HEADER VIRAL PROTEIN 27-MAY-22 7XWX TITLE CRYSTAL STRUCTURE OF SARS-COV-2 N-CTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL PROTEIN, DRUG TARGET, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.D.LUAN,X.M.LI,Y.F.LI REVDAT 2 29-NOV-23 7XWX 1 REMARK REVDAT 1 08-FEB-23 7XWX 0 JRNL AUTH X.LUAN,X.LI,Y.LI,G.SU,W.YIN,Y.JIANG,N.XU,F.WANG,W.CHENG, JRNL AUTH 2 Y.JIN,L.ZHANG,H.E.XU,Y.XUE,S.ZHANG JRNL TITL ANTIVIRAL DRUG DESIGN BASED ON STRUCTURAL INSIGHTS INTO THE JRNL TITL 2 N-TERMINAL DOMAIN AND C-TERMINAL DOMAIN OF THE SARS-COV-2 JRNL TITL 3 NUCLEOCAPSID PROTEIN. JRNL REF SCI BULL (BEIJING) V. 67 2327 2022 JRNL REFN ISSN 2095-9273 JRNL PMID 36317101 JRNL DOI 10.1016/J.SCIB.2022.10.021 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.95000 REMARK 3 B22 (A**2) : -2.69000 REMARK 3 B33 (A**2) : 7.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.464 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.878 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6291 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5561 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8523 ; 1.398 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12968 ; 2.332 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 6.190 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;32.916 ;23.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1003 ;15.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.903 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7102 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1370 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 28 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 269 365 B 269 365 2843 0.080 0.050 REMARK 3 2 A 269 365 C 269 365 2864 0.070 0.050 REMARK 3 3 A 269 363 D 269 363 2664 0.110 0.050 REMARK 3 4 A 273 363 E 273 363 2571 0.120 0.050 REMARK 3 5 A 269 363 F 269 363 2668 0.100 0.050 REMARK 3 6 A 269 365 G 269 365 2845 0.070 0.050 REMARK 3 7 A 273 361 H 273 361 2474 0.090 0.050 REMARK 3 8 B 268 366 C 268 366 2939 0.060 0.050 REMARK 3 9 B 269 363 D 269 363 2667 0.120 0.050 REMARK 3 10 B 273 363 E 273 363 2604 0.110 0.050 REMARK 3 11 B 269 363 F 269 363 2664 0.110 0.050 REMARK 3 12 B 268 366 G 268 366 2918 0.070 0.050 REMARK 3 13 B 273 361 H 273 361 2474 0.110 0.050 REMARK 3 14 C 269 363 D 269 363 2673 0.110 0.050 REMARK 3 15 C 273 363 E 273 363 2592 0.120 0.050 REMARK 3 16 C 269 363 F 269 363 2659 0.110 0.050 REMARK 3 17 C 268 366 G 268 366 2906 0.070 0.050 REMARK 3 18 C 273 361 H 273 361 2481 0.090 0.050 REMARK 3 19 D 273 363 E 273 363 2592 0.110 0.050 REMARK 3 20 D 269 364 F 269 364 2706 0.100 0.050 REMARK 3 21 D 269 363 G 269 363 2648 0.120 0.050 REMARK 3 22 D 273 361 H 273 361 2499 0.090 0.050 REMARK 3 23 E 273 363 F 273 363 2582 0.110 0.050 REMARK 3 24 E 273 363 G 273 363 2582 0.120 0.050 REMARK 3 25 E 273 361 H 273 361 2465 0.120 0.050 REMARK 3 26 F 269 363 G 269 363 2655 0.110 0.050 REMARK 3 27 F 273 361 H 273 361 2475 0.100 0.050 REMARK 3 28 G 273 361 H 273 361 2454 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7XWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300029054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20290 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.22400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANO3, NA2HPO4, (NH4)2SO4, TRIS(BASE), REMARK 280 BICINE, PEG MME500, PEG 20000, 1,8-ANS, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.17100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.17100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.72800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 143.33250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.72800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 143.33250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.17100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.72800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 143.33250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.17100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.72800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 143.33250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 401 LIES ON A SPECIAL POSITION. REMARK 375 P PO4 B 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 268 REMARK 465 GLU B 367 REMARK 465 GLU C 367 REMARK 465 GLY D 268 REMARK 465 PRO D 365 REMARK 465 THR D 366 REMARK 465 GLU D 367 REMARK 465 GLY E 268 REMARK 465 ASN E 269 REMARK 465 VAL E 270 REMARK 465 THR E 271 REMARK 465 GLN E 272 REMARK 465 PRO E 365 REMARK 465 THR E 366 REMARK 465 GLU E 367 REMARK 465 GLY F 268 REMARK 465 PRO F 365 REMARK 465 THR F 366 REMARK 465 GLU F 367 REMARK 465 GLU G 367 REMARK 465 GLY H 268 REMARK 465 ASN H 269 REMARK 465 VAL H 270 REMARK 465 THR H 271 REMARK 465 GLN H 272 REMARK 465 PHE H 363 REMARK 465 PRO H 364 REMARK 465 PRO H 365 REMARK 465 THR H 366 REMARK 465 GLU H 367 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA D 273 -27.48 -39.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 7XWX A 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX B 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX C 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX D 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX E 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX F 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX G 269 367 UNP P0DTC9 NCAP_SARS2 269 367 DBREF 7XWX H 269 367 UNP P0DTC9 NCAP_SARS2 269 367 SEQADV 7XWX GLY A 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY B 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY C 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY D 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY E 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY F 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY G 268 UNP P0DTC9 EXPRESSION TAG SEQADV 7XWX GLY H 268 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 A 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 A 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 A 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 A 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 A 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 A 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 A 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 B 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 B 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 B 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 B 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 B 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 B 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 B 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 B 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 C 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 C 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 C 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 C 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 C 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 C 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 C 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 C 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 D 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 D 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 D 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 D 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 D 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 D 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 D 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 D 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 E 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 E 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 E 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 E 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 E 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 E 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 E 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 E 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 F 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 F 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 F 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 F 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 F 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 F 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 F 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 F 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 G 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 G 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 G 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 G 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 G 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 G 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 G 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 G 100 ALA TYR LYS THR PHE PRO PRO THR GLU SEQRES 1 H 100 GLY ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU SEQRES 2 H 100 GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG SEQRES 3 H 100 GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN SEQRES 4 H 100 PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER ARG SEQRES 5 H 100 ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU THR SEQRES 6 H 100 TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN SEQRES 7 H 100 PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP SEQRES 8 H 100 ALA TYR LYS THR PHE PRO PRO THR GLU HET PO4 A 401 5 HET PO4 B 401 5 HET PO4 C 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 9 PO4 3(O4 P 3-) FORMUL 12 HOH *8(H2 O) HELIX 1 AA1 ASN A 269 GLY A 275 1 7 HELIX 2 AA2 ASP A 288 GLY A 295 1 8 HELIX 3 AA3 THR A 296 TYR A 298 5 3 HELIX 4 AA4 HIS A 300 GLN A 306 1 7 HELIX 5 AA5 SER A 310 SER A 318 1 9 HELIX 6 AA6 ASN A 345 ILE A 357 1 13 HELIX 7 AA7 ASP A 358 PHE A 363 5 6 HELIX 8 AA8 ASN B 269 GLY B 275 1 7 HELIX 9 AA9 ASP B 288 GLY B 295 1 8 HELIX 10 AB1 THR B 296 TYR B 298 5 3 HELIX 11 AB2 HIS B 300 GLN B 306 1 7 HELIX 12 AB3 SER B 310 SER B 318 1 9 HELIX 13 AB4 ASN B 345 ILE B 357 1 13 HELIX 14 AB5 ASP B 358 PHE B 363 5 6 HELIX 15 AB6 ASN C 269 GLY C 275 1 7 HELIX 16 AB7 ASP C 288 GLY C 295 1 8 HELIX 17 AB8 THR C 296 TYR C 298 5 3 HELIX 18 AB9 HIS C 300 GLN C 306 1 7 HELIX 19 AC1 SER C 310 SER C 318 1 9 HELIX 20 AC2 ASN C 345 ILE C 357 1 13 HELIX 21 AC3 ASP C 358 PHE C 363 5 6 HELIX 22 AC4 THR D 271 GLY D 275 5 5 HELIX 23 AC5 ASP D 288 GLY D 295 1 8 HELIX 24 AC6 THR D 296 TYR D 298 5 3 HELIX 25 AC7 HIS D 300 GLN D 306 1 7 HELIX 26 AC8 SER D 310 SER D 318 1 9 HELIX 27 AC9 ASN D 345 ILE D 357 1 13 HELIX 28 AD1 ASP D 358 PHE D 363 5 6 HELIX 29 AD2 ASP E 288 GLY E 295 1 8 HELIX 30 AD3 THR E 296 TYR E 298 5 3 HELIX 31 AD4 HIS E 300 GLN E 306 1 7 HELIX 32 AD5 SER E 310 SER E 318 1 9 HELIX 33 AD6 ASN E 345 ILE E 357 1 13 HELIX 34 AD7 ASP E 358 PHE E 363 5 6 HELIX 35 AD8 THR F 271 GLY F 275 5 5 HELIX 36 AD9 ASP F 288 GLY F 295 1 8 HELIX 37 AE1 THR F 296 TYR F 298 5 3 HELIX 38 AE2 HIS F 300 GLN F 306 1 7 HELIX 39 AE3 SER F 310 SER F 318 1 9 HELIX 40 AE4 ASN F 345 ILE F 357 1 13 HELIX 41 AE5 ASP F 358 PHE F 363 5 6 HELIX 42 AE6 ASN G 269 GLY G 275 1 7 HELIX 43 AE7 ASP G 288 GLY G 295 1 8 HELIX 44 AE8 THR G 296 TYR G 298 5 3 HELIX 45 AE9 HIS G 300 GLN G 306 1 7 HELIX 46 AF1 SER G 310 SER G 318 1 9 HELIX 47 AF2 ASN G 345 ILE G 357 1 13 HELIX 48 AF3 ASP G 358 PHE G 363 5 6 HELIX 49 AF4 ASP H 288 GLY H 295 1 8 HELIX 50 AF5 THR H 296 TYR H 298 5 3 HELIX 51 AF6 HIS H 300 GLN H 306 1 7 HELIX 52 AF7 SER H 310 SER H 318 1 9 HELIX 53 AF8 ASN H 345 ILE H 357 1 13 HELIX 54 AF9 ASP H 358 THR H 362 5 5 SHEET 1 AA1 4 ARG A 319 VAL A 324 0 SHEET 2 AA1 4 THR A 329 LYS A 338 -1 O THR A 334 N ARG A 319 SHEET 3 AA1 4 THR E 329 LYS E 338 -1 O LEU E 331 N ILE A 337 SHEET 4 AA1 4 ARG E 319 VAL E 324 -1 N ARG E 319 O THR E 334 SHEET 1 AA2 4 ARG B 319 VAL B 324 0 SHEET 2 AA2 4 THR B 329 LEU B 339 -1 O THR B 334 N ARG B 319 SHEET 3 AA2 4 THR F 329 LYS F 338 -1 O LEU F 331 N ILE B 337 SHEET 4 AA2 4 ARG F 319 VAL F 324 -1 N ARG F 319 O THR F 334 SHEET 1 AA3 4 ARG C 319 VAL C 324 0 SHEET 2 AA3 4 THR C 329 LEU C 339 -1 O THR C 334 N ARG C 319 SHEET 3 AA3 4 THR D 329 LYS D 338 -1 O LEU D 331 N ILE C 337 SHEET 4 AA3 4 ARG D 319 VAL D 324 -1 N ARG D 319 O THR D 334 SHEET 1 AA4 4 ARG G 319 VAL G 324 0 SHEET 2 AA4 4 THR G 329 LYS G 338 -1 O THR G 334 N ARG G 319 SHEET 3 AA4 4 THR H 329 LYS H 338 -1 O ILE H 337 N LEU G 331 SHEET 4 AA4 4 ARG H 319 VAL H 324 -1 N ARG H 319 O THR H 334 CRYST1 41.456 286.665 164.342 90.00 90.00 90.00 C 2 2 21 64 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006085 0.00000