HEADER PROTEIN FIBRIL 24-JUN-22 7Y8Q TITLE AMYLOID-BETA ASSEMBLAGE ON GM1-CONTAINING MEMBRANES COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID-BETA PROTEIN 40; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 SYNONYM: ABETA40,BETA-APP40; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APP, A4, AD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMYLOID, ALZHEIMER'S DISEASE, ASSEMBLAGE, MEMBRANE, PROTEIN FIBRIL EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR M.YAGI-UTSUMI,S.G.ITOH,H.OKUMURA,K.YANAGISAWA,K.KATO,K.NISHIMURA REVDAT 3 15-MAY-24 7Y8Q 1 REMARK REVDAT 2 20-SEP-23 7Y8Q 1 JRNL REVDAT 1 05-JUL-23 7Y8Q 0 JRNL AUTH M.YAGI-UTSUMI,S.G.ITOH,H.OKUMURA,K.YANAGISAWA,K.KATO, JRNL AUTH 2 K.NISHIMURA JRNL TITL THE DOUBLE-LAYERED STRUCTURE OF AMYLOID-BETA ASSEMBLAGE ON JRNL TITL 2 GM1-CONTAINING MEMBRANES CATALYTICALLY PROMOTES JRNL TITL 3 FIBRILLIZATION. JRNL REF ACS CHEM NEUROSCI V. 14 2648 2023 JRNL REFN ESSN 1948-7193 JRNL PMID 37482658 JRNL DOI 10.1021/ACSCHEMNEURO.3C00192 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7Y8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030300. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] AMYLOID REMARK 210 BETA(1-40), 8 MM GM1, 2 MM DMPC, REMARK 210 NONE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D DARR/RAD; 2D NCO; 2D NCA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PHE A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 TYR A 10 REMARK 465 GLU A 11 REMARK 465 ASP B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 PHE B 4 REMARK 465 ARG B 5 REMARK 465 HIS B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 TYR B 10 REMARK 465 GLU B 11 REMARK 465 ASP C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 PHE C 4 REMARK 465 ARG C 5 REMARK 465 HIS C 6 REMARK 465 ASP C 7 REMARK 465 SER C 8 REMARK 465 GLY C 9 REMARK 465 TYR C 10 REMARK 465 GLU C 11 REMARK 465 ASP D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 3 REMARK 465 PHE D 4 REMARK 465 ARG D 5 REMARK 465 HIS D 6 REMARK 465 ASP D 7 REMARK 465 SER D 8 REMARK 465 GLY D 9 REMARK 465 TYR D 10 REMARK 465 GLU D 11 REMARK 465 ASP E 1 REMARK 465 ALA E 2 REMARK 465 GLU E 3 REMARK 465 PHE E 4 REMARK 465 ARG E 5 REMARK 465 HIS E 6 REMARK 465 ASP E 7 REMARK 465 SER E 8 REMARK 465 GLY E 9 REMARK 465 TYR E 10 REMARK 465 GLU E 11 REMARK 465 ASP F 1 REMARK 465 ALA F 2 REMARK 465 GLU F 3 REMARK 465 PHE F 4 REMARK 465 ARG F 5 REMARK 465 HIS F 6 REMARK 465 ASP F 7 REMARK 465 SER F 8 REMARK 465 GLY F 9 REMARK 465 TYR F 10 REMARK 465 GLU F 11 REMARK 465 ASP G 1 REMARK 465 ALA G 2 REMARK 465 GLU G 3 REMARK 465 PHE G 4 REMARK 465 ARG G 5 REMARK 465 HIS G 6 REMARK 465 ASP G 7 REMARK 465 SER G 8 REMARK 465 GLY G 9 REMARK 465 TYR G 10 REMARK 465 GLU G 11 REMARK 465 ASP H 1 REMARK 465 ALA H 2 REMARK 465 GLU H 3 REMARK 465 PHE H 4 REMARK 465 ARG H 5 REMARK 465 HIS H 6 REMARK 465 ASP H 7 REMARK 465 SER H 8 REMARK 465 GLY H 9 REMARK 465 TYR H 10 REMARK 465 GLU H 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 SER A 26 CA SER A 26 CB 0.092 REMARK 500 1 PHE B 19 CG PHE B 19 CD1 0.102 REMARK 500 2 HIS G 14 CG HIS G 14 CD2 0.074 REMARK 500 3 HIS A 14 CG HIS A 14 CD2 0.056 REMARK 500 3 HIS B 13 CG HIS B 13 CD2 0.066 REMARK 500 3 SER D 26 CB SER D 26 OG 0.080 REMARK 500 4 HIS B 13 CG HIS B 13 CD2 0.074 REMARK 500 4 HIS E 13 CG HIS E 13 CD2 0.055 REMARK 500 8 HIS B 14 CG HIS B 14 CD2 0.057 REMARK 500 8 GLY G 37 CA GLY G 37 C 0.098 REMARK 500 9 HIS B 14 CG HIS B 14 CD2 0.056 REMARK 500 9 PHE C 19 CG PHE C 19 CD2 0.100 REMARK 500 9 HIS G 13 CG HIS G 13 CD2 0.058 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 VAL A 12 CA - CB - CG1 ANGL. DEV. = 10.5 DEGREES REMARK 500 1 PHE A 19 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 ALA A 30 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 1 PHE B 19 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 PHE B 19 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 LYS B 28 C - N - CA ANGL. DEV. = 19.8 DEGREES REMARK 500 1 GLY B 29 CA - C - N ANGL. DEV. = -14.3 DEGREES REMARK 500 1 HIS C 13 CB - CG - CD2 ANGL. DEV. = -9.8 DEGREES REMARK 500 1 GLU C 22 OE1 - CD - OE2 ANGL. DEV. = -9.5 DEGREES REMARK 500 1 VAL C 24 CA - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 1 LYS C 28 C - N - CA ANGL. DEV. = 16.7 DEGREES REMARK 500 1 VAL C 36 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 1 VAL C 40 CA - CB - CG2 ANGL. DEV. = 10.2 DEGREES REMARK 500 1 VAL D 18 CG1 - CB - CG2 ANGL. DEV. = -12.5 DEGREES REMARK 500 1 PHE D 20 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 PHE D 20 CG - CD2 - CE2 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 MET E 35 C - N - CA ANGL. DEV. = 26.1 DEGREES REMARK 500 1 ASP F 23 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 LYS F 28 C - N - CA ANGL. DEV. = 18.6 DEGREES REMARK 500 1 ILE F 31 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 1 ILE F 32 C - N - CA ANGL. DEV. = 24.5 DEGREES REMARK 500 1 VAL F 36 CA - CB - CG2 ANGL. DEV. = 10.3 DEGREES REMARK 500 1 VAL G 18 CA - CB - CG1 ANGL. DEV. = 9.5 DEGREES REMARK 500 1 PHE G 20 CB - CG - CD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 2 GLU A 22 OE1 - CD - OE2 ANGL. DEV. = -8.9 DEGREES REMARK 500 2 VAL A 40 CG1 - CB - CG2 ANGL. DEV. = -12.4 DEGREES REMARK 500 2 LEU B 17 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 2 LYS B 28 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 2 PHE D 19 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 2 PHE D 20 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 2 VAL D 24 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 2 MET E 35 C - N - CA ANGL. DEV. = 22.4 DEGREES REMARK 500 2 VAL F 12 CG1 - CB - CG2 ANGL. DEV. = -11.6 DEGREES REMARK 500 2 VAL F 12 CA - CB - CG1 ANGL. DEV. = 9.3 DEGREES REMARK 500 2 ILE F 31 O - C - N ANGL. DEV. = 9.6 DEGREES REMARK 500 2 VAL G 12 CA - CB - CG1 ANGL. DEV. = 11.5 DEGREES REMARK 500 2 PHE G 20 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 MET G 35 CA - CB - CG ANGL. DEV. = -10.7 DEGREES REMARK 500 2 MET G 35 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 2 VAL G 39 CA - CB - CG2 ANGL. DEV. = 11.2 DEGREES REMARK 500 3 ALA A 30 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 3 LEU A 34 CB - CA - C ANGL. DEV. = 13.0 DEGREES REMARK 500 3 VAL A 36 CG1 - CB - CG2 ANGL. DEV. = -13.7 DEGREES REMARK 500 3 LYS B 28 C - N - CA ANGL. DEV. = 18.7 DEGREES REMARK 500 3 PHE D 20 CG - CD1 - CE1 ANGL. DEV. = -9.0 DEGREES REMARK 500 3 LYS E 16 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 3 ASP E 23 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 3 ILE E 32 CG1 - CB - CG2 ANGL. DEV. = -15.4 DEGREES REMARK 500 3 MET E 35 C - N - CA ANGL. DEV. = 19.8 DEGREES REMARK 500 3 PHE G 20 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 194 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER D 26 128.61 58.85 REMARK 500 1 MET D 35 101.51 -161.02 REMARK 500 1 SER E 26 120.44 55.19 REMARK 500 1 SER H 26 118.49 64.57 REMARK 500 2 SER C 26 126.67 -22.06 REMARK 500 2 SER D 26 128.28 57.79 REMARK 500 2 MET F 35 113.26 -164.12 REMARK 500 2 SER G 26 137.17 -37.51 REMARK 500 2 SER H 26 126.52 66.29 REMARK 500 3 SER D 26 131.78 69.04 REMARK 500 3 LEU F 34 115.97 -162.33 REMARK 500 3 SER H 26 117.30 53.96 REMARK 500 4 SER C 26 130.08 -39.57 REMARK 500 4 SER D 26 125.96 61.00 REMARK 500 4 SER H 26 134.39 59.84 REMARK 500 5 LEU A 34 114.57 -160.29 REMARK 500 5 LEU B 34 111.04 -161.23 REMARK 500 5 SER D 26 121.17 55.89 REMARK 500 5 SER H 26 124.85 53.71 REMARK 500 6 SER D 26 125.17 66.28 REMARK 500 6 LYS F 28 -169.31 -162.95 REMARK 500 6 SER H 26 120.43 57.76 REMARK 500 7 LEU A 34 114.37 -160.05 REMARK 500 7 SER C 26 128.36 -38.69 REMARK 500 7 SER D 26 128.74 51.13 REMARK 500 7 MET D 35 106.46 -162.64 REMARK 500 7 MET G 35 112.67 -161.03 REMARK 500 7 SER H 26 125.62 65.63 REMARK 500 8 SER D 26 127.20 66.83 REMARK 500 8 SER F 26 120.86 -38.60 REMARK 500 8 MET F 35 115.41 -161.30 REMARK 500 8 SER H 26 135.18 57.00 REMARK 500 9 SER C 26 131.99 -32.98 REMARK 500 9 LEU C 34 118.94 -161.41 REMARK 500 9 SER D 26 128.01 64.94 REMARK 500 9 MET D 35 114.66 -161.86 REMARK 500 9 LEU F 34 119.74 -161.00 REMARK 500 9 SER H 26 119.44 66.69 REMARK 500 10 MET C 35 111.77 -160.62 REMARK 500 10 SER D 26 124.36 61.18 REMARK 500 10 MET G 35 106.69 -165.83 REMARK 500 10 SER H 26 126.24 62.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 32 GLY A 33 3 149.65 REMARK 500 GLY H 33 LEU H 34 4 149.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 HIS B 14 0.07 SIDE CHAIN REMARK 500 1 PHE D 20 0.08 SIDE CHAIN REMARK 500 1 PHE F 20 0.09 SIDE CHAIN REMARK 500 1 HIS G 14 0.09 SIDE CHAIN REMARK 500 1 PHE G 19 0.06 SIDE CHAIN REMARK 500 1 PHE H 20 0.11 SIDE CHAIN REMARK 500 2 PHE B 20 0.12 SIDE CHAIN REMARK 500 2 PHE C 20 0.08 SIDE CHAIN REMARK 500 2 PHE E 20 0.08 SIDE CHAIN REMARK 500 2 PHE F 19 0.06 SIDE CHAIN REMARK 500 2 PHE H 20 0.10 SIDE CHAIN REMARK 500 3 PHE A 20 0.12 SIDE CHAIN REMARK 500 3 PHE C 20 0.12 SIDE CHAIN REMARK 500 3 PHE E 20 0.10 SIDE CHAIN REMARK 500 3 HIS F 13 0.07 SIDE CHAIN REMARK 500 3 PHE H 20 0.11 SIDE CHAIN REMARK 500 4 PHE A 19 0.09 SIDE CHAIN REMARK 500 4 PHE B 20 0.15 SIDE CHAIN REMARK 500 4 PHE C 20 0.13 SIDE CHAIN REMARK 500 4 PHE F 20 0.11 SIDE CHAIN REMARK 500 4 PHE H 20 0.09 SIDE CHAIN REMARK 500 5 HIS A 14 0.11 SIDE CHAIN REMARK 500 5 PHE D 20 0.07 SIDE CHAIN REMARK 500 5 PHE E 20 0.09 SIDE CHAIN REMARK 500 5 PHE G 20 0.07 SIDE CHAIN REMARK 500 5 PHE H 20 0.07 SIDE CHAIN REMARK 500 6 PHE A 19 0.08 SIDE CHAIN REMARK 500 6 PHE B 20 0.12 SIDE CHAIN REMARK 500 6 PHE C 20 0.12 SIDE CHAIN REMARK 500 6 PHE D 20 0.10 SIDE CHAIN REMARK 500 6 PHE E 20 0.13 SIDE CHAIN REMARK 500 6 PHE F 20 0.11 SIDE CHAIN REMARK 500 6 PHE G 19 0.08 SIDE CHAIN REMARK 500 6 PHE G 20 0.09 SIDE CHAIN REMARK 500 7 PHE B 20 0.10 SIDE CHAIN REMARK 500 7 PHE D 20 0.17 SIDE CHAIN REMARK 500 7 PHE E 20 0.09 SIDE CHAIN REMARK 500 7 PHE F 20 0.12 SIDE CHAIN REMARK 500 7 PHE G 20 0.08 SIDE CHAIN REMARK 500 8 HIS B 13 0.13 SIDE CHAIN REMARK 500 8 PHE B 20 0.12 SIDE CHAIN REMARK 500 8 PHE C 20 0.08 SIDE CHAIN REMARK 500 8 PHE F 20 0.13 SIDE CHAIN REMARK 500 8 PHE H 20 0.19 SIDE CHAIN REMARK 500 9 PHE B 20 0.11 SIDE CHAIN REMARK 500 9 PHE C 19 0.08 SIDE CHAIN REMARK 500 9 PHE D 20 0.12 SIDE CHAIN REMARK 500 9 PHE F 20 0.17 SIDE CHAIN REMARK 500 9 HIS H 13 0.09 SIDE CHAIN REMARK 500 9 PHE H 20 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 58 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 2 MET A 35 -11.20 REMARK 500 2 VAL A 39 -10.03 REMARK 500 2 MET C 35 -11.85 REMARK 500 2 MET D 35 -18.28 REMARK 500 2 MET F 35 -11.22 REMARK 500 2 MET G 35 -15.65 REMARK 500 2 LYS H 16 -10.56 REMARK 500 3 MET C 35 -11.39 REMARK 500 3 MET D 35 -11.84 REMARK 500 3 MET G 35 -11.51 REMARK 500 4 MET A 35 -11.49 REMARK 500 4 MET D 35 -17.51 REMARK 500 4 MET F 35 -10.54 REMARK 500 4 MET G 35 -16.98 REMARK 500 5 MET B 35 -10.08 REMARK 500 5 MET C 35 -10.01 REMARK 500 5 MET D 35 -10.37 REMARK 500 5 MET F 35 -14.82 REMARK 500 6 MET B 35 -12.40 REMARK 500 6 MET D 35 -10.27 REMARK 500 6 MET F 35 -14.16 REMARK 500 6 MET G 35 -11.87 REMARK 500 7 MET A 35 -12.46 REMARK 500 7 ALA B 30 11.70 REMARK 500 7 MET B 35 -13.63 REMARK 500 7 MET F 35 -11.80 REMARK 500 8 MET B 35 -13.30 REMARK 500 9 MET D 35 -12.08 REMARK 500 9 MET F 35 -16.76 REMARK 500 9 MET G 35 -11.57 REMARK 500 10 ASP A 23 -10.20 REMARK 500 10 MET A 35 -12.29 REMARK 500 10 HIS B 14 -10.09 REMARK 500 10 MET C 35 -11.56 REMARK 500 10 ALA D 30 -10.89 REMARK 500 10 MET D 35 -12.94 REMARK 500 10 MET F 35 -10.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36495 RELATED DB: BMRB REMARK 900 AMYLOID-BETA ASSEMBLAGE ON GM1-CONTAINING MEMBRANES DBREF 7Y8Q A 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q B 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q C 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q D 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q E 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q F 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q G 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 7Y8Q H 1 40 UNP P05067 A4_HUMAN 672 711 SEQRES 1 A 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 A 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 A 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 A 40 VAL SEQRES 1 B 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 B 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 B 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 B 40 VAL SEQRES 1 C 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 C 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 C 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 C 40 VAL SEQRES 1 D 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 D 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 D 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 D 40 VAL SEQRES 1 E 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 E 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 E 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 E 40 VAL SEQRES 1 F 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 F 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 F 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 F 40 VAL SEQRES 1 G 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 G 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 G 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 G 40 VAL SEQRES 1 H 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 H 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SER SEQRES 3 H 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 H 40 VAL SHEET 1 AA1 2 ILE A 31 MET A 35 0 SHEET 2 AA1 2 ILE B 31 MET B 35 -1 O ILE B 31 N MET A 35 SHEET 1 AA2 2 ILE C 31 MET C 35 0 SHEET 2 AA2 2 ILE D 31 MET D 35 -1 O MET D 35 N ILE C 31 SHEET 1 AA3 2 LYS D 16 PHE D 19 0 SHEET 2 AA3 2 LEU E 17 PHE E 20 -1 O PHE E 20 N LYS D 16 SHEET 1 AA4 2 ILE E 31 GLY E 33 0 SHEET 2 AA4 2 GLY F 33 MET F 35 -1 O MET F 35 N ILE E 31 SHEET 1 AA5 2 LYS F 16 PHE F 20 0 SHEET 2 AA5 2 LYS G 16 PHE G 20 -1 O VAL G 18 N VAL F 18 SHEET 1 AA6 2 ILE G 31 MET G 35 0 SHEET 2 AA6 2 ILE H 31 MET H 35 -1 O MET H 35 N ILE G 31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1