HEADER BIOSYNTHETIC PROTEIN 28-JUN-22 7YB3 TITLE SUFS WITH D-CYSTEINE FOR 1 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE SUFS; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ZAI IS USED FOR A LYS-PLP-D-CYSTEINE ADDUCT AS AN COMPND 7 REACTION INTERMEDIATE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUFS, CSD, YURW, BSU32690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CYSTEINE DESULFURASE, IRON-SULFUR CLUSTER BIOSYNTHESIS, PLP-DEPENDENT KEYWDS 2 ENZYME, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAMURA,T.FUJISHIRO REVDAT 2 29-NOV-23 7YB3 1 REMARK REVDAT 1 05-JUL-23 7YB3 0 JRNL AUTH R.NAKAMURA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL SNAPSHOTS OF THIAZOLIDINE FOMRATION OF PLP-DEPENDENT ENZYME JRNL TITL 2 SUFS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3013 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 293 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3280 ; 0.020 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4433 ; 2.354 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.318 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;34.570 ;23.540 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;14.269 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.444 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 435 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2449 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -26.6890 12.9360 -14.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.1276 REMARK 3 T33: 0.1033 T12: -0.0831 REMARK 3 T13: 0.0298 T23: -0.0498 REMARK 3 L TENSOR REMARK 3 L11: 0.1201 L22: 1.4820 REMARK 3 L33: 0.9635 L12: 0.3249 REMARK 3 L13: 0.0677 L23: 0.4821 REMARK 3 S TENSOR REMARK 3 S11: 0.0560 S12: -0.0492 S13: -0.0008 REMARK 3 S21: -0.0219 S22: 0.0502 S23: -0.1607 REMARK 3 S31: -0.1246 S32: 0.2460 S33: -0.1062 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 109 REMARK 3 ORIGIN FOR THE GROUP (A): -45.0640 -5.8950 -11.9000 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.1081 REMARK 3 T33: 0.1201 T12: -0.0106 REMARK 3 T13: 0.0122 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 0.2170 L22: 0.6045 REMARK 3 L33: 0.5755 L12: 0.0119 REMARK 3 L13: 0.0781 L23: 0.5220 REMARK 3 S TENSOR REMARK 3 S11: 0.1453 S12: 0.0324 S13: -0.0338 REMARK 3 S21: 0.1204 S22: -0.1418 S23: 0.1000 REMARK 3 S31: 0.1341 S32: -0.0395 S33: -0.0035 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 110 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): -57.3380 13.6230 -5.0610 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.0800 REMARK 3 T33: 0.1542 T12: -0.0431 REMARK 3 T13: 0.0926 T23: -0.0739 REMARK 3 L TENSOR REMARK 3 L11: 0.3048 L22: 1.2788 REMARK 3 L33: 0.3034 L12: 0.2296 REMARK 3 L13: 0.1006 L23: 0.3204 REMARK 3 S TENSOR REMARK 3 S11: 0.0862 S12: -0.0345 S13: 0.0899 REMARK 3 S21: 0.2272 S22: -0.1749 S23: 0.2771 REMARK 3 S31: -0.0755 S32: -0.0241 S33: 0.0887 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): -44.8440 13.0340 -14.5980 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.1104 REMARK 3 T33: 0.1618 T12: -0.0029 REMARK 3 T13: 0.0390 T23: -0.0809 REMARK 3 L TENSOR REMARK 3 L11: 2.3991 L22: 1.9134 REMARK 3 L33: 3.8800 L12: 1.7373 REMARK 3 L13: -2.5113 L23: -2.7241 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.2390 S13: 0.0734 REMARK 3 S21: -0.0016 S22: 0.0078 S23: 0.0394 REMARK 3 S31: 0.0007 S32: 0.0030 S33: -0.0584 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): -48.0700 -5.1130 -11.7350 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.0566 REMARK 3 T33: 0.0955 T12: -0.0420 REMARK 3 T13: 0.0281 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 0.3636 L22: 0.5826 REMARK 3 L33: 0.3808 L12: 0.2168 REMARK 3 L13: 0.0879 L23: 0.2460 REMARK 3 S TENSOR REMARK 3 S11: 0.0729 S12: -0.0073 S13: -0.0305 REMARK 3 S21: 0.1670 S22: -0.0650 S23: 0.0855 REMARK 3 S31: 0.0830 S32: 0.0149 S33: -0.0079 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3160 28.9730 -12.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.2562 T22: 0.0275 REMARK 3 T33: 0.1013 T12: -0.0350 REMARK 3 T13: 0.0144 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 1.2609 L22: 1.1166 REMARK 3 L33: 0.5855 L12: 0.3306 REMARK 3 L13: -0.1084 L23: 0.7107 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0353 S13: 0.1297 REMARK 3 S21: -0.1822 S22: -0.0273 S23: 0.1404 REMARK 3 S31: -0.2276 S32: 0.0105 S33: 0.0440 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 379 A 405 REMARK 3 ORIGIN FOR THE GROUP (A): -31.1480 31.5240 -14.3100 REMARK 3 T TENSOR REMARK 3 T11: 0.2251 T22: 0.0940 REMARK 3 T33: 0.1077 T12: -0.1079 REMARK 3 T13: 0.0420 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 0.9744 L22: 4.3688 REMARK 3 L33: 1.5118 L12: -0.1279 REMARK 3 L13: 0.5052 L23: -1.3047 REMARK 3 S TENSOR REMARK 3 S11: -0.1407 S12: -0.0549 S13: 0.1117 REMARK 3 S21: -0.0318 S22: 0.1640 S23: -0.1332 REMARK 3 S31: -0.3172 S32: 0.1726 S33: -0.0233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7YB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.18 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.49 REMARK 200 R MERGE FOR SHELL (I) : 0.94100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZS9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 50 MM LITHIUM SULFATE, REMARK 280 50% (V/V) PEG200, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.03333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.06667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.06667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.03333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.03333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 PHE A 406 REMARK 465 VAL A 407 REMARK 465 ASP A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 183 CD GLU A 183 OE1 0.125 REMARK 500 GLU A 266 CD GLU A 266 OE1 0.069 REMARK 500 GLU A 272 CD GLU A 272 OE1 0.091 REMARK 500 GLU A 327 CD GLU A 327 OE1 0.169 REMARK 500 GLU A 327 CD GLU A 327 OE2 0.079 REMARK 500 GLU A 385 CD GLU A 385 OE1 0.067 REMARK 500 GLU A 393 CD GLU A 393 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 313 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 70.72 -102.72 REMARK 500 GLN A 47 -33.51 -130.56 REMARK 500 TYR A 48 17.73 -144.31 REMARK 500 HIS A 53 161.18 78.17 REMARK 500 TYR A 103 -61.79 -99.51 REMARK 500 ILE A 116 -164.25 -126.60 REMARK 500 ILE A 125 -55.44 -125.17 REMARK 500 GLU A 252 -27.16 78.36 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YB3 A 1 406 UNP O32164 SUFS_BACSU 1 406 SEQADV 7YB3 MET A -2 UNP O32164 INITIATING METHIONINE SEQADV 7YB3 GLY A -1 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 0 UNP O32164 EXPRESSION TAG SEQADV 7YB3 VAL A 407 UNP O32164 EXPRESSION TAG SEQADV 7YB3 ASP A 408 UNP O32164 EXPRESSION TAG SEQADV 7YB3 LEU A 409 UNP O32164 EXPRESSION TAG SEQADV 7YB3 GLU A 410 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 411 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 412 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 413 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 414 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 415 UNP O32164 EXPRESSION TAG SEQADV 7YB3 HIS A 416 UNP O32164 EXPRESSION TAG SEQRES 1 A 419 MET GLY HIS MET ASN ILE THR ASP ILE ARG GLU GLN PHE SEQRES 2 A 419 PRO ILE LEU HIS GLN GLN VAL ASN GLY HIS ASP LEU VAL SEQRES 3 A 419 TYR LEU ASP SER ALA ALA THR SER GLN LYS PRO ARG ALA SEQRES 4 A 419 VAL ILE GLU THR LEU ASP LYS TYR TYR ASN GLN TYR ASN SEQRES 5 A 419 SER ASN VAL HIS ARG GLY VAL HIS THR LEU GLY THR ARG SEQRES 6 A 419 ALA THR ASP GLY TYR GLU GLY ALA ARG GLU LYS VAL ARG SEQRES 7 A 419 LYS PHE ILE ASN ALA LYS SER MET ALA GLU ILE ILE PHE SEQRES 8 A 419 THR LYS GLY THR THR THR SER LEU ASN MET VAL ALA LEU SEQRES 9 A 419 SER TYR ALA ARG ALA ASN LEU LYS PRO GLY ASP GLU VAL SEQRES 10 A 419 VAL ILE THR TYR MET GLU HIS HIS ALA ASN ILE ILE PRO SEQRES 11 A 419 TRP GLN GLN ALA VAL LYS ALA THR GLY ALA THR LEU LYS SEQRES 12 A 419 TYR ILE PRO LEU GLN GLU ASP GLY THR ILE SER LEU GLU SEQRES 13 A 419 ASP VAL ARG GLU THR VAL THR SER ASN THR LYS ILE VAL SEQRES 14 A 419 ALA VAL SER HIS VAL SER ASN VAL LEU GLY THR VAL ASN SEQRES 15 A 419 PRO ILE LYS GLU MET ALA LYS ILE ALA HIS ASP ASN GLY SEQRES 16 A 419 ALA VAL ILE VAL VAL ASP GLY ALA GLN SER THR PRO HIS SEQRES 17 A 419 MET LYS ILE ASP VAL GLN ASP LEU ASP CYS ASP PHE PHE SEQRES 18 A 419 ALA LEU SER SER HIS ZAI MET CYS GLY PRO THR GLY VAL SEQRES 19 A 419 GLY VAL LEU TYR GLY LYS LYS ALA LEU LEU GLU ASN MET SEQRES 20 A 419 GLU PRO ALA GLU PHE GLY GLY GLU MET ILE ASP PHE VAL SEQRES 21 A 419 GLY LEU TYR GLU SER THR TRP LYS GLU LEU PRO TRP LYS SEQRES 22 A 419 PHE GLU ALA GLY THR PRO ILE ILE ALA GLY ALA ILE GLY SEQRES 23 A 419 LEU GLY ALA ALA ILE ASP PHE LEU GLU GLU ILE GLY LEU SEQRES 24 A 419 ASP GLU ILE SER ARG HIS GLU HIS LYS LEU ALA ALA TYR SEQRES 25 A 419 ALA LEU GLU ARG PHE ARG GLN LEU ASP GLY VAL THR VAL SEQRES 26 A 419 TYR GLY PRO GLU GLU ARG ALA GLY LEU VAL THR PHE ASN SEQRES 27 A 419 LEU ASP ASP VAL HIS PRO HIS ASP VAL ALA THR VAL LEU SEQRES 28 A 419 ASP ALA GLU GLY ILE ALA VAL ARG ALA GLY HIS HIS CYS SEQRES 29 A 419 ALA GLN PRO LEU MET LYS TRP LEU ASP VAL THR ALA THR SEQRES 30 A 419 ALA ARG ALA SER PHE TYR LEU TYR ASN THR GLU GLU GLU SEQRES 31 A 419 ILE ASP LYS LEU VAL GLU ALA LEU GLN LYS THR LYS GLU SEQRES 32 A 419 TYR PHE THR ASN VAL PHE VAL ASP LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS MODRES 7YB3 ZAI A 224 LYS MODIFIED RESIDUE HET ZAI A 224 31 HET PEG A 501 7 HET PEG A 502 7 HET PGE A 503 10 HET PEG A 504 7 HET PGE A 505 10 HET PEG A 506 7 HETNAM ZAI (2~{S})-2-AZANYL-6-[[(~{R})-[2-METHYL-3-OXIDANYL-5- HETNAM 2 ZAI (PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]-[[(2~{S})-1- HETNAM 3 ZAI OXIDANYL-1-OXIDANYLIDENE-3-SULFANYL-PROPAN-2- HETNAM 4 ZAI YL]AMINO]METHYL]AMINO]HEXANOIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 ZAI C17 H29 N4 O9 P S FORMUL 2 PEG 4(C4 H10 O3) FORMUL 4 PGE 2(C6 H14 O4) FORMUL 8 HOH *293(H2 O) HELIX 1 AA1 ASN A 2 GLU A 8 1 7 HELIX 2 AA2 GLN A 9 HIS A 14 5 6 HELIX 3 AA3 PRO A 34 TYR A 48 1 15 HELIX 4 AA4 HIS A 57 ASN A 79 1 23 HELIX 5 AA5 SER A 82 ALA A 84 5 3 HELIX 6 AA6 GLY A 91 TYR A 103 1 13 HELIX 7 AA7 ALA A 104 ASN A 107 5 4 HELIX 8 AA8 HIS A 121 ASN A 124 5 4 HELIX 9 AA9 ILE A 125 GLY A 136 1 12 HELIX 10 AB1 SER A 151 VAL A 159 1 9 HELIX 11 AB2 PRO A 180 ASN A 191 1 12 HELIX 12 AB3 ASP A 209 ASP A 214 1 6 HELIX 13 AB4 HIS A 223 MET A 225 5 3 HELIX 14 AB5 LYS A 237 MET A 244 1 8 HELIX 15 AB6 PRO A 268 GLU A 272 5 5 HELIX 16 AB7 ILE A 277 GLY A 295 1 19 HELIX 17 AB8 GLY A 295 ARG A 315 1 21 HELIX 18 AB9 HIS A 340 GLU A 351 1 12 HELIX 19 AC1 ALA A 362 LEU A 369 1 8 HELIX 20 AC2 THR A 384 VAL A 405 1 22 SHEET 1 AA1 2 GLN A 16 VAL A 17 0 SHEET 2 AA1 2 HIS A 20 ASP A 21 -1 O HIS A 20 N VAL A 17 SHEET 1 AA2 2 VAL A 23 TYR A 24 0 SHEET 2 AA2 2 ILE A 353 ALA A 354 1 O ALA A 354 N VAL A 23 SHEET 1 AA3 7 ILE A 86 THR A 89 0 SHEET 2 AA3 7 GLY A 232 GLY A 236 -1 O GLY A 232 N THR A 89 SHEET 3 AA3 7 PHE A 217 SER A 221 -1 N PHE A 218 O TYR A 235 SHEET 4 AA3 7 VAL A 194 ASP A 198 1 N VAL A 197 O PHE A 217 SHEET 5 AA3 7 THR A 163 SER A 169 1 N VAL A 166 O VAL A 196 SHEET 6 AA3 7 GLU A 113 THR A 117 1 N VAL A 115 O ILE A 165 SHEET 7 AA3 7 THR A 138 ILE A 142 1 O ILE A 142 N ILE A 116 SHEET 1 AA4 2 ILE A 254 VAL A 257 0 SHEET 2 AA4 2 SER A 262 TRP A 264 -1 O THR A 263 N ASP A 255 SHEET 1 AA5 4 VAL A 320 TYR A 323 0 SHEET 2 AA5 4 LEU A 331 LEU A 336 -1 O ASN A 335 N THR A 321 SHEET 3 AA5 4 THR A 374 SER A 378 -1 O ALA A 375 N PHE A 334 SHEET 4 AA5 4 ARG A 356 GLY A 358 -1 N ARG A 356 O ARG A 376 LINK C HIS A 223 N ZAI A 224 1555 1555 1.34 LINK C ZAI A 224 N MET A 225 1555 1555 1.42 CISPEP 1 LEU A 267 PRO A 268 0 0.85 CRYST1 92.900 92.900 129.100 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010764 0.006215 0.000000 0.00000 SCALE2 0.000000 0.012429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007746 0.00000