HEADER LIGASE 03-JUN-22 7XZP TITLE FORMATE-TETRAHYDROFOLATE LIGASE IN COMPLEX WITH BERBERINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE--TETRAHYDROFOLATE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FORMYLTETRAHYDROFOLATE SYNTHETASE,FHS,FTHFS; COMPND 5 EC: 6.3.4.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEPTOSTREPTOCOCCUS ANAEROBIUS; SOURCE 3 ORGANISM_TAXID: 1261; SOURCE 4 GENE: FHS, NCTC11460_01517; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FORMATE TETRAHYDROFOLATE LIGASE, BERBERINE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.FANG,Y.ZHANG REVDAT 3 20-DEC-23 7XZP 1 JRNL REVDAT 2 29-NOV-23 7XZP 1 REMARK REVDAT 1 07-JUN-23 7XZP 0 JRNL AUTH J.YAN,C.FANG,G.YANG,J.LI,Y.LIU,L.ZHANG,P.YANG,J.FANG,Y.GU, JRNL AUTH 2 Y.ZHANG,W.JIANG JRNL TITL IDENTIFICATION OF FTFL AS A NOVEL TARGET OF BERBERINE IN JRNL TITL 2 INTESTINAL BACTERIA. JRNL REF BMC BIOL. V. 21 280 2023 JRNL REFN ESSN 1741-7007 JRNL PMID 38049785 JRNL DOI 10.1186/S12915-023-01778-W REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6500 - 6.1658 0.99 3501 151 0.1594 0.1679 REMARK 3 2 6.1658 - 4.8956 1.00 3405 145 0.1706 0.2006 REMARK 3 3 4.8956 - 4.2772 1.00 3379 144 0.1405 0.1754 REMARK 3 4 4.2772 - 3.8863 1.00 3344 143 0.1611 0.1925 REMARK 3 5 3.8863 - 3.6079 1.00 3354 143 0.1876 0.2426 REMARK 3 6 3.6079 - 3.3952 1.00 3344 143 0.2192 0.2347 REMARK 3 7 3.3952 - 3.2252 1.00 3327 142 0.2348 0.2986 REMARK 3 8 3.2252 - 3.0849 1.00 3293 141 0.2558 0.2989 REMARK 3 9 3.0849 - 2.9661 1.00 3343 143 0.2862 0.3327 REMARK 3 10 2.9661 - 2.8638 1.00 3310 141 0.2797 0.3224 REMARK 3 11 2.8638 - 2.7742 1.00 3303 141 0.2874 0.3712 REMARK 3 12 2.7742 - 2.6950 1.00 3309 141 0.3010 0.3509 REMARK 3 13 2.6950 - 2.6240 1.00 3291 140 0.3038 0.3266 REMARK 3 14 2.6240 - 2.5600 1.00 3305 142 0.3244 0.3547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7XZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300029934. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 5A4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 2.0M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.80500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.80500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 102.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 102.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.80500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 68.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 102.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.80500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 68.13000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 102.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 442 CG CD OE1 OE2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 ARG A 513 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 531 CG1 CG2 CD1 REMARK 470 MET B 0 CG SD CE REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 PHE B 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 TYR B 44 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 352 CG CD OE1 OE2 REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 470 GLU B 530 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 4 -169.91 -112.08 REMARK 500 LYS A 106 160.04 67.49 REMARK 500 LEU A 125 -117.55 -108.94 REMARK 500 PHE A 127 -118.06 48.45 REMARK 500 GLN A 151 -71.57 -73.35 REMARK 500 ALA A 226 -170.38 -171.29 REMARK 500 LEU A 306 -70.08 -116.51 REMARK 500 SER A 518 78.53 -113.84 REMARK 500 LYS B 106 158.44 72.06 REMARK 500 LEU B 125 -115.34 -106.88 REMARK 500 PHE B 127 -120.27 48.67 REMARK 500 THR B 152 -33.54 -136.11 REMARK 500 ASP B 169 57.39 -91.94 REMARK 500 VAL B 258 -156.47 -133.86 REMARK 500 LEU B 306 -65.76 -122.76 REMARK 500 ASN B 350 82.90 -154.85 REMARK 500 SER B 518 72.37 -109.83 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7XZP A 1 558 UNP A0A379CIH2_9FIRM DBREF2 7XZP A A0A379CIH2 1 558 DBREF1 7XZP B 1 558 UNP A0A379CIH2_9FIRM DBREF2 7XZP B A0A379CIH2 1 558 SEQADV 7XZP GLY A -3 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP SER A -2 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP HIS A -1 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP MET A 0 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP GLY B -3 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP SER B -2 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP HIS B -1 UNP A0A379CIH EXPRESSION TAG SEQADV 7XZP MET B 0 UNP A0A379CIH EXPRESSION TAG SEQRES 1 A 562 GLY SER HIS MET MET GLU PHE LYS THR ASP ILE GLU ILE SEQRES 2 A 562 ALA GLN GLU ALA ASN PRO GLN ASP ILE ARG ASP ILE ALA SEQRES 3 A 562 LYS LYS ILE ASN LEU SER GLU ASP ASP ILE GLU LEU TYR SEQRES 4 A 562 GLY LYS TYR LYS ALA LYS ILE ASP TYR ASN VAL LEU ASN SEQRES 5 A 562 ARG THR LYS SER ARG ALA GLY LYS LEU ILE LEU THR THR SEQRES 6 A 562 ALA ILE ASN PRO THR PRO ALA GLY GLU GLY LYS THR THR SEQRES 7 A 562 THR SER ILE GLY VAL ALA ASP ALA LEU ALA LYS LEU GLY SEQRES 8 A 562 LYS ASN VAL ILE ALA ALA LEU ARG GLU PRO SER MET GLY SEQRES 9 A 562 PRO VAL PHE GLY ILE LYS GLY GLY ALA ALA GLY GLY GLY SEQRES 10 A 562 TYR ALA GLN VAL VAL PRO MET GLU ASP ILE ASN LEU HIS SEQRES 11 A 562 PHE THR GLY ASP MET HIS ALA ILE GLY ALA ALA ASN ASN SEQRES 12 A 562 LEU LEU ALA ALA MET LEU ASP ASN HIS VAL TYR GLN THR SEQRES 13 A 562 ASN SER LEU ASN ILE ASN PRO LYS ARG ILE THR TRP ARG SEQRES 14 A 562 ARG CYS VAL ASP MET ASN ASP ARG GLN LEU ARG ASN VAL SEQRES 15 A 562 VAL ASP GLY LEU GLY LYS LYS VAL ASP GLY VAL THR ARG SEQRES 16 A 562 GLU ASP GLY PHE ASP ILE THR VAL ALA SER GLU VAL MET SEQRES 17 A 562 ALA ALA PHE CYS LEU SER ASN ASN ILE SER GLU LEU LYS SEQRES 18 A 562 GLU ASN LEU GLY ASN ILE VAL VAL ALA TYR ASN TYR SER SEQRES 19 A 562 GLY LYS PRO VAL THR ALA ARG ASP LEU ASN ALA HIS GLY SEQRES 20 A 562 ALA MET ALA ALA ILE LEU LYS ASP ALA LEU LYS PRO ASN SEQRES 21 A 562 LEU VAL GLN THR LEU GLU GLY THR PRO ALA ILE LEU HIS SEQRES 22 A 562 GLY GLY PRO PHE ALA ASN ILE ALA HIS GLY CYS ASN SER SEQRES 23 A 562 ILE ILE ALA THR LYS MET GLY MET HIS MET ALA ASP TYR SEQRES 24 A 562 VAL VAL THR GLU ALA GLY PHE GLY ALA ASP LEU GLY ALA SEQRES 25 A 562 GLU LYS PHE LEU ASP ILE LYS CYS ARG LYS ALA GLY ILE SEQRES 26 A 562 ARG PRO ASP ALA VAL ILE ILE VAL ALA THR VAL ARG ALA SEQRES 27 A 562 LEU LYS TYR ASN GLY GLY VAL ALA LYS ASP GLN LEU ASN SEQRES 28 A 562 ASN GLU ASN LEU GLU ALA LEU GLU LYS GLY LEU PRO ASN SEQRES 29 A 562 LEU LEU LYS HIS ILE GLU ASN ILE THR GLN VAL TYR LYS SEQRES 30 A 562 ILE PRO ALA VAL VAL ALA ILE ASN ARG PHE PRO LEU ASP SEQRES 31 A 562 THR ASP ALA GLU LEU ALA LEU VAL ARG SER LYS CYS GLU SEQRES 32 A 562 GLU LEU GLY VAL LYS VAL ALA LEU SER GLU VAL TRP ALA SEQRES 33 A 562 ASN GLY GLY GLU GLY GLY ILE GLU VAL ALA ASN GLU VAL SEQRES 34 A 562 LEU LYS LEU ILE GLU GLU GLY GLU ASN ASN PHE GLU TYR SEQRES 35 A 562 CYS TYR GLU GLU ASP MET THR ILE LYS GLU LYS LEU ASN SEQRES 36 A 562 ALA ILE ALA THR LYS ILE TYR GLY ALA ASP GLY VAL ASN SEQRES 37 A 562 TYR THR LYS GLU ALA ASN LYS GLN ILE ALA GLU LEU GLU SEQRES 38 A 562 GLU LEU GLY PHE GLY ASN LEU PRO VAL CYS VAL ALA LYS SEQRES 39 A 562 THR GLN TYR SER LEU SER ASP ASP GLN THR LYS LEU GLY SEQRES 40 A 562 ARG PRO THR GLY PHE THR ILE GLU VAL ARG GLN ALA ASN SEQRES 41 A 562 ILE SER ALA GLY ALA GLY PHE VAL VAL VAL MET THR GLY SEQRES 42 A 562 GLU ILE MET LYS MET PRO GLY LEU PRO LYS LEU PRO ALA SEQRES 43 A 562 ALA GLU ARG ILE ASP VAL ASP GLU ASN GLY LYS ILE SER SEQRES 44 A 562 GLY LEU PHE SEQRES 1 B 562 GLY SER HIS MET MET GLU PHE LYS THR ASP ILE GLU ILE SEQRES 2 B 562 ALA GLN GLU ALA ASN PRO GLN ASP ILE ARG ASP ILE ALA SEQRES 3 B 562 LYS LYS ILE ASN LEU SER GLU ASP ASP ILE GLU LEU TYR SEQRES 4 B 562 GLY LYS TYR LYS ALA LYS ILE ASP TYR ASN VAL LEU ASN SEQRES 5 B 562 ARG THR LYS SER ARG ALA GLY LYS LEU ILE LEU THR THR SEQRES 6 B 562 ALA ILE ASN PRO THR PRO ALA GLY GLU GLY LYS THR THR SEQRES 7 B 562 THR SER ILE GLY VAL ALA ASP ALA LEU ALA LYS LEU GLY SEQRES 8 B 562 LYS ASN VAL ILE ALA ALA LEU ARG GLU PRO SER MET GLY SEQRES 9 B 562 PRO VAL PHE GLY ILE LYS GLY GLY ALA ALA GLY GLY GLY SEQRES 10 B 562 TYR ALA GLN VAL VAL PRO MET GLU ASP ILE ASN LEU HIS SEQRES 11 B 562 PHE THR GLY ASP MET HIS ALA ILE GLY ALA ALA ASN ASN SEQRES 12 B 562 LEU LEU ALA ALA MET LEU ASP ASN HIS VAL TYR GLN THR SEQRES 13 B 562 ASN SER LEU ASN ILE ASN PRO LYS ARG ILE THR TRP ARG SEQRES 14 B 562 ARG CYS VAL ASP MET ASN ASP ARG GLN LEU ARG ASN VAL SEQRES 15 B 562 VAL ASP GLY LEU GLY LYS LYS VAL ASP GLY VAL THR ARG SEQRES 16 B 562 GLU ASP GLY PHE ASP ILE THR VAL ALA SER GLU VAL MET SEQRES 17 B 562 ALA ALA PHE CYS LEU SER ASN ASN ILE SER GLU LEU LYS SEQRES 18 B 562 GLU ASN LEU GLY ASN ILE VAL VAL ALA TYR ASN TYR SER SEQRES 19 B 562 GLY LYS PRO VAL THR ALA ARG ASP LEU ASN ALA HIS GLY SEQRES 20 B 562 ALA MET ALA ALA ILE LEU LYS ASP ALA LEU LYS PRO ASN SEQRES 21 B 562 LEU VAL GLN THR LEU GLU GLY THR PRO ALA ILE LEU HIS SEQRES 22 B 562 GLY GLY PRO PHE ALA ASN ILE ALA HIS GLY CYS ASN SER SEQRES 23 B 562 ILE ILE ALA THR LYS MET GLY MET HIS MET ALA ASP TYR SEQRES 24 B 562 VAL VAL THR GLU ALA GLY PHE GLY ALA ASP LEU GLY ALA SEQRES 25 B 562 GLU LYS PHE LEU ASP ILE LYS CYS ARG LYS ALA GLY ILE SEQRES 26 B 562 ARG PRO ASP ALA VAL ILE ILE VAL ALA THR VAL ARG ALA SEQRES 27 B 562 LEU LYS TYR ASN GLY GLY VAL ALA LYS ASP GLN LEU ASN SEQRES 28 B 562 ASN GLU ASN LEU GLU ALA LEU GLU LYS GLY LEU PRO ASN SEQRES 29 B 562 LEU LEU LYS HIS ILE GLU ASN ILE THR GLN VAL TYR LYS SEQRES 30 B 562 ILE PRO ALA VAL VAL ALA ILE ASN ARG PHE PRO LEU ASP SEQRES 31 B 562 THR ASP ALA GLU LEU ALA LEU VAL ARG SER LYS CYS GLU SEQRES 32 B 562 GLU LEU GLY VAL LYS VAL ALA LEU SER GLU VAL TRP ALA SEQRES 33 B 562 ASN GLY GLY GLU GLY GLY ILE GLU VAL ALA ASN GLU VAL SEQRES 34 B 562 LEU LYS LEU ILE GLU GLU GLY GLU ASN ASN PHE GLU TYR SEQRES 35 B 562 CYS TYR GLU GLU ASP MET THR ILE LYS GLU LYS LEU ASN SEQRES 36 B 562 ALA ILE ALA THR LYS ILE TYR GLY ALA ASP GLY VAL ASN SEQRES 37 B 562 TYR THR LYS GLU ALA ASN LYS GLN ILE ALA GLU LEU GLU SEQRES 38 B 562 GLU LEU GLY PHE GLY ASN LEU PRO VAL CYS VAL ALA LYS SEQRES 39 B 562 THR GLN TYR SER LEU SER ASP ASP GLN THR LYS LEU GLY SEQRES 40 B 562 ARG PRO THR GLY PHE THR ILE GLU VAL ARG GLN ALA ASN SEQRES 41 B 562 ILE SER ALA GLY ALA GLY PHE VAL VAL VAL MET THR GLY SEQRES 42 B 562 GLU ILE MET LYS MET PRO GLY LEU PRO LYS LEU PRO ALA SEQRES 43 B 562 ALA GLU ARG ILE ASP VAL ASP GLU ASN GLY LYS ILE SER SEQRES 44 B 562 GLY LEU PHE HET BER A 601 25 HET BER A 602 25 HET SO4 A 603 5 HET PRO A 604 8 HET PRO A 605 8 HET PRO A 606 8 HET PRO A 607 8 HET PRO A 608 8 HET BER B 601 25 HET BER B 602 25 HET SO4 B 603 5 HET PRO B 604 8 HET PRO B 605 8 HET PRO B 606 8 HET PRO B 607 8 HETNAM BER BERBERINE HETNAM SO4 SULFATE ION HETNAM PRO PROLINE FORMUL 3 BER 4(C20 H18 N O4 1+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 PRO 9(C5 H9 N O2) FORMUL 18 HOH *53(H2 O) HELIX 1 AA1 THR A 5 GLU A 12 1 8 HELIX 2 AA2 ASP A 17 LYS A 24 1 8 HELIX 3 AA3 SER A 28 ASP A 30 5 3 HELIX 4 AA4 TYR A 44 THR A 50 5 7 HELIX 5 AA5 GLY A 71 LEU A 86 1 16 HELIX 6 AA6 PRO A 101 LYS A 106 1 6 HELIX 7 AA7 PRO A 119 LEU A 125 1 7 HELIX 8 AA8 GLY A 129 THR A 152 1 24 HELIX 9 AA9 ASN A 158 ILE A 162 5 5 HELIX 10 AB1 ASP A 172 ARG A 176 5 5 HELIX 11 AB2 LYS A 184 GLY A 188 5 5 HELIX 12 AB3 SER A 201 LEU A 209 1 9 HELIX 13 AB4 ASN A 212 ILE A 223 1 12 HELIX 14 AB5 ALA A 241 LEU A 249 1 9 HELIX 15 AB6 SER A 282 ALA A 293 1 12 HELIX 16 AB7 LEU A 306 ILE A 314 1 9 HELIX 17 AB8 ILE A 314 GLY A 320 1 7 HELIX 18 AB9 THR A 331 GLY A 339 1 9 HELIX 19 AC1 ALA A 342 LEU A 346 5 5 HELIX 20 AC2 ASN A 350 VAL A 371 1 22 HELIX 21 AC3 THR A 387 GLU A 400 1 14 HELIX 22 AC4 GLU A 409 GLY A 414 1 6 HELIX 23 AC5 GLY A 415 GLY A 417 5 3 HELIX 24 AC6 GLY A 418 GLY A 432 1 15 HELIX 25 AC7 THR A 445 ILE A 457 1 13 HELIX 26 AC8 THR A 466 LEU A 479 1 14 HELIX 27 AC9 PRO A 541 ARG A 545 5 5 HELIX 28 AD1 THR B 5 GLU B 12 1 8 HELIX 29 AD2 ASP B 17 LYS B 24 1 8 HELIX 30 AD3 SER B 28 ASP B 30 5 3 HELIX 31 AD4 TYR B 44 THR B 50 5 7 HELIX 32 AD5 GLY B 71 LEU B 86 1 16 HELIX 33 AD6 PRO B 101 LYS B 106 1 6 HELIX 34 AD7 PRO B 119 LEU B 125 1 7 HELIX 35 AD8 GLY B 129 THR B 152 1 24 HELIX 36 AD9 ASN B 158 ILE B 162 5 5 HELIX 37 AE1 ASP B 172 ARG B 176 5 5 HELIX 38 AE2 LYS B 184 GLY B 188 5 5 HELIX 39 AE3 SER B 201 LEU B 209 1 9 HELIX 40 AE4 ASN B 212 ASN B 222 1 11 HELIX 41 AE5 ARG B 237 ASN B 240 5 4 HELIX 42 AE6 ALA B 241 LEU B 249 1 9 HELIX 43 AE7 SER B 282 ALA B 293 1 12 HELIX 44 AE8 LEU B 306 ILE B 314 1 9 HELIX 45 AE9 ILE B 314 GLY B 320 1 7 HELIX 46 AF1 THR B 331 GLY B 339 1 9 HELIX 47 AF2 ALA B 342 LEU B 346 5 5 HELIX 48 AF3 ASN B 350 VAL B 371 1 22 HELIX 49 AF4 THR B 387 GLU B 400 1 14 HELIX 50 AF5 GLU B 409 GLY B 414 1 6 HELIX 51 AF6 GLY B 415 GLY B 417 5 3 HELIX 52 AF7 GLY B 418 GLU B 431 1 14 HELIX 53 AF8 THR B 445 ILE B 457 1 13 HELIX 54 AF9 THR B 466 LEU B 479 1 14 HELIX 55 AG1 PRO B 541 ILE B 546 5 6 SHEET 1 AA1 5 ILE A 32 TYR A 35 0 SHEET 2 AA1 5 LYS A 39 ILE A 42 -1 O LYS A 41 N GLU A 33 SHEET 3 AA1 5 ASN A 256 THR A 260 -1 O LEU A 257 N ALA A 40 SHEET 4 AA1 5 ALA A 115 VAL A 118 -1 N VAL A 118 O GLN A 259 SHEET 5 AA1 5 GLY A 111 GLY A 112 -1 N GLY A 112 O ALA A 115 SHEET 1 AA210 ILE A 32 TYR A 35 0 SHEET 2 AA210 LYS A 39 ILE A 42 -1 O LYS A 41 N GLU A 33 SHEET 3 AA210 ASN A 256 THR A 260 -1 O LEU A 257 N ALA A 40 SHEET 4 AA210 PRO A 265 LEU A 268 -1 O ALA A 266 N VAL A 258 SHEET 5 AA210 VAL A 90 LEU A 94 1 N ALA A 92 O ILE A 267 SHEET 6 AA210 TYR A 295 GLU A 299 1 O VAL A 297 N ALA A 93 SHEET 7 AA210 LYS A 56 ALA A 62 1 N ILE A 58 O VAL A 296 SHEET 8 AA210 ALA A 325 ALA A 330 1 O ILE A 327 N THR A 61 SHEET 9 AA210 ALA A 376 ASN A 381 1 O VAL A 377 N ILE A 328 SHEET 10 AA210 VAL A 405 SER A 408 1 O SER A 408 N ILE A 380 SHEET 1 AA3 2 ARG A 166 VAL A 168 0 SHEET 2 AA3 2 PHE A 195 ILE A 197 1 O ASP A 196 N ARG A 166 SHEET 1 AA4 2 VAL A 178 ASP A 180 0 SHEET 2 AA4 2 ARG A 191 ASP A 193 -1 O ASP A 193 N VAL A 178 SHEET 1 AA5 2 VAL A 224 TYR A 227 0 SHEET 2 AA5 2 PRO A 233 THR A 235 -1 O VAL A 234 N VAL A 225 SHEET 1 AA6 2 VAL A 463 TYR A 465 0 SHEET 2 AA6 2 ILE A 510 VAL A 512 1 O ILE A 510 N ASN A 464 SHEET 1 AA7 3 VAL A 486 ALA A 489 0 SHEET 2 AA7 3 PHE A 523 MET A 527 1 O VAL A 526 N ALA A 489 SHEET 3 AA7 3 GLN A 514 SER A 518 -1 N GLN A 514 O MET A 527 SHEET 1 AA8 2 ASP A 547 VAL A 548 0 SHEET 2 AA8 2 ILE A 554 SER A 555 -1 O SER A 555 N ASP A 547 SHEET 1 AA9 4 ILE B 32 TYR B 35 0 SHEET 2 AA9 4 LYS B 39 ILE B 42 -1 O LYS B 39 N TYR B 35 SHEET 3 AA9 4 ASN B 256 THR B 260 -1 O LEU B 257 N ALA B 40 SHEET 4 AA9 4 VAL B 117 VAL B 118 -1 N VAL B 118 O GLN B 259 SHEET 1 AB110 ILE B 32 TYR B 35 0 SHEET 2 AB110 LYS B 39 ILE B 42 -1 O LYS B 39 N TYR B 35 SHEET 3 AB110 ASN B 256 THR B 260 -1 O LEU B 257 N ALA B 40 SHEET 4 AB110 PRO B 265 LEU B 268 -1 O ALA B 266 N VAL B 258 SHEET 5 AB110 VAL B 90 LEU B 94 1 N ALA B 92 O ILE B 267 SHEET 6 AB110 TYR B 295 GLU B 299 1 O VAL B 297 N ALA B 93 SHEET 7 AB110 LYS B 56 ALA B 62 1 N ILE B 58 O VAL B 296 SHEET 8 AB110 ALA B 325 ALA B 330 1 O ILE B 327 N THR B 61 SHEET 9 AB110 ALA B 376 ASN B 381 1 O ALA B 379 N ILE B 328 SHEET 10 AB110 VAL B 405 SER B 408 1 O SER B 408 N ILE B 380 SHEET 1 AB2 2 ARG B 166 VAL B 168 0 SHEET 2 AB2 2 PHE B 195 ILE B 197 1 O ASP B 196 N ARG B 166 SHEET 1 AB3 2 VAL B 178 ASP B 180 0 SHEET 2 AB3 2 ARG B 191 ASP B 193 -1 O ASP B 193 N VAL B 178 SHEET 1 AB4 2 VAL B 224 TYR B 227 0 SHEET 2 AB4 2 PRO B 233 THR B 235 -1 O VAL B 234 N VAL B 225 SHEET 1 AB5 2 GLY B 462 TYR B 465 0 SHEET 2 AB5 2 THR B 509 VAL B 512 1 O ILE B 510 N ASN B 464 SHEET 1 AB6 3 VAL B 486 ALA B 489 0 SHEET 2 AB6 3 PHE B 523 MET B 527 1 O VAL B 524 N CYS B 487 SHEET 3 AB6 3 GLN B 514 SER B 518 -1 N GLN B 514 O MET B 527 SHEET 1 AB7 2 ASP B 547 VAL B 548 0 SHEET 2 AB7 2 ILE B 554 SER B 555 -1 O SER B 555 N ASP B 547 CISPEP 1 VAL A 118 PRO A 119 0 7.66 CISPEP 2 VAL B 118 PRO B 119 0 3.35 CRYST1 136.260 205.210 107.610 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009293 0.00000