HEADER MEMBRANE PROTEIN 02-JUN-22 7XZ0 TITLE TRIM E3 UBIQUITIN LIGASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 72; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MITSUGUMIN-53,MG53; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: TRIM72, MG53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRIM, TRIPARTITE MOTIF, UBIQUITIN LIGASE, COILED COIL, B-BOX, PRY- KEYWDS 2 SPRY, MEMBRANE PROTEIN, LIGASE, METAL BINDING PROTEIN, TRIM72, MG53 EXPDTA X-RAY DIFFRACTION AUTHOR S.H.PARK,H.K.SONG REVDAT 5 29-NOV-23 7XZ0 1 REMARK REVDAT 4 22-NOV-23 7XZ0 1 JRNL REVDAT 3 11-OCT-23 7XZ0 1 JRNL REVDAT 2 04-OCT-23 7XZ0 1 JRNL REMARK REVDAT 1 12-JUL-23 7XZ0 0 JRNL AUTH S.H.PARK,J.HAN,B.C.JEONG,J.H.SONG,S.H.JANG,H.JEONG,B.H.KIM, JRNL AUTH 2 Y.G.KO,Z.Y.PARK,K.E.LEE,J.HYUN,H.K.SONG JRNL TITL STRUCTURE AND ACTIVATION OF THE RING E3 UBIQUITIN LIGASE JRNL TITL 2 TRIM72 ON THE MEMBRANE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 30 1695 2023 JRNL REFN ESSN 1545-9985 JRNL PMID 37770719 JRNL DOI 10.1038/S41594-023-01111-7 REMARK 2 REMARK 2 RESOLUTION. 3.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 21652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.254 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7400 - 7.8900 0.94 1425 141 0.1710 0.2043 REMARK 3 2 7.8800 - 6.2700 0.99 1460 144 0.2525 0.3282 REMARK 3 3 6.2700 - 5.4800 0.99 1449 142 0.2652 0.3280 REMARK 3 4 5.4800 - 4.9800 0.99 1429 139 0.2149 0.3077 REMARK 3 5 4.9800 - 4.6200 0.96 1389 137 0.2293 0.2437 REMARK 3 6 4.6200 - 4.3500 0.96 1395 135 0.2522 0.2898 REMARK 3 7 4.3500 - 4.1300 0.94 1353 137 0.2870 0.3608 REMARK 3 8 4.1300 - 3.9500 0.95 1366 135 0.2862 0.3173 REMARK 3 9 3.9500 - 3.8000 0.96 1368 136 0.3277 0.4121 REMARK 3 10 3.8000 - 3.6700 0.99 1436 140 0.3444 0.4046 REMARK 3 11 3.6700 - 3.5500 0.99 1427 141 0.3311 0.4094 REMARK 3 12 3.5500 - 3.4500 0.98 1379 136 0.3137 0.3843 REMARK 3 13 3.4500 - 3.3600 0.99 1422 139 0.3543 0.3696 REMARK 3 14 3.3600 - 3.2800 0.97 1413 139 0.4511 0.4731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.559 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 100.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 139.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6242 REMARK 3 ANGLE : 0.650 8450 REMARK 3 CHIRALITY : 0.045 926 REMARK 3 PLANARITY : 0.004 1116 REMARK 3 DIHEDRAL : 4.852 844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -75.7632 10.5843 49.4397 REMARK 3 T TENSOR REMARK 3 T11: 0.6884 T22: 0.6233 REMARK 3 T33: 1.2452 T12: -0.1464 REMARK 3 T13: -0.2087 T23: 0.2092 REMARK 3 L TENSOR REMARK 3 L11: 1.5477 L22: 1.4586 REMARK 3 L33: 0.9160 L12: -0.8410 REMARK 3 L13: 0.0055 L23: 0.5320 REMARK 3 S TENSOR REMARK 3 S11: 0.5340 S12: -0.0049 S13: -0.8501 REMARK 3 S21: -0.3682 S22: 0.0174 S23: 1.0888 REMARK 3 S31: 0.4028 S32: -0.2589 S33: -0.6510 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.9407 -0.5353 58.8691 REMARK 3 T TENSOR REMARK 3 T11: 0.9350 T22: 0.6650 REMARK 3 T33: 1.2134 T12: 0.0699 REMARK 3 T13: -0.2803 T23: 0.2162 REMARK 3 L TENSOR REMARK 3 L11: 1.7203 L22: 3.3731 REMARK 3 L33: 6.8150 L12: -1.9787 REMARK 3 L13: 2.2744 L23: -4.7428 REMARK 3 S TENSOR REMARK 3 S11: -0.4169 S12: 0.5989 S13: 0.4292 REMARK 3 S21: 0.1960 S22: -1.4458 S23: -1.5994 REMARK 3 S31: 0.6901 S32: 1.7870 S33: 1.2800 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.5222 -4.0834 22.4761 REMARK 3 T TENSOR REMARK 3 T11: 1.0676 T22: 0.8492 REMARK 3 T33: 0.6069 T12: -0.0353 REMARK 3 T13: 0.2902 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 4.9046 L22: 5.4559 REMARK 3 L33: 8.4916 L12: -1.2824 REMARK 3 L13: -1.6324 L23: 2.6886 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 1.0969 S13: 0.2637 REMARK 3 S21: -1.7277 S22: -0.0189 S23: -0.8974 REMARK 3 S31: -0.0783 S32: 0.4861 S33: -0.0067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0866 -43.9490 95.5665 REMARK 3 T TENSOR REMARK 3 T11: 2.2955 T22: 2.4121 REMARK 3 T33: 2.8097 T12: 0.8115 REMARK 3 T13: -0.6932 T23: 0.6793 REMARK 3 L TENSOR REMARK 3 L11: 1.2405 L22: 0.6812 REMARK 3 L33: 1.7691 L12: -0.5482 REMARK 3 L13: -0.0665 L23: 0.8332 REMARK 3 S TENSOR REMARK 3 S11: 0.9891 S12: 1.0049 S13: -0.9811 REMARK 3 S21: -0.9411 S22: -0.3230 S23: 0.3693 REMARK 3 S31: 0.7272 S32: 0.0504 S33: -0.7893 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -70.6073 10.3707 55.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.8092 T22: 0.9174 REMARK 3 T33: 0.9220 T12: 0.2282 REMARK 3 T13: -0.0391 T23: 0.1441 REMARK 3 L TENSOR REMARK 3 L11: -0.0046 L22: 2.9054 REMARK 3 L33: 1.0419 L12: -0.5942 REMARK 3 L13: -0.0964 L23: -0.5586 REMARK 3 S TENSOR REMARK 3 S11: -0.7642 S12: -0.7518 S13: 0.1833 REMARK 3 S21: 0.6817 S22: 0.5040 S23: 0.3783 REMARK 3 S31: -0.5060 S32: -0.5456 S33: 0.2685 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.3004 30.4957 45.7585 REMARK 3 T TENSOR REMARK 3 T11: 1.1243 T22: 0.5603 REMARK 3 T33: 2.0448 T12: -0.1374 REMARK 3 T13: -0.5209 T23: 0.1926 REMARK 3 L TENSOR REMARK 3 L11: 0.4791 L22: 2.3450 REMARK 3 L33: 1.5337 L12: -0.1854 REMARK 3 L13: -0.1199 L23: 0.0811 REMARK 3 S TENSOR REMARK 3 S11: -0.3707 S12: 0.0709 S13: 1.8020 REMARK 3 S21: 0.0527 S22: -0.4129 S23: -0.9606 REMARK 3 S31: -0.4494 S32: 0.2382 S33: 0.5309 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 324 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7371 26.9481 48.3634 REMARK 3 T TENSOR REMARK 3 T11: 1.1317 T22: 0.9313 REMARK 3 T33: 2.2138 T12: -0.1934 REMARK 3 T13: -0.4522 T23: 0.2577 REMARK 3 L TENSOR REMARK 3 L11: 7.0577 L22: 7.1226 REMARK 3 L33: 4.7360 L12: 3.9675 REMARK 3 L13: 0.1278 L23: 2.8398 REMARK 3 S TENSOR REMARK 3 S11: 0.0850 S12: 0.2953 S13: 0.4763 REMARK 3 S21: 0.1232 S22: -0.0543 S23: -2.6637 REMARK 3 S31: -0.4002 S32: 0.9038 S33: -0.1002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XZ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300029964. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22376 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7XV2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 8% (V/V) PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 119.86400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.48350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 119.86400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.48350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 77 REMARK 465 SER A 78 REMARK 465 ALA A 79 REMARK 465 GLN A 80 REMARK 465 VAL A 81 REMARK 465 PRO A 82 REMARK 465 GLN A 83 REMARK 465 GLY A 84 REMARK 465 GLY B 77 REMARK 465 SER B 78 REMARK 465 ALA B 79 REMARK 465 GLN B 80 REMARK 465 VAL B 81 REMARK 465 PRO B 82 REMARK 465 GLN B 83 REMARK 465 GLY B 84 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 100 CE1 HIS B 114 2.19 REMARK 500 NH2 ARG A 180 OE1 GLU B 187 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 230 28.41 -142.54 REMARK 500 ASP A 315 38.18 -97.34 REMARK 500 ARG A 326 35.41 -96.68 REMARK 500 ARG A 368 39.55 -98.24 REMARK 500 GLU B 88 -30.07 -130.22 REMARK 500 ALA B 230 38.94 -79.70 REMARK 500 SER B 253 47.67 -91.05 REMARK 500 PRO B 258 -176.29 -68.45 REMARK 500 LEU B 265 78.43 54.50 REMARK 500 ASP B 270 -40.95 -135.90 REMARK 500 ASP B 315 47.45 -94.48 REMARK 500 ARG B 326 36.27 -97.89 REMARK 500 ARG B 368 51.55 -97.26 REMARK 500 PRO B 406 -179.88 -69.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 HIS A 89 ND1 108.1 REMARK 620 3 CYS A 105 SG 103.7 116.3 REMARK 620 4 CYS A 108 SG 121.2 102.1 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 HIS A 114 ND1 124.1 REMARK 620 3 HIS A 117 ND1 89.3 125.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 86 SG REMARK 620 2 HIS B 89 ND1 112.2 REMARK 620 3 CYS B 105 SG 96.3 122.6 REMARK 620 4 CYS B 108 SG 118.8 102.3 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 97 SG REMARK 620 2 ASP B 100 OD2 132.3 REMARK 620 3 HIS B 114 ND1 96.9 74.2 REMARK 620 4 HIS B 117 ND1 87.7 138.9 94.3 REMARK 620 N 1 2 3 DBREF 7XZ0 A 79 470 UNP Q1XH17 TRI72_MOUSE 79 470 DBREF 7XZ0 B 79 470 UNP Q1XH17 TRI72_MOUSE 79 470 SEQADV 7XZ0 GLY A 77 UNP Q1XH17 EXPRESSION TAG SEQADV 7XZ0 SER A 78 UNP Q1XH17 EXPRESSION TAG SEQADV 7XZ0 SER A 144 UNP Q1XH17 CYS 144 ENGINEERED MUTATION SEQADV 7XZ0 SER A 242 UNP Q1XH17 CYS 242 ENGINEERED MUTATION SEQADV 7XZ0 HIS A 279 UNP Q1XH17 LYS 279 ENGINEERED MUTATION SEQADV 7XZ0 HIS A 283 UNP Q1XH17 ALA 283 ENGINEERED MUTATION SEQADV 7XZ0 GLY B 77 UNP Q1XH17 EXPRESSION TAG SEQADV 7XZ0 SER B 78 UNP Q1XH17 EXPRESSION TAG SEQADV 7XZ0 SER B 144 UNP Q1XH17 CYS 144 ENGINEERED MUTATION SEQADV 7XZ0 SER B 242 UNP Q1XH17 CYS 242 ENGINEERED MUTATION SEQADV 7XZ0 HIS B 279 UNP Q1XH17 LYS 279 ENGINEERED MUTATION SEQADV 7XZ0 HIS B 283 UNP Q1XH17 ALA 283 ENGINEERED MUTATION SEQRES 1 A 394 GLY SER ALA GLN VAL PRO GLN GLY HIS CYS GLU GLU HIS SEQRES 2 A 394 LEU ASP PRO LEU SER ILE TYR CYS GLU GLN ASP ARG THR SEQRES 3 A 394 LEU VAL CYS GLY VAL CYS ALA SER LEU GLY SER HIS ARG SEQRES 4 A 394 GLY HIS ARG LEU LEU PRO ALA ALA GLU ALA GLN ALA ARG SEQRES 5 A 394 LEU LYS THR GLN LEU PRO GLN GLN LYS MET GLN LEU GLN SEQRES 6 A 394 GLU ALA SER MET ARG LYS GLU LYS THR VAL ALA VAL LEU SEQRES 7 A 394 GLU HIS GLN LEU VAL GLU VAL GLU GLU THR VAL ARG GLN SEQRES 8 A 394 PHE ARG GLY ALA VAL GLY GLU GLN LEU GLY LYS MET ARG SEQRES 9 A 394 MET PHE LEU ALA ALA LEU GLU SER SER LEU ASP ARG GLU SEQRES 10 A 394 ALA GLU ARG VAL ARG GLY ASP ALA GLY VAL ALA LEU ARG SEQRES 11 A 394 ARG GLU LEU SER SER LEU ASN SER TYR LEU GLU GLN LEU SEQRES 12 A 394 ARG GLN MET GLU LYS VAL LEU GLU GLU VAL ALA ASP LYS SEQRES 13 A 394 PRO GLN THR GLU PHE LEU MET LYS PHE SER LEU VAL THR SEQRES 14 A 394 SER ARG LEU GLN LYS ILE LEU SER GLU SER PRO PRO PRO SEQRES 15 A 394 ALA ARG LEU ASP ILE GLN LEU PRO VAL ILE SER ASP ASP SEQRES 16 A 394 PHE LYS PHE GLN VAL TRP LYS HIS MET PHE ARG HIS LEU SEQRES 17 A 394 MET PRO ALA LEU GLU GLU LEU THR PHE ASP PRO SER SER SEQRES 18 A 394 ALA HIS PRO SER LEU VAL VAL SER SER SER GLY ARG ARG SEQRES 19 A 394 VAL GLU CYS SER ASP GLN LYS ALA PRO PRO ALA GLY GLU SEQRES 20 A 394 ASP THR ARG GLN PHE ASP LYS ALA VAL ALA VAL VAL ALA SEQRES 21 A 394 GLN GLN LEU LEU SER GLN GLY GLU HIS TYR TRP GLU VAL SEQRES 22 A 394 GLU VAL GLY ASP LYS PRO ARG TRP ALA LEU GLY VAL MET SEQRES 23 A 394 ALA ALA ASP ALA SER ARG ARG GLY ARG LEU HIS ALA VAL SEQRES 24 A 394 PRO SER GLN GLY LEU TRP LEU LEU GLY LEU ARG ASP GLY SEQRES 25 A 394 LYS ILE LEU GLU ALA HIS VAL GLU ALA LYS GLU PRO ARG SEQRES 26 A 394 ALA LEU ARG THR PRO GLU ARG PRO PRO ALA ARG ILE GLY SEQRES 27 A 394 LEU TYR LEU SER PHE ALA ASP GLY VAL LEU ALA PHE TYR SEQRES 28 A 394 ASP ALA SER ASN PRO ASP VAL LEU THR PRO ILE PHE SER SEQRES 29 A 394 PHE HIS GLU ARG LEU PRO GLY PRO VAL TYR PRO ILE PHE SEQRES 30 A 394 ASP VAL CYS TRP HIS ASP LYS GLY LYS ASN ALA GLN PRO SEQRES 31 A 394 LEU LEU LEU VAL SEQRES 1 B 394 GLY SER ALA GLN VAL PRO GLN GLY HIS CYS GLU GLU HIS SEQRES 2 B 394 LEU ASP PRO LEU SER ILE TYR CYS GLU GLN ASP ARG THR SEQRES 3 B 394 LEU VAL CYS GLY VAL CYS ALA SER LEU GLY SER HIS ARG SEQRES 4 B 394 GLY HIS ARG LEU LEU PRO ALA ALA GLU ALA GLN ALA ARG SEQRES 5 B 394 LEU LYS THR GLN LEU PRO GLN GLN LYS MET GLN LEU GLN SEQRES 6 B 394 GLU ALA SER MET ARG LYS GLU LYS THR VAL ALA VAL LEU SEQRES 7 B 394 GLU HIS GLN LEU VAL GLU VAL GLU GLU THR VAL ARG GLN SEQRES 8 B 394 PHE ARG GLY ALA VAL GLY GLU GLN LEU GLY LYS MET ARG SEQRES 9 B 394 MET PHE LEU ALA ALA LEU GLU SER SER LEU ASP ARG GLU SEQRES 10 B 394 ALA GLU ARG VAL ARG GLY ASP ALA GLY VAL ALA LEU ARG SEQRES 11 B 394 ARG GLU LEU SER SER LEU ASN SER TYR LEU GLU GLN LEU SEQRES 12 B 394 ARG GLN MET GLU LYS VAL LEU GLU GLU VAL ALA ASP LYS SEQRES 13 B 394 PRO GLN THR GLU PHE LEU MET LYS PHE SER LEU VAL THR SEQRES 14 B 394 SER ARG LEU GLN LYS ILE LEU SER GLU SER PRO PRO PRO SEQRES 15 B 394 ALA ARG LEU ASP ILE GLN LEU PRO VAL ILE SER ASP ASP SEQRES 16 B 394 PHE LYS PHE GLN VAL TRP LYS HIS MET PHE ARG HIS LEU SEQRES 17 B 394 MET PRO ALA LEU GLU GLU LEU THR PHE ASP PRO SER SER SEQRES 18 B 394 ALA HIS PRO SER LEU VAL VAL SER SER SER GLY ARG ARG SEQRES 19 B 394 VAL GLU CYS SER ASP GLN LYS ALA PRO PRO ALA GLY GLU SEQRES 20 B 394 ASP THR ARG GLN PHE ASP LYS ALA VAL ALA VAL VAL ALA SEQRES 21 B 394 GLN GLN LEU LEU SER GLN GLY GLU HIS TYR TRP GLU VAL SEQRES 22 B 394 GLU VAL GLY ASP LYS PRO ARG TRP ALA LEU GLY VAL MET SEQRES 23 B 394 ALA ALA ASP ALA SER ARG ARG GLY ARG LEU HIS ALA VAL SEQRES 24 B 394 PRO SER GLN GLY LEU TRP LEU LEU GLY LEU ARG ASP GLY SEQRES 25 B 394 LYS ILE LEU GLU ALA HIS VAL GLU ALA LYS GLU PRO ARG SEQRES 26 B 394 ALA LEU ARG THR PRO GLU ARG PRO PRO ALA ARG ILE GLY SEQRES 27 B 394 LEU TYR LEU SER PHE ALA ASP GLY VAL LEU ALA PHE TYR SEQRES 28 B 394 ASP ALA SER ASN PRO ASP VAL LEU THR PRO ILE PHE SER SEQRES 29 B 394 PHE HIS GLU ARG LEU PRO GLY PRO VAL TYR PRO ILE PHE SEQRES 30 B 394 ASP VAL CYS TRP HIS ASP LYS GLY LYS ASN ALA GLN PRO SEQRES 31 B 394 LEU LEU LEU VAL HET ZN A 501 1 HET ZN A 502 1 HET ZN B 501 1 HET ZN B 502 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) HELIX 1 AA1 CYS A 105 LEU A 111 1 7 HELIX 2 AA2 ALA A 122 VAL A 229 1 108 HELIX 3 AA3 PRO A 233 GLU A 254 1 22 HELIX 4 AA4 ASP A 270 MET A 285 1 16 HELIX 5 AA5 VAL A 375 GLN A 378 5 4 HELIX 6 AA6 GLY B 106 LEU B 111 1 6 HELIX 7 AA7 ALA B 122 ALA B 230 1 109 HELIX 8 AA8 PRO B 233 SER B 253 1 21 HELIX 9 AA9 ASP B 271 MET B 285 1 15 HELIX 10 AB1 VAL B 375 GLN B 378 5 4 HELIX 11 AB2 HIS B 458 LYS B 462 5 5 SHEET 1 AA1 3 THR A 102 VAL A 104 0 SHEET 2 AA1 3 ILE A 95 CYS A 97 -1 N ILE A 95 O VAL A 104 SHEET 3 AA1 3 LEU A 119 PRO A 121 -1 O LEU A 120 N TYR A 96 SHEET 1 AA2 7 LEU A 302 SER A 305 0 SHEET 2 AA2 7 ARG A 310 CYS A 313 -1 O ARG A 310 N SER A 305 SHEET 3 AA2 7 LEU A 467 LEU A 469 -1 O LEU A 467 N VAL A 311 SHEET 4 AA2 7 GLU A 344 GLU A 350 -1 N GLU A 350 O LEU A 468 SHEET 5 AA2 7 ARG A 412 SER A 418 -1 O ILE A 413 N VAL A 349 SHEET 6 AA2 7 VAL A 423 ASP A 428 -1 O ALA A 425 N TYR A 416 SHEET 7 AA2 7 THR A 436 HIS A 442 -1 O PHE A 439 N PHE A 426 SHEET 1 AA3 6 VAL A 334 VAL A 335 0 SHEET 2 AA3 6 VAL A 449 VAL A 455 -1 O PHE A 453 N VAL A 334 SHEET 3 AA3 6 TRP A 357 ALA A 363 -1 N MET A 362 O TYR A 450 SHEET 4 AA3 6 LEU A 380 ARG A 386 -1 O TRP A 381 N VAL A 361 SHEET 5 AA3 6 ILE A 390 HIS A 394 -1 O ILE A 390 N ARG A 386 SHEET 6 AA3 6 ARG A 401 ALA A 402 -1 O ARG A 401 N ALA A 393 SHEET 1 AA4 3 THR B 102 VAL B 104 0 SHEET 2 AA4 3 ILE B 95 CYS B 97 -1 N ILE B 95 O VAL B 104 SHEET 3 AA4 3 LEU B 119 PRO B 121 -1 O LEU B 120 N TYR B 96 SHEET 1 AA5 7 LEU B 302 SER B 305 0 SHEET 2 AA5 7 ARG B 310 CYS B 313 -1 O ARG B 310 N SER B 305 SHEET 3 AA5 7 LEU B 467 LEU B 469 -1 O LEU B 467 N VAL B 311 SHEET 4 AA5 7 GLU B 344 GLU B 350 -1 N GLU B 350 O LEU B 468 SHEET 5 AA5 7 ARG B 412 SER B 418 -1 O LEU B 417 N HIS B 345 SHEET 6 AA5 7 VAL B 423 ASP B 428 -1 O ALA B 425 N TYR B 416 SHEET 7 AA5 7 THR B 436 HIS B 442 -1 O PHE B 439 N PHE B 426 SHEET 1 AA6 6 VAL B 334 VAL B 335 0 SHEET 2 AA6 6 VAL B 449 VAL B 455 -1 O PHE B 453 N VAL B 334 SHEET 3 AA6 6 TRP B 357 ALA B 363 -1 N MET B 362 O TYR B 450 SHEET 4 AA6 6 LEU B 380 ARG B 386 -1 O LEU B 383 N LEU B 359 SHEET 5 AA6 6 ILE B 390 ALA B 393 -1 O GLU B 392 N GLY B 384 SHEET 6 AA6 6 ARG B 401 ALA B 402 -1 O ARG B 401 N ALA B 393 LINK SG CYS A 86 ZN ZN A 501 1555 1555 2.60 LINK ND1 HIS A 89 ZN ZN A 501 1555 1555 2.06 LINK SG CYS A 97 ZN ZN A 502 1555 1555 2.38 LINK SG CYS A 105 ZN ZN A 501 1555 1555 2.27 LINK SG CYS A 108 ZN ZN A 501 1555 1555 2.39 LINK ND1 HIS A 114 ZN ZN A 502 1555 1555 1.91 LINK ND1 HIS A 117 ZN ZN A 502 1555 1555 2.03 LINK SG CYS B 86 ZN ZN B 501 1555 1555 2.51 LINK ND1 HIS B 89 ZN ZN B 501 1555 1555 2.16 LINK SG CYS B 97 ZN ZN B 502 1555 1555 2.39 LINK OD2 ASP B 100 ZN ZN B 502 1555 1555 2.65 LINK SG CYS B 105 ZN ZN B 501 1555 1555 2.24 LINK SG CYS B 108 ZN ZN B 501 1555 1555 2.34 LINK ND1 HIS B 114 ZN ZN B 502 1555 1555 2.14 LINK ND1 HIS B 117 ZN ZN B 502 1555 1555 2.09 CISPEP 1 GLY A 447 PRO A 448 0 -6.40 CISPEP 2 GLY B 447 PRO B 448 0 -5.64 CRYST1 239.728 72.967 83.764 90.00 97.60 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004171 0.000000 0.000557 0.00000 SCALE2 0.000000 0.013705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012044 0.00000 MTRIX1 1 0.126394 0.353673 -0.926790 -7.79248 1 MTRIX2 1 0.360636 -0.886737 -0.289205 50.31498 1 MTRIX3 1 -0.924103 -0.297680 -0.239625 9.19674 1