HEADER NUCLEAR PROTEIN/DNA 22-JUN-22 7Y7I TITLE CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1,HISTONE H3-LIKE CENTROMERIC PROTEIN A; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: HISTONE H3/L,CENP-A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HISTONE H2A TYPE 1-B/E; COMPND 12 CHAIN: C, G; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: HISTONE H2B TYPE 1-J; COMPND 17 CHAIN: D, H; COMPND 18 SYNONYM: HISTONE H2B.1,HISTONE H2B.R,H2B/R; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 5; COMPND 21 MOLECULE: CHAINS: I; COMPND 22 CHAIN: I; COMPND 23 ENGINEERED: YES; COMPND 24 OTHER_DETAILS: EXTRACTED FROM ESCHERICHIA COLI AS SYNTHETIC CONSTRUCT COMPND 25 (PLASMID) AND PURIFIED; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: CHAINS: J; COMPND 28 CHAIN: J; COMPND 29 ENGINEERED: YES; COMPND 30 OTHER_DETAILS: EXTRACTED FROM ESCHERICHIA COLI AS SYNTHETIC CONSTRUCT COMPND 31 (PLASMID) AND PURIFIED; COMPND 32 MOL_ID: 7; COMPND 33 MOLECULE: MYB-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 34 CHAIN: K, L; COMPND 35 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: H3C1, CENPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H4C1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: HIST1H2BJ; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 MOL_ID: 5; SOURCE 29 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 30 ORGANISM_TAXID: 32630; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 33 MOL_ID: 6; SOURCE 34 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 35 ORGANISM_TAXID: 32630; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 MOL_ID: 7; SOURCE 39 SYNTHETIC: YES; SOURCE 40 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 41 ORGANISM_COMMON: CHICKEN; SOURCE 42 ORGANISM_TAXID: 9031 KEYWDS CENTROMERE, KINETOCHORE, NUCLEAR PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR M.ARIYOSHI,H.JIANG,F.MAKINO,T.FUKAGAWA REVDAT 2 03-JUL-24 7Y7I 1 JRNL REMARK REVDAT 1 13-JUL-22 7Y7I 0 JRNL AUTH H.JIANG,M.ARIYOSHI,R.WATANABE,F.MAKINO,K.NAMBA,T.FUKAGAWA JRNL TITL THE CRYO-EM STRUCTURE OF THE CENP-A NUCLEOSOME IN COMPLEX JRNL TITL 2 WITH GGKNL2. JRNL REF BIORXIV 2022 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2022.06.24.497480 REMARK 2 REMARK 2 RESOLUTION. 3.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, GCTF, PHENIX, RELION, RELION, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5Z23 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL LOCAL FITTING AND REFINEMENT WERE REMARK 3 PERFORMED USING PHENIX. THE COMPLEX MODEL WAS ITERATIVELY REMARK 3 MODIFIED IN COOT AND REFINED IN PHENIX. REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.420 REMARK 3 NUMBER OF PARTICLES : 270464 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7Y7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300030359. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THE CENP-C LIKE MOTIF OF REMARK 245 CHICKEN KNL2 IN COMPLEX WITH REMARK 245 THE CENP-A NUCLEOSOME; CHIMERIC REMARK 245 CENP-A; NUCLEOSOME; DNA; MYB- REMARK 245 LIKE DOMAIN-CONTAINING PROTEIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : THE CENP-C LIKE MOTIF PEPTIDE REMARK 245 OF CHICKEN KNL2 WAS PREPARED BY PEPTIDE SYNTHESIS. THE CENP-A REMARK 245 NUCLEOSOME WAS RECONSTITUTED IN VITRO USING RECOMBINANT PROTEINS, REMARK 245 INCUBATED WITH THE KNL2 PEPTIDE AND CONCENTRATED. REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9450 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL CRYO ARM 300 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : 49000 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 PHE A 140 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 4 REMARK 465 GLY C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 LYS C 10 REMARK 465 ALA C 11 REMARK 465 LYS C 119 REMARK 465 LYS C 120 REMARK 465 THR C 121 REMARK 465 GLU C 122 REMARK 465 SER C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 LYS C 126 REMARK 465 ALA C 127 REMARK 465 LYS C 128 REMARK 465 GLY C 129 REMARK 465 LYS C 130 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 PRO D 1 REMARK 465 GLU D 2 REMARK 465 PRO D 3 REMARK 465 ALA D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 GLY D 13 REMARK 465 SER D 14 REMARK 465 LYS D 15 REMARK 465 LYS D 16 REMARK 465 ALA D 17 REMARK 465 VAL D 18 REMARK 465 THR D 19 REMARK 465 LYS D 20 REMARK 465 ALA D 21 REMARK 465 GLN D 22 REMARK 465 LYS D 23 REMARK 465 LYS D 24 REMARK 465 ASP D 25 REMARK 465 GLY D 26 REMARK 465 LYS D 27 REMARK 465 LYS D 28 REMARK 465 ARG D 29 REMARK 465 ALA D 124 REMARK 465 LYS D 125 REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 HIS E -1 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 LEU E 135 REMARK 465 GLN E 136 REMARK 465 GLY E 137 REMARK 465 GLU E 138 REMARK 465 GLY E 139 REMARK 465 PHE E 140 REMARK 465 GLY F -3 REMARK 465 SER F -2 REMARK 465 HIS F -1 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 ASP F 24 REMARK 465 MET G 1 REMARK 465 SER G 2 REMARK 465 GLY G 3 REMARK 465 ARG G 4 REMARK 465 GLY G 5 REMARK 465 LYS G 6 REMARK 465 GLN G 7 REMARK 465 GLY G 8 REMARK 465 GLY G 9 REMARK 465 LYS G 10 REMARK 465 ALA G 11 REMARK 465 ARG G 12 REMARK 465 ALA G 13 REMARK 465 LYS G 119 REMARK 465 LYS G 120 REMARK 465 THR G 121 REMARK 465 GLU G 122 REMARK 465 SER G 123 REMARK 465 HIS G 124 REMARK 465 HIS G 125 REMARK 465 LYS G 126 REMARK 465 ALA G 127 REMARK 465 LYS G 128 REMARK 465 GLY G 129 REMARK 465 LYS G 130 REMARK 465 GLY H -3 REMARK 465 SER H -2 REMARK 465 HIS H -1 REMARK 465 MET H 0 REMARK 465 PRO H 1 REMARK 465 GLU H 2 REMARK 465 PRO H 3 REMARK 465 ALA H 4 REMARK 465 LYS H 5 REMARK 465 SER H 6 REMARK 465 ALA H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 PRO H 10 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 465 GLY H 13 REMARK 465 SER H 14 REMARK 465 LYS H 15 REMARK 465 LYS H 16 REMARK 465 ALA H 17 REMARK 465 VAL H 18 REMARK 465 THR H 19 REMARK 465 LYS H 20 REMARK 465 ALA H 21 REMARK 465 GLN H 22 REMARK 465 LYS H 23 REMARK 465 LYS H 24 REMARK 465 ASP H 25 REMARK 465 GLY H 26 REMARK 465 LYS H 27 REMARK 465 LYS H 28 REMARK 465 ARG H 29 REMARK 465 LYS H 30 REMARK 465 ALA H 124 REMARK 465 LYS H 125 REMARK 465 SER K 517 REMARK 465 SER K 518 REMARK 465 ASN K 519 REMARK 465 GLY K 520 REMARK 465 GLY K 555 REMARK 465 THR K 556 REMARK 465 ASP K 557 REMARK 465 TYR K 558 REMARK 465 LEU K 559 REMARK 465 SER K 560 REMARK 465 SER L 517 REMARK 465 SER L 518 REMARK 465 ASN L 519 REMARK 465 GLY L 520 REMARK 465 GLY L 555 REMARK 465 THR L 556 REMARK 465 ASP L 557 REMARK 465 TYR L 558 REMARK 465 LEU L 559 REMARK 465 SER L 560 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG I 75 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG J 162 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC J 190 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC J 190 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT J 202 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 13 -175.08 61.18 REMARK 500 ARG C 100 30.98 -97.56 REMARK 500 ARG E 80 65.43 61.22 REMARK 500 ARG G 100 33.67 -96.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-33666 RELATED DB: EMDB REMARK 900 CHICKEN KNL2 IN COMPLEX WITH THE CENP-A NUCLEOSOME DBREF 7Y7I A 0 63 UNP P68431 H31_HUMAN 1 64 DBREF 7Y7I A 64 140 UNP Q6XXM1 CENPA_CHICK 55 131 DBREF 7Y7I B 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7Y7I C 1 130 UNP P04908 H2A1B_HUMAN 1 130 DBREF 7Y7I D 0 125 UNP P06899 H2B1J_HUMAN 1 126 DBREF 7Y7I E 0 63 UNP P68431 H31_HUMAN 1 64 DBREF 7Y7I E 64 140 UNP Q6XXM1 CENPA_CHICK 55 131 DBREF 7Y7I F 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7Y7I G 1 130 UNP P04908 H2A1B_HUMAN 1 130 DBREF 7Y7I H 0 125 UNP P06899 H2B1J_HUMAN 1 126 DBREF 7Y7I I 2 144 PDB 7Y7I 7Y7I 2 144 DBREF 7Y7I J 147 289 PDB 7Y7I 7Y7I 147 289 DBREF 7Y7I K 517 560 UNP F1NE16 F1NE16_CHICK 517 560 DBREF 7Y7I L 517 560 UNP F1NE16 F1NE16_CHICK 517 560 SEQADV 7Y7I GLY A -3 UNP P68431 EXPRESSION TAG SEQADV 7Y7I SER A -2 UNP P68431 EXPRESSION TAG SEQADV 7Y7I HIS A -1 UNP P68431 EXPRESSION TAG SEQADV 7Y7I GLY B -3 UNP P62805 EXPRESSION TAG SEQADV 7Y7I SER B -2 UNP P62805 EXPRESSION TAG SEQADV 7Y7I HIS B -1 UNP P62805 EXPRESSION TAG SEQADV 7Y7I GLY D -3 UNP P06899 EXPRESSION TAG SEQADV 7Y7I SER D -2 UNP P06899 EXPRESSION TAG SEQADV 7Y7I HIS D -1 UNP P06899 EXPRESSION TAG SEQADV 7Y7I GLY E -3 UNP P68431 EXPRESSION TAG SEQADV 7Y7I SER E -2 UNP P68431 EXPRESSION TAG SEQADV 7Y7I HIS E -1 UNP P68431 EXPRESSION TAG SEQADV 7Y7I GLY F -3 UNP P62805 EXPRESSION TAG SEQADV 7Y7I SER F -2 UNP P62805 EXPRESSION TAG SEQADV 7Y7I HIS F -1 UNP P62805 EXPRESSION TAG SEQADV 7Y7I GLY H -3 UNP P06899 EXPRESSION TAG SEQADV 7Y7I SER H -2 UNP P06899 EXPRESSION TAG SEQADV 7Y7I HIS H -1 UNP P06899 EXPRESSION TAG SEQRES 1 A 144 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 A 144 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 A 144 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 A 144 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 A 144 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 A 144 ILE ARG ARG GLN PRO PHE ALA ARG VAL VAL ARG GLU ILE SEQRES 7 A 144 CYS LEU LEU PHE THR ARG GLY VAL ASP TYR ARG TRP GLN SEQRES 8 A 144 ALA MET ALA LEU LEU ALA LEU GLN GLU ALA ALA GLU ALA SEQRES 9 A 144 PHE LEU VAL HIS LEU LEU GLU ASP ALA TYR LEU CYS SER SEQRES 10 A 144 LEU HIS ALA ARG ARG VAL THR LEU TYR PRO LYS ASP LEU SEQRES 11 A 144 GLN LEU ALA ARG ARG LEU ARG GLY LEU GLN GLY GLU GLY SEQRES 12 A 144 PHE SEQRES 1 B 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 B 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 B 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 B 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 B 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 B 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 B 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 B 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 B 106 GLY GLY SEQRES 1 C 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA SEQRES 2 C 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 C 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 C 130 TYR SER GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 C 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 C 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 C 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP SEQRES 8 C 130 GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA SEQRES 9 C 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU SEQRES 10 C 130 PRO LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 D 129 GLY SER HIS MET PRO GLU PRO ALA LYS SER ALA PRO ALA SEQRES 2 D 129 PRO LYS LYS GLY SER LYS LYS ALA VAL THR LYS ALA GLN SEQRES 3 D 129 LYS LYS ASP GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SEQRES 4 D 129 SER TYR SER ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL SEQRES 5 D 129 HIS PRO ASP THR GLY ILE SER SER LYS ALA MET GLY ILE SEQRES 6 D 129 MET ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 D 129 GLY GLU ALA SER ARG LEU ALA HIS TYR ASN LYS ARG SER SEQRES 8 D 129 THR ILE THR SER ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 D 129 LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 D 129 GLY THR LYS ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 144 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 E 144 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 E 144 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 E 144 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 E 144 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 E 144 ILE ARG ARG GLN PRO PHE ALA ARG VAL VAL ARG GLU ILE SEQRES 7 E 144 CYS LEU LEU PHE THR ARG GLY VAL ASP TYR ARG TRP GLN SEQRES 8 E 144 ALA MET ALA LEU LEU ALA LEU GLN GLU ALA ALA GLU ALA SEQRES 9 E 144 PHE LEU VAL HIS LEU LEU GLU ASP ALA TYR LEU CYS SER SEQRES 10 E 144 LEU HIS ALA ARG ARG VAL THR LEU TYR PRO LYS ASP LEU SEQRES 11 E 144 GLN LEU ALA ARG ARG LEU ARG GLY LEU GLN GLY GLU GLY SEQRES 12 E 144 PHE SEQRES 1 F 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 F 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 F 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 F 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 F 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 F 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 F 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 F 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 F 106 GLY GLY SEQRES 1 G 130 MET SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA SEQRES 2 G 130 LYS ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE SEQRES 3 G 130 PRO VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN SEQRES 4 G 130 TYR SER GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU SEQRES 5 G 130 ALA ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU SEQRES 6 G 130 LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG SEQRES 7 G 130 ILE ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP SEQRES 8 G 130 GLU GLU LEU ASN LYS LEU LEU GLY ARG VAL THR ILE ALA SEQRES 9 G 130 GLN GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU SEQRES 10 G 130 PRO LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 H 129 GLY SER HIS MET PRO GLU PRO ALA LYS SER ALA PRO ALA SEQRES 2 H 129 PRO LYS LYS GLY SER LYS LYS ALA VAL THR LYS ALA GLN SEQRES 3 H 129 LYS LYS ASP GLY LYS LYS ARG LYS ARG SER ARG LYS GLU SEQRES 4 H 129 SER TYR SER ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL SEQRES 5 H 129 HIS PRO ASP THR GLY ILE SER SER LYS ALA MET GLY ILE SEQRES 6 H 129 MET ASN SER PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA SEQRES 7 H 129 GLY GLU ALA SER ARG LEU ALA HIS TYR ASN LYS ARG SER SEQRES 8 H 129 THR ILE THR SER ARG GLU ILE GLN THR ALA VAL ARG LEU SEQRES 9 H 129 LEU LEU PRO GLY GLU LEU ALA LYS HIS ALA VAL SER GLU SEQRES 10 H 129 GLY THR LYS ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 I 143 DT DC DA DG DA DA DT DC DC DC DG DG DT SEQRES 2 I 143 DG DC DC DG DA DG DG DC DC DG DC DT DC SEQRES 3 I 143 DA DA DT DT DG DG DT DC DG DT DA DG DA SEQRES 4 I 143 DC DA DG DC DT DC DT DA DG DC DA DC DC SEQRES 5 I 143 DG DC DT DT DA DA DA DC DG DC DA DC DG SEQRES 6 I 143 DT DA DC DG DC DG DC DT DG DT DC DC DC SEQRES 7 I 143 DC DC DG DC DG DT DT DT DT DA DA DC DC SEQRES 8 I 143 DG DC DC DA DA DG DG DG DG DA DT DT DA SEQRES 9 I 143 DC DT DC DC DC DT DA DG DT DC DT DC DC SEQRES 10 I 143 DA DG DG DC DA DC DG DA DG DT DC DA DG SEQRES 11 I 143 DA DT DA DT DA DT DA DC DA DT DC DG DA SEQRES 1 J 143 DT DC DG DA DT DG DT DA DT DA DT DA DT SEQRES 2 J 143 DC DT DG DA DC DT DC DG DT DG DC DC DT SEQRES 3 J 143 DG DG DA DG DA DC DT DA DG DG DG DA DG SEQRES 4 J 143 DT DA DA DT DC DC DC DC DT DT DG DG DC SEQRES 5 J 143 DG DG DT DT DA DA DA DA DC DG DC DG DG SEQRES 6 J 143 DG DG DG DA DC DA DG DC DG DC DG DT DA SEQRES 7 J 143 DC DG DT DG DC DG DT DT DT DA DA DG DC SEQRES 8 J 143 DG DG DT DG DC DT DA DG DA DG DC DT DG SEQRES 9 J 143 DT DC DT DA DC DG DA DC DC DA DA DT DT SEQRES 10 J 143 DG DA DG DC DG DG DC DC DT DC DG DG DC SEQRES 11 J 143 DA DC DC DG DG DG DA DT DT DC DT DG DA SEQRES 1 K 44 SER SER ASN GLY ILE TYR THR ARG SER GLY ARG LEU VAL SEQRES 2 K 44 LYS PRO PRO LEU SER PHE TRP CYS GLY GLU ARG GLU PHE SEQRES 3 K 44 VAL ASP ARG GLU LEU ASN VAL THR ILE GLN LYS GLY GLY SEQRES 4 K 44 THR ASP TYR LEU SER SEQRES 1 L 44 SER SER ASN GLY ILE TYR THR ARG SER GLY ARG LEU VAL SEQRES 2 L 44 LYS PRO PRO LEU SER PHE TRP CYS GLY GLU ARG GLU PHE SEQRES 3 L 44 VAL ASP ARG GLU LEU ASN VAL THR ILE GLN LYS GLY GLY SEQRES 4 L 44 THR ASP TYR LEU SER HELIX 1 AA1 GLY A 44 GLN A 55 1 12 HELIX 2 AA2 ARG A 63 ARG A 80 1 18 HELIX 3 AA3 GLN A 87 ALA A 116 1 30 HELIX 4 AA4 TYR A 122 ARG A 133 1 12 HELIX 5 AA5 GLY A 134 GLY A 139 1 6 HELIX 6 AA6 ASP B 24 ILE B 29 5 6 HELIX 7 AA7 THR B 30 GLY B 41 1 12 HELIX 8 AA8 LEU B 49 ALA B 76 1 28 HELIX 9 AA9 THR B 82 GLY B 94 1 13 HELIX 10 AB1 THR C 17 GLY C 23 1 7 HELIX 11 AB2 VAL C 28 GLY C 38 1 11 HELIX 12 AB3 GLY C 47 ASN C 74 1 28 HELIX 13 AB4 ILE C 80 ASN C 90 1 11 HELIX 14 AB5 ASP C 91 LEU C 98 1 8 HELIX 15 AB6 TYR D 37 HIS D 49 1 13 HELIX 16 AB7 SER D 55 ASN D 84 1 30 HELIX 17 AB8 THR D 90 LEU D 102 1 13 HELIX 18 AB9 GLY D 104 SER D 123 1 20 HELIX 19 AC1 GLY E 44 SER E 57 1 14 HELIX 20 AC2 ARG E 63 ARG E 80 1 18 HELIX 21 AC3 GLN E 87 ALA E 116 1 30 HELIX 22 AC4 TYR E 122 ARG E 133 1 12 HELIX 23 AC5 ASN F 25 ILE F 29 5 5 HELIX 24 AC6 THR F 30 GLY F 41 1 12 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 GLY F 94 1 13 HELIX 27 AC9 THR G 17 ALA G 22 1 6 HELIX 28 AD1 VAL G 28 GLY G 38 1 11 HELIX 29 AD2 ALA G 46 ASN G 74 1 29 HELIX 30 AD3 ILE G 80 ARG G 89 1 10 HELIX 31 AD4 ASP G 91 LEU G 98 1 8 HELIX 32 AD5 SER H 38 HIS H 49 1 12 HELIX 33 AD6 SER H 55 ASN H 84 1 30 HELIX 34 AD7 THR H 90 LEU H 102 1 13 HELIX 35 AD8 GLY H 104 SER H 123 1 20 HELIX 36 AD9 SER K 534 GLY K 538 5 5 HELIX 37 AE1 SER L 534 GLY L 538 5 5 SHEET 1 AA1 2 ARG A 85 TRP A 86 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 85 SHEET 1 AA2 2 THR A 120 LEU A 121 0 SHEET 2 AA2 2 ARG B 45 ILE B 46 1 O ARG B 45 N LEU A 121 SHEET 1 AA3 2 THR B 96 TYR B 98 0 SHEET 2 AA3 2 VAL G 101 ILE G 103 1 O THR G 102 N THR B 96 SHEET 1 AA4 2 ARG C 43 VAL C 44 0 SHEET 2 AA4 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 43 SHEET 1 AA5 2 ARG C 78 ILE C 79 0 SHEET 2 AA5 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 79 SHEET 1 AA6 2 VAL C 101 THR C 102 0 SHEET 2 AA6 2 THR F 96 LEU F 97 1 O THR F 96 N THR C 102 SHEET 1 AA7 2 ARG E 85 TRP E 86 0 SHEET 2 AA7 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 85 SHEET 1 AA8 2 THR E 120 LEU E 121 0 SHEET 2 AA8 2 ARG F 45 ILE F 46 1 O ARG F 45 N LEU E 121 SHEET 1 AA9 2 ARG G 43 VAL G 44 0 SHEET 2 AA9 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 43 SHEET 1 AB1 2 ARG G 78 ILE G 79 0 SHEET 2 AB1 2 GLY H 53 ILE H 54 1 O GLY H 53 N ILE G 79 SHEET 1 AB2 2 GLU K 541 VAL K 543 0 SHEET 2 AB2 2 VAL K 549 ILE K 551 -1 O THR K 550 N PHE K 542 SHEET 1 AB3 2 ARG L 540 PHE L 542 0 SHEET 2 AB3 2 THR L 550 GLN L 552 -1 O THR L 550 N PHE L 542 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 846 GLY A 139 TER 1485 GLY B 102 TER 2312 PRO C 118 TER 3053 SER D 123 TER 3865 GLY E 134 TER 4485 GLY F 102 TER 5296 PRO G 118 TER 6028 SER H 123 TER 8944 DA I 144 TER 11893 DA J 289 TER 12175 GLY K 554 TER 12457 GLY L 554 MASTER 441 0 0 37 24 0 0 612445 12 0 112 END