.00 19.01 C0 HETATM 7209 H1 I2B B 601 -1.037 14.818 39.958 1.00 20.19 H0 HETATM 7210 H2 I2B B 601 -0.182 14.225 41.136 1.00 20.21 H0 HETATM 7211 H3 I2B B 601 -0.036 16.474 42.046 1.00 21.34 H0 HETATM 7212 H4 I2B B 601 2.980 17.617 37.986 1.00 22.69 H0 HETATM 7213 H5 I2B B 601 -3.140 13.625 44.620 1.00 18.37 H0 HETATM 7214 H6 I2B B 601 -5.275 13.603 44.699 0.00 26.72 H0 HETATM 7215 H7 I2B B 601 -5.336 14.683 41.420 1.00 19.17 H0 HETATM 7216 H8 I2B B 601 -3.398 15.144 40.238 1.00 19.28 H0 HETATM 7217 H9 I2B B 601 0.835 17.515 38.863 1.00 22.30 H0 HETATM 7218 H10 I2B B 601 5.716 16.053 39.687 0.00 35.98 H0 HETATM 7219 H11 I2B B 601 4.313 15.257 40.979 1.00 25.04 H0 HETATM 7220 H12 I2B B 601 -1.212 14.091 43.423 1.00 18.77 H0 HETATM 7221 O HOH A 701 -3.959 9.313 7.375 1.00 10.25 O0 HETATM 7222 O HOH A 702 -14.403 25.796 6.587 1.00 18.71 O0 HETATM 7223 O HOH A 703 -8.984 14.071 7.017 1.00 22.08 O0 HETATM 7224 O HOH A 704 -14.030 13.950 8.868 1.00 3.12 O0 HETATM 7225 O HOH A 705 -13.968 13.943 6.039 1.00 13.69 O0 HETATM 7226 O HOH A 706 2.265 28.219 9.705 1.00 18.86 O0 HETATM 7227 O HOH A 707 -4.822 14.135 4.473 1.00 11.92 O0 HETATM 7228 O HOH A 708 -5.980 11.106 8.014 1.00 7.60 O0 HETATM 7229 O HOH A 709 -7.937 7.464 4.908 1.00 20.21 O0 HETATM 7230 O HOH A 710 -21.920 4.689 7.102 1.00 8.62 O0 HETATM 7231 O HOH B 701 -13.609 -6.334 41.660 1.00 25.06 O0 HETATM 7232 O HOH B 702 -10.108 3.075 48.942 1.00 12.60 O0 HETATM 7233 O HOH B 703 -4.752 -0.621 49.104 1.00 22.25 O0 HETATM 7234 O HOH B 704 -16.741 -2.761 26.006 1.00 37.05 O0 HETATM 7235 O HOH B 705 -7.469 7.079 45.907 1.00 21.70 O0 HETATM 7236 O HOH B 706 -16.668 4.735 43.281 1.00 11.45 O0 HETATM 7237 O HOH B 707 12.203 24.318 47.459 1.00 26.37 O0 HETATM 7238 O HOH B 708 -7.778 12.190 43.688 1.00 11.03 O0 HETATM 7239 O HOH B 709 -8.955 9.637 42.408 1.00 18.91 O0 HETATM 7240 O HOH B 710 -15.831 4.966 40.842 1.00 14.71 O0 HETATM 7241 O HOH B 711 -11.113 6.254 43.806 1.00 20.38 O0 HETATM 7242 O HOH B 712 -27.205 8.401 26.990 1.00 13.13 O0 HETATM 7243 O HOH B 713 -3.523 -14.125 37.759 1.00 10.08 O0 HETATM 7244 O HOH B 714 -8.590 7.018 43.528 1.00 16.30 O0 HETATM 7245 O HOH D 701 -5.668 -6.528 53.512 1.00 29.67 O0 CONECT 7159 7163 CONECT 7160 7161 7171 7177 CONECT 7161 7160 7162 7178 7179 CONECT 7162 7161 7163 7164 7180 CONECT 7163 7159 7162 CONECT 7164 7162 7166 7172 CONECT 7165 7172 7173 7181 CONECT 7166 7164 7175 7176 CONECT 7167 7169 7177 7182 CONECT 7168 7169 7183 CONECT 7169 7167 7168 7170 CONECT 7170 7169 7171 7184 CONECT 7171 7160 7170 7185 CONECT 7172 7164 7165 7186 CONECT 7173 7165 7174 7175 CONECT 7174 7173 7187 CONECT 7175 7166 7173 7188 CONECT 7176 7166 CONECT 7177 7160 7167 7189 CONECT 7178 7161 CONECT 7179 7161 CONECT 7180 7162 CONECT 7181 7165 CONECT 7182 7167 CONECT 7183 7168 CONECT 7184 7170 CONECT 7185 7171 CONECT 7186 7172 CONECT 7187 7174 CONECT 7188 7175 CONECT 7189 7177 CONECT 7190 7194 CONECT 7191 7192 7202 7208 CONECT 7192 7191 7193 7209 7210 CONECT 7193 7192 7194 7195 7211 CONECT 7194 7190 7193 CONECT 7195 7193 7197 7203 CONECT 7196 7203 7204 7212 CONECT 7197 7195 7206 7207 CONECT 7198 7200 7208 7213 CONECT 7199 7200 7214 CONECT 7200 7198 7199 7201 CONECT 7201 7200 7202 7215 CONECT 7202 7191 7201 7216 CONECT 7203 7195 7196 7217 CONECT 7204 7196 7205 7206 CONECT 7205 7204 7218 CONECT 7206 7197 7204 7219 CONECT 7207 7197 CONECT 7208 7191 7198 7220 CONECT 7209 7192 CONECT 7210 7192 CONECT 7211 7193 CONECT 7212 7196 CONECT 7213 7198 CONECT 7214 7199 CONECT 7215 7201 CONECT 7216 7202 CONECT 7217 7203 CONECT 7218 7205 CONECT 7219 7206 CONECT 7220 7208 MASTER 389 0 2 24 4 0 0 6 3593 4 62 40 END