HEADER HYDROLASE 24-JUN-22 7Y9I TITLE COMPLEX STRUCTURE OF ATYCHF1 WITH PPGPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OBG-LIKE ATPASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RIBOSOME-BINDING ATPASE YCHF,ATYCHF1; COMPND 5 EC: 3.6.5.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: YCHF1, AT1G30580, T5I8.3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATYCHF1, GTP-BINDING PROTEIN, PPGPP, YCHF-TYPE, P-LOOP NTPASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,Z.CHEN REVDAT 2 29-NOV-23 7Y9I 1 REMARK REVDAT 1 12-JUL-23 7Y9I 0 JRNL AUTH M.Y.CHEUNG,X.LI,Y.S.KU,Z.CHEN,H.M.LAM JRNL TITL CO-CRYSTALIZATION REVEALS THE INTERACTION BETWEEN ATYCHF1 JRNL TITL 2 AND PPGPP. JRNL REF FRONT MOL BIOSCI V. 9 61350 2022 JRNL REFN ESSN 2296-889X JRNL PMID 36533075 JRNL DOI 10.3389/FMOLB.2022.1061350 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.-Y.CHEUNG,X.LI,R.MIAO,Y.-H.FONG,K.-P.LI,Y.-L.YUNG,M.-H.YU, REMARK 1 AUTH 2 K.-B.WONG,Z.CHEN,M.-H.LAM REMARK 1 TITL ATP BINDING BY THE P-LOOP NTPASE OSYCHF1 (AN UNCONVENTIONAL REMARK 1 TITL 2 G PROTEIN) CONTRIBUTES TO BIOTIC BUT NOT ABIOTIC STRESS REMARK 1 TITL 3 RESPONSES REMARK 1 REF PROC.NATL.ACAD.SCI.USA 2016 REMARK 1 REFN ESSN 1091-6490 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.154 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.63000 REMARK 3 B22 (A**2) : -0.06600 REMARK 3 B33 (A**2) : 2.69600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2885 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2701 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3925 ; 1.425 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6182 ; 1.253 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 6.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;31.320 ;22.029 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 463 ;13.223 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3239 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 667 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 522 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 60 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1418 ; 0.158 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1446 ; 3.080 ; 5.149 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1445 ; 3.080 ; 5.146 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1804 ; 4.339 ; 7.713 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1805 ; 4.338 ; 7.715 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1439 ; 3.675 ; 5.487 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1438 ; 3.673 ; 5.487 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2121 ; 5.618 ; 8.081 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2122 ; 5.618 ; 8.082 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7Y9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-22. REMARK 100 THE DEPOSITION ID IS D_1300030518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5EE0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 8.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.23000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 99 REMARK 465 ARG A 100 REMARK 465 GLY A 101 REMARK 465 ALA A 102 REMARK 465 HIS A 103 REMARK 465 GLU A 104 REMARK 465 GLY A 105 REMARK 465 GLN A 106 REMARK 465 GLY A 107 REMARK 465 LEU A 108 REMARK 465 GLY A 109 REMARK 465 ASN A 110 REMARK 465 ASN A 111 REMARK 465 GLY A 390 REMARK 465 GLY A 391 REMARK 465 GLY A 392 REMARK 465 LYS A 393 REMARK 465 LYS A 394 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLN A 78 CD OE1 NE2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 LEU A 98 CG CD1 CD2 REMARK 470 PHE A 112 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 115 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 GLU A 148 OE1 OE2 REMARK 470 LYS A 157 CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 164 CD CE NZ REMARK 470 LYS A 165 CE NZ REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 ASN A 177 CG OD1 ND2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLN A 180 CD OE1 NE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 GLU A 184 CD OE1 OE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 LYS A 190 CE NZ REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 ILE A 229 CD1 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 283 CG CD OE1 OE2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 LYS A 286 CE NZ REMARK 470 ASP A 313 OD1 OD2 REMARK 470 LYS A 325 CE NZ REMARK 470 ARG A 339 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 353 CE NZ REMARK 470 LYS A 372 CD CE NZ REMARK 470 LYS A 385 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 -80.93 -112.87 REMARK 500 PHE A 54 68.63 -118.00 REMARK 500 ASN A 62 32.06 -97.20 REMARK 500 ALA A 132 -88.88 -116.25 REMARK 500 ASP A 142 87.30 -153.68 REMARK 500 LYS A 239 44.95 70.40 REMARK 500 ILE A 302 79.63 -114.50 REMARK 500 HIS A 334 143.94 -172.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 38 OG REMARK 620 2 G4P A 401 O3B 91.5 REMARK 620 N 1 DBREF 7Y9I A 1 394 UNP Q9SA73 OLA1_ARATH 1 394 SEQRES 1 A 394 MET PRO PRO LYS ALA LYS ALA LYS ASP ALA GLY PRO VAL SEQRES 2 A 394 GLU ARG PRO ILE LEU GLY ARG PHE SER SER HIS LEU LYS SEQRES 3 A 394 ILE GLY ILE VAL GLY LEU PRO ASN VAL GLY LYS SER THR SEQRES 4 A 394 LEU PHE ASN THR LEU THR LYS LEU SER ILE PRO ALA GLU SEQRES 5 A 394 ASN PHE PRO PHE CYS THR ILE GLU PRO ASN GLU ALA ARG SEQRES 6 A 394 VAL ASN ILE PRO ASP GLU ARG PHE ASP TRP LEU CYS GLN SEQRES 7 A 394 THR TYR LYS PRO LYS SER GLU ILE PRO ALA PHE LEU GLU SEQRES 8 A 394 ILE HIS ASP ILE ALA GLY LEU VAL ARG GLY ALA HIS GLU SEQRES 9 A 394 GLY GLN GLY LEU GLY ASN ASN PHE LEU SER HIS ILE ARG SEQRES 10 A 394 ALA VAL ASP GLY ILE PHE HIS VAL LEU ARG ALA PHE GLU SEQRES 11 A 394 ASP ALA ASP ILE ILE HIS VAL ASP ASP ILE VAL ASP PRO SEQRES 12 A 394 VAL ARG ASP LEU GLU THR ILE THR GLU GLU LEU ARG LEU SEQRES 13 A 394 LYS ASP ILE GLU PHE VAL GLY LYS LYS ILE ASP ASP VAL SEQRES 14 A 394 GLU LYS SER MET LYS ARG SER ASN ASP LYS GLN LEU LYS SEQRES 15 A 394 ILE GLU LEU GLU LEU LEU GLN LYS VAL LYS ALA TRP LEU SEQRES 16 A 394 GLU ASP GLY LYS ASP VAL ARG PHE GLY ASP TRP LYS THR SEQRES 17 A 394 ALA ASP ILE GLU ILE LEU ASN THR PHE GLN LEU LEU SER SEQRES 18 A 394 ALA LYS PRO VAL VAL TYR LEU ILE ASN LEU ASN GLU ARG SEQRES 19 A 394 ASP TYR GLN ARG LYS LYS ASN LYS PHE LEU PRO LYS ILE SEQRES 20 A 394 HIS ALA TRP VAL GLN GLU HIS GLY GLY ASP THR MET ILE SEQRES 21 A 394 PRO PHE SER GLY VAL PHE GLU ARG SER LEU ALA ASP MET SEQRES 22 A 394 ALA PRO ASP GLU ALA ALA LYS TYR CYS GLU GLU ASN LYS SEQRES 23 A 394 LEU GLN SER ALA LEU PRO ARG ILE ILE LYS THR GLY PHE SEQRES 24 A 394 SER ALA ILE ASN LEU ILE TYR PHE PHE THR ALA GLY PRO SEQRES 25 A 394 ASP GLU VAL LYS CYS TRP GLN ILE ARG ARG GLN SER LYS SEQRES 26 A 394 ALA PRO GLN ALA ALA GLY ALA ILE HIS THR ASP PHE GLU SEQRES 27 A 394 ARG GLY PHE ILE CYS ALA GLU VAL MET LYS PHE GLU ASP SEQRES 28 A 394 LEU LYS GLU LEU GLY ASN GLU PRO ALA VAL LYS ALA ALA SEQRES 29 A 394 GLY LYS TYR ARG GLN GLU GLY LYS THR TYR VAL VAL GLN SEQRES 30 A 394 ASP GLY ASP ILE ILE PHE PHE LYS PHE ASN VAL SER GLY SEQRES 31 A 394 GLY GLY LYS LYS HET G4P A 401 36 HET MG A 402 1 HETNAM G4P GUANOSINE-5',3'-TETRAPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN G4P GUANOSINE TETRAPHOSPHATE;PPGPP FORMUL 2 G4P C10 H17 N5 O17 P4 FORMUL 3 MG MG 2+ FORMUL 4 HOH *61(H2 O) HELIX 1 AA1 GLY A 36 LEU A 47 1 12 HELIX 2 AA2 PRO A 50 PHE A 54 5 5 HELIX 3 AA3 ASP A 70 LYS A 81 1 12 HELIX 4 AA4 LEU A 113 VAL A 119 1 7 HELIX 5 AA5 ASP A 142 SER A 176 1 35 HELIX 6 AA6 ASP A 178 ASP A 197 1 20 HELIX 7 AA7 ASP A 200 GLY A 204 5 5 HELIX 8 AA8 LYS A 207 GLN A 218 1 12 HELIX 9 AA9 LEU A 219 LYS A 223 5 5 HELIX 10 AB1 ASN A 232 LYS A 239 1 8 HELIX 11 AB2 PHE A 243 HIS A 254 1 12 HELIX 12 AB3 SER A 263 MET A 273 1 11 HELIX 13 AB4 ALA A 274 LYS A 286 1 13 HELIX 14 AB5 ALA A 290 GLY A 298 1 9 HELIX 15 AB6 LYS A 325 HIS A 334 1 10 HELIX 16 AB7 HIS A 334 GLY A 340 1 7 HELIX 17 AB8 LYS A 348 GLY A 356 1 9 HELIX 18 AB9 ASN A 357 ALA A 364 1 8 SHEET 1 AA1 6 GLU A 63 ASN A 67 0 SHEET 2 AA1 6 PHE A 89 ASP A 94 -1 O ILE A 92 N ALA A 64 SHEET 3 AA1 6 LYS A 26 VAL A 30 1 N ILE A 27 O GLU A 91 SHEET 4 AA1 6 GLY A 121 ARG A 127 1 O PHE A 123 N VAL A 30 SHEET 5 AA1 6 VAL A 225 ASN A 230 1 O ASN A 230 N LEU A 126 SHEET 6 AA1 6 MET A 259 PHE A 262 1 O PHE A 262 N ILE A 229 SHEET 1 AA2 3 SER A 84 ILE A 86 0 SHEET 2 AA2 3 GLU A 314 ARG A 321 1 O VAL A 315 N ILE A 86 SHEET 3 AA2 3 LEU A 304 ALA A 310 -1 N PHE A 307 O TRP A 318 SHEET 1 AA3 3 ARG A 368 GLU A 370 0 SHEET 2 AA3 3 PHE A 341 MET A 347 -1 N ALA A 344 O GLU A 370 SHEET 3 AA3 3 ILE A 381 PHE A 386 -1 O ILE A 381 N MET A 347 LINK OG SER A 38 MG MG A 402 1555 1555 2.11 LINK O3B G4P A 401 MG MG A 402 1555 1555 2.17 CRYST1 72.460 111.500 52.330 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013801 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019109 0.00000