HEADER HYDROLASE 08-JUN-22 7Y1S TITLE CRYSTAL STRUCTURE OF APO LEUCYL AMINOPEPTIDASE FROM BACILLUS TITLE 2 AMYLOLIQUEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCYL AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS AMYLOLIQUEFACIENS; SOURCE 3 ORGANISM_TAXID: 1390; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS M17, LEUCYL AMINOPEPTIDASE, LEUCINE AMINOPEPTIDASE, METALLOPEPTIDASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HUANG,Z.Q.JIANG REVDAT 2 29-NOV-23 7Y1S 1 REMARK REVDAT 1 05-JUL-23 7Y1S 0 JRNL AUTH P.HUANG,Z.Q.JIANG JRNL TITL CRYSTAL STRUCTURE OF APO LEUCYL AMINOPEPTIDASE FROM BACILLUS JRNL TITL 2 AMYLOLIQUEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 27669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.814 REMARK 3 FREE R VALUE TEST SET COUNT : 1332 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05500 REMARK 3 B22 (A**2) : -1.05500 REMARK 3 B33 (A**2) : 3.42200 REMARK 3 B12 (A**2) : -0.52700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.153 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3783 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5104 ; 1.855 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 7.338 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;37.235 ;24.220 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 655 ;20.197 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;24.148 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2820 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1762 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2601 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 127 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 5.573 ; 5.622 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2464 ; 7.512 ; 8.412 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1806 ; 8.269 ; 6.065 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2639 ;10.718 ; 8.848 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 7Y1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300030077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27747 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.748 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 30.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M SUCCINIC ACID (PH 7.0), 0.1 M REMARK 280 BIS-TRIS PROPANE (PH 7.0), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.51100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.51100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.51100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.51100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.51100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.51100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A 502 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 LYS A 142 REMARK 465 SER A 143 REMARK 465 ASN A 144 REMARK 465 GLU A 145 REMARK 465 PRO A 146 REMARK 465 ASP A 147 REMARK 465 LYS A 496 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 20 37.50 -83.78 REMARK 500 SER A 25 -159.33 -144.86 REMARK 500 ASN A 53 -5.48 84.99 REMARK 500 TRP A 252 87.45 -64.96 REMARK 500 ASP A 254 45.89 39.51 REMARK 500 ARG A 302 69.65 25.11 REMARK 500 ASP A 326 -8.84 80.49 REMARK 500 ALA A 344 59.04 -94.37 REMARK 500 ASN A 390 99.91 -163.73 REMARK 500 SER A 432 83.25 -168.38 REMARK 500 GLU A 451 -115.75 50.78 REMARK 500 ALA A 475 163.59 -44.93 REMARK 500 MET A 481 -22.55 83.86 REMARK 500 PRO A 494 -179.28 -60.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 261 NZ REMARK 620 2 ASP A 266 OD2 161.3 REMARK 620 3 ASP A 284 OD2 93.7 88.8 REMARK 620 4 GLU A 345 OE2 81.8 79.5 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 266 OD2 REMARK 620 2 ASP A 343 O 167.4 REMARK 620 3 ASP A 343 OD1 104.9 86.1 REMARK 620 4 GLU A 345 OE1 89.5 79.0 123.6 REMARK 620 N 1 2 3 DBREF1 7Y1S A 1 496 UNP A0A5C8IUB1_BACAM DBREF2 7Y1S A A0A5C8IUB1 1 496 SEQADV 7Y1S MET A -22 UNP A0A5C8IUB INITIATING METHIONINE SEQADV 7Y1S GLY A -21 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S SER A -20 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S SER A -19 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -18 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -17 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -16 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -15 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -14 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -13 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S SER A -12 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S SER A -11 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S GLY A -10 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S LEU A -9 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S VAL A -8 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S PRO A -7 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S ARG A -6 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S GLY A -5 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S SER A -4 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S HIS A -3 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S MET A -2 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S ALA A -1 UNP A0A5C8IUB EXPRESSION TAG SEQADV 7Y1S SER A 0 UNP A0A5C8IUB EXPRESSION TAG SEQRES 1 A 519 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 519 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET PHE TYR SEQRES 3 A 519 ALA SER ASP GLN LEU ARG HIS PRO GLU THR LEU VAL ILE SEQRES 4 A 519 GLY LEU PHE GLN LYS SER THR LEU SER GLY PHE THR LYS SEQRES 5 A 519 GLU LEU ASP ASP LYS LEU ASP GLY HIS LEU THR GLN LEU SEQRES 6 A 519 LEU LYS ASP GLY ASP VAL SER ALA LYS ARG ASN ARG VAL SEQRES 7 A 519 SER LYS VAL TYR PRO PRO ALA ALA THR GLY MET LYS ARG SEQRES 8 A 519 ILE TYR PHE ILE GLY MET GLY ARG GLU ALA ASP TYR SER SEQRES 9 A 519 PHE GLU ASP THR LYS GLU CYS PHE ALA ARG VAL PHE GLN SEQRES 10 A 519 GLN ILE HIS GLN ASP LYS LYS GLN GLU VAL SER VAL LEU SEQRES 11 A 519 LEU ASP THR PHE VAL SER GLY GLU VAL PRO ALA ALA ASP SEQRES 12 A 519 ALA ALA HIS ALA LEU SER GLU SER CYS LEU LEU ALA VAL SEQRES 13 A 519 TYR GLU VAL GLN ASP TYR LYS HIS LYS SER ASN GLU PRO SEQRES 14 A 519 ASP GLN GLU LEU THR SER VAL CYS ALA VAL THR GLU GLU SEQRES 15 A 519 ASP LEU ARG GLU VAL GLN ALA GLY LEU ASN VAL GLY ALA SEQRES 16 A 519 ALA TYR GLY GLN GLY THR ASN SER ALA ARG THR LEU VAL SEQRES 17 A 519 ASN MET PRO GLY ASN MET LEU THR ALA THR ASP LEU ALA SEQRES 18 A 519 SER TYR ALA ALA GLU LEU ALA ALA LYS TYR ASP PHE GLU SEQRES 19 A 519 CYS GLU ILE LEU GLU LYS ASP GLU MET GLU GLU LEU GLY SEQRES 20 A 519 MET GLY GLY LEU LEU ALA VAL ASN LYS GLY SER SER GLU SEQRES 21 A 519 PRO PRO LYS MET ILE VAL LEU LYS TYR GLN GLY LYS ASP SEQRES 22 A 519 GLN TRP GLU ASP VAL ILE GLY LEU VAL GLY LYS GLY ILE SEQRES 23 A 519 THR PHE ASP THR GLY GLY TYR SER ILE LYS PRO LYS THR SEQRES 24 A 519 GLY ILE VAL GLY MET LYS SER ASP MET GLY GLY ALA ALA SEQRES 25 A 519 SER VAL LEU GLY ALA MET GLU ILE ILE GLY GLU LEU ARG SEQRES 26 A 519 PRO GLU GLN ASN VAL LEU ALA VAL ILE PRO SER THR ASP SEQRES 27 A 519 ASN MET ILE SER SER ASP ALA MET LYS PRO ASP ASP VAL SEQRES 28 A 519 ILE VAL SER LEU SER GLY LYS THR ILE GLU ILE LEU ASN SEQRES 29 A 519 THR ASP ALA GLU GLY ARG LEU VAL LEU ALA ASP GLY ILE SEQRES 30 A 519 THR TYR ALA LYS GLN HIS GLY ALA SER VAL LEU VAL ASP SEQRES 31 A 519 VAL ALA THR LEU THR GLY GLY VAL ILE VAL ALA LEU GLY SEQRES 32 A 519 ASN GLU MET THR GLY ALA MET THR ASN ASN ALA ALA PHE SEQRES 33 A 519 TYR GLU GLN VAL ALA GLU SER ALA LYS GLU SER GLY GLU SEQRES 34 A 519 PRO ILE TRP GLN LEU PRO ILE THR GLU LYS ASP LYS LYS SEQRES 35 A 519 ARG VAL ARG ASN SER GLN MET ALA ASP LEU ASN ASN SER SEQRES 36 A 519 PRO GLY ARG GLU GLY HIS ALA ILE MET ALA GLY THR PHE SEQRES 37 A 519 LEU GLY GLU PHE ALA GLU ASN THR PRO TRP VAL HIS LEU SEQRES 38 A 519 ASP ILE ALA GLY THR ALA THR ALA ASN LYS ALA THR CYS SEQRES 39 A 519 PHE GLY PRO ALA GLY ALA THR GLY VAL MET ALA ARG THR SEQRES 40 A 519 LEU ALA VAL LEU THR GLU ARG PHE THR PRO GLU LYS HET CO3 A 501 4 HET NI A 502 1 HET ZN A 503 1 HET ZN A 504 1 HETNAM CO3 CARBONATE ION HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION FORMUL 2 CO3 C O3 2- FORMUL 3 NI NI 2+ FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *42(H2 O) HELIX 1 AA1 SER A 25 LEU A 35 1 11 HELIX 2 AA2 GLY A 37 ASP A 45 1 9 HELIX 3 AA3 SER A 81 LYS A 100 1 20 HELIX 4 AA4 LEU A 108 VAL A 112 5 5 HELIX 5 AA5 PRO A 117 TYR A 134 1 18 HELIX 6 AA6 ASP A 160 MET A 187 1 28 HELIX 7 AA7 PRO A 188 LEU A 192 5 5 HELIX 8 AA8 THR A 193 ASP A 209 1 17 HELIX 9 AA9 GLU A 216 GLY A 224 1 9 HELIX 10 AB1 MET A 225 LYS A 233 1 9 HELIX 11 AB2 GLY A 280 ASP A 284 5 5 HELIX 12 AB3 MET A 285 ARG A 302 1 18 HELIX 13 AB4 GLU A 345 HIS A 360 1 16 HELIX 14 AB5 THR A 372 GLY A 380 1 9 HELIX 15 AB6 ASN A 390 GLY A 405 1 16 HELIX 16 AB7 THR A 414 ASN A 423 1 10 HELIX 17 AB8 GLY A 437 GLU A 451 1 15 HELIX 18 AB9 MET A 481 PHE A 492 1 12 SHEET 1 AA1 6 PHE A 2 SER A 5 0 SHEET 2 AA1 6 SER A 152 VAL A 156 1 O ALA A 155 N TYR A 3 SHEET 3 AA1 6 GLU A 103 VAL A 106 1 N VAL A 106 O CYS A 154 SHEET 4 AA1 6 THR A 13 LEU A 18 1 N THR A 13 O SER A 105 SHEET 5 AA1 6 ARG A 68 GLY A 73 1 O TYR A 70 N LEU A 14 SHEET 6 AA1 6 VAL A 55 VAL A 58 -1 N SER A 56 O PHE A 71 SHEET 1 AA2 4 GLU A 211 LEU A 215 0 SHEET 2 AA2 4 LYS A 240 GLN A 247 -1 O VAL A 243 N GLU A 213 SHEET 3 AA2 4 ASN A 306 ASN A 316 -1 O ALA A 309 N LEU A 244 SHEET 4 AA2 4 GLY A 262 ASP A 266 1 N PHE A 265 O ASN A 316 SHEET 1 AA3 8 GLU A 211 LEU A 215 0 SHEET 2 AA3 8 LYS A 240 GLN A 247 -1 O VAL A 243 N GLU A 213 SHEET 3 AA3 8 ASN A 306 ASN A 316 -1 O ALA A 309 N LEU A 244 SHEET 4 AA3 8 VAL A 255 GLY A 260 1 N ILE A 256 O ASN A 306 SHEET 5 AA3 8 ALA A 362 ALA A 369 1 O SER A 363 N VAL A 255 SHEET 6 AA3 8 TRP A 455 ASP A 459 1 O LEU A 458 N ALA A 369 SHEET 7 AA3 8 THR A 384 THR A 388 -1 N MET A 387 O HIS A 457 SHEET 8 AA3 8 ILE A 408 GLN A 410 1 O TRP A 409 N ALA A 386 SHEET 1 AA4 3 VAL A 328 VAL A 330 0 SHEET 2 AA4 3 THR A 336 GLU A 338 -1 O ILE A 337 N ILE A 329 SHEET 3 AA4 3 LEU A 429 ASN A 430 1 O LEU A 429 N GLU A 338 SHEET 1 AA5 2 THR A 465 ALA A 466 0 SHEET 2 AA5 2 GLY A 476 ALA A 477 -1 O GLY A 476 N ALA A 466 LINK NZ LYS A 261 ZN ZN A 504 1555 1555 2.11 LINK OD2 ASP A 266 ZN ZN A 503 1555 1555 2.12 LINK OD2 ASP A 266 ZN ZN A 504 1555 1555 2.18 LINK OD2 ASP A 284 ZN ZN A 504 1555 1555 2.01 LINK O ASP A 343 ZN ZN A 503 1555 1555 2.16 LINK OD1 ASP A 343 ZN ZN A 503 1555 1555 2.10 LINK OE1 GLU A 345 ZN ZN A 503 1555 1555 2.11 LINK OE2 GLU A 345 ZN ZN A 504 1555 1555 2.11 CRYST1 200.245 200.245 89.022 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004994 0.002883 0.000000 0.00000 SCALE2 0.000000 0.005766 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011233 0.00000