HEADER OXIDOREDUCTASE 29-JUN-22 7YB9 TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) OXYGENASE AND TPR DOMAINS TITLE 2 IN COMPLEX WITH L-2-HYDROXYGLUTARATE AND FACTOR X-DERIVED PEPTIDE TITLE 3 (39MER-4SER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COAGULATION FACTOR X; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR; COMPND 12 EC: 3.4.21.6; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 GENE: F10; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 06-NOV-24 7YB9 1 REMARK REVDAT 2 29-NOV-23 7YB9 1 REMARK REVDAT 1 05-JUL-23 7YB9 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD JRNL TITL ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) OXYGENASE AND JRNL TITL 2 TPR DOMAINS IN COMPLEX WITH L-2-HYDROXYGLUTARATE AND FACTOR JRNL TITL 3 X-DERIVED PEPTIDE (39MER-4SER) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 3 NUMBER OF REFLECTIONS : 75697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.6300 - 3.6300 1.00 6630 162 0.1499 0.1719 REMARK 3 2 3.6300 - 2.8800 1.00 6354 158 0.1735 0.2314 REMARK 3 3 2.8800 - 2.5200 1.00 6312 154 0.1909 0.1924 REMARK 3 4 2.5200 - 2.2900 1.00 6274 154 0.1850 0.2299 REMARK 3 5 2.2900 - 2.1200 1.00 6249 154 0.1892 0.2321 REMARK 3 6 2.1200 - 2.0000 1.00 6217 152 0.1934 0.2124 REMARK 3 7 2.0000 - 1.9000 0.99 6177 153 0.2200 0.2641 REMARK 3 8 1.9000 - 1.8100 0.99 6202 151 0.2593 0.2667 REMARK 3 9 1.8100 - 1.7400 0.99 6153 152 0.2829 0.3357 REMARK 3 10 1.7400 - 1.6800 0.99 6136 151 0.3171 0.3319 REMARK 3 11 1.6800 - 1.6300 0.98 6106 149 0.3601 0.3510 REMARK 3 12 1.6300 - 1.5900 0.73 4509 103 0.4012 0.3972 REMARK 3 13 1.5900 - 1.5400 0.09 572 13 0.4482 0.3054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.214 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.722 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3711 REMARK 3 ANGLE : 1.131 5025 REMARK 3 CHIRALITY : 0.057 528 REMARK 3 PLANARITY : 0.008 658 REMARK 3 DIHEDRAL : 19.296 1396 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 329 THROUGH 467 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4426 39.3529 56.9332 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.2541 REMARK 3 T33: 0.3749 T12: 0.0205 REMARK 3 T13: -0.0024 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.8402 L22: 0.8153 REMARK 3 L33: 0.8768 L12: -0.2475 REMARK 3 L13: -0.1130 L23: 0.8490 REMARK 3 S TENSOR REMARK 3 S11: 0.2667 S12: 0.0786 S13: -0.0870 REMARK 3 S21: -0.0506 S22: -0.2168 S23: 0.1745 REMARK 3 S31: -0.1049 S32: -0.1130 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 468 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.7506 19.3155 21.4608 REMARK 3 T TENSOR REMARK 3 T11: 0.2469 T22: 0.2420 REMARK 3 T33: 0.2683 T12: -0.0286 REMARK 3 T13: -0.0105 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.6292 L22: 0.3863 REMARK 3 L33: 3.0926 L12: -0.2620 REMARK 3 L13: 1.7809 L23: 0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.2612 S13: -0.1083 REMARK 3 S21: 0.0638 S22: 0.1322 S23: -0.0569 REMARK 3 S31: 0.2886 S32: -0.4152 S33: 0.0061 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.5547 25.1390 27.3178 REMARK 3 T TENSOR REMARK 3 T11: 0.3188 T22: 0.3747 REMARK 3 T33: 0.3372 T12: 0.0176 REMARK 3 T13: -0.0529 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: -0.0051 L22: 0.0014 REMARK 3 L33: 0.0142 L12: -0.0017 REMARK 3 L13: 0.0050 L23: 0.0129 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: 0.0785 S13: -0.0221 REMARK 3 S21: -0.1089 S22: 0.0804 S23: -0.0741 REMARK 3 S31: 0.0807 S32: 0.0881 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.2526 29.6567 33.6862 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.5584 REMARK 3 T33: 0.2949 T12: 0.1163 REMARK 3 T13: -0.0374 T23: -0.0971 REMARK 3 L TENSOR REMARK 3 L11: 0.0194 L22: 0.0618 REMARK 3 L33: 0.0139 L12: -0.0241 REMARK 3 L13: -0.0179 L23: 0.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0734 S12: -0.0234 S13: 0.1529 REMARK 3 S21: 0.0655 S22: -0.0218 S23: -0.0814 REMARK 3 S31: 0.0079 S32: -0.0912 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5875 35.2099 42.5429 REMARK 3 T TENSOR REMARK 3 T11: 0.7381 T22: 0.7354 REMARK 3 T33: 0.6448 T12: 0.0957 REMARK 3 T13: 0.0725 T23: -0.2654 REMARK 3 L TENSOR REMARK 3 L11: 0.0183 L22: 0.0048 REMARK 3 L33: 0.1790 L12: 0.0091 REMARK 3 L13: -0.0537 L23: -0.0298 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.1349 S13: 0.0896 REMARK 3 S21: -0.0536 S22: 0.0169 S23: -0.0069 REMARK 3 S31: 0.0015 S32: 0.0788 S33: -0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YB9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 91.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 3.63300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JTC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CHLORIDE, 20 % W/V REMARK 280 POLYETHYLENE GLYCOL 6,000, 0.1 M BIS-TRIS PROPANE, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.83600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.53650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.94750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.53650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.83600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.94750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 329 CD CE NZ REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 NZ REMARK 470 LYS A 353 NZ REMARK 470 LYS A 356 CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 LYS A 391 CD CE NZ REMARK 470 LYS A 541 CD CE NZ REMARK 470 GLU A 542 CG CD OE1 OE2 REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 609 CD CE NZ REMARK 470 ARG A 635 NE CZ NH1 NH2 REMARK 470 LYS A 653 CD CE NZ REMARK 470 LYS A 697 CE NZ REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 GLU B 114 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 999 O HOH A 1225 1.63 REMARK 500 O HOH A 1013 O HOH A 1214 1.76 REMARK 500 O HOH A 1140 O HOH A 1182 1.78 REMARK 500 O HOH A 1214 O HOH A 1280 1.80 REMARK 500 O HOH B 208 O HOH B 216 1.93 REMARK 500 O HOH A 1172 O HOH A 1273 1.96 REMARK 500 O HOH B 212 O HOH B 214 1.99 REMARK 500 O HOH A 1018 O HOH A 1208 2.00 REMARK 500 O HOH A 1187 O HOH A 1192 2.00 REMARK 500 O HOH A 1013 O HOH A 1280 2.01 REMARK 500 O HOH A 1127 O HOH A 1192 2.04 REMARK 500 O HOH A 1028 O HOH A 1239 2.06 REMARK 500 O HOH B 212 O HOH B 213 2.07 REMARK 500 O HOH A 1106 O HOH A 1280 2.08 REMARK 500 O HOH A 984 O HOH A 1176 2.08 REMARK 500 O HOH A 1135 O HOH A 1212 2.10 REMARK 500 O HOH B 216 O HOH B 220 2.11 REMARK 500 O HOH A 1115 O HOH A 1182 2.13 REMARK 500 O HOH A 1165 O HOH A 1225 2.14 REMARK 500 OE1 GLU A 366 NH1 ARG A 369 2.18 REMARK 500 O HOH B 215 O HOH B 217 2.18 REMARK 500 O HOH A 958 O HOH A 1216 2.19 REMARK 500 O HOH A 925 O HOH A 1211 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 592 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 583 47.51 -86.85 REMARK 500 ALA A 608 48.83 -149.31 REMARK 500 ALA A 705 -120.55 53.38 REMARK 500 ALA A 731 -166.44 -76.80 REMARK 500 LYS B 102 -68.37 -103.09 REMARK 500 GLU B 114 51.08 -144.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1286 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A1287 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1288 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 801 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 87.0 REMARK 620 3 S2G A 802 O3 88.0 111.0 REMARK 620 4 S2G A 802 O2 162.2 96.8 74.4 REMARK 620 N 1 2 3 DBREF 7YB9 A 329 758 UNP Q12797 ASPH_HUMAN 329 758 DBREF 7YB9 B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 7YB9 SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION SEQADV 7YB9 SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION SEQADV 7YB9 SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION SEQADV 7YB9 SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION SEQRES 1 A 430 LYS LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE SEQRES 2 A 430 LYS ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG SEQRES 3 A 430 GLY LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU SEQRES 4 A 430 VAL ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY SEQRES 5 A 430 LYS ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SEQRES 6 A 430 SER ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN SEQRES 7 A 430 GLU VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU SEQRES 8 A 430 LYS LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE SEQRES 9 A 430 LEU GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG SEQRES 10 A 430 LEU VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN SEQRES 11 A 430 ASP LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP SEQRES 12 A 430 ASN ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR SEQRES 13 A 430 PRO ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE SEQRES 14 A 430 LEU LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR SEQRES 15 A 430 LEU LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP SEQRES 16 A 430 ASP GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN SEQRES 17 A 430 ARG VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU SEQRES 18 A 430 GLY HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SEQRES 19 A 430 SER LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP SEQRES 20 A 430 TRP THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SEQRES 21 A 430 SER LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY SEQRES 22 A 430 LEU ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO SEQRES 23 A 430 GLU ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN SEQRES 24 A 430 PHE THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA SEQRES 25 A 430 CYS LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS SEQRES 26 A 430 PHE PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS SEQRES 27 A 430 TYR SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS SEQRES 28 A 430 THR GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY SEQRES 29 A 430 LEU VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA SEQRES 30 A 430 ASN GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE SEQRES 31 A 430 PHE ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SEQRES 32 A 430 SER SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS SEQRES 33 A 430 PRO GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA SEQRES 34 A 430 ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET MN A 801 1 HET S2G A 802 16 HETNAM MN MANGANESE (II) ION HETNAM S2G (2S)-2-HYDROXYPENTANEDIOIC ACID FORMUL 3 MN MN 2+ FORMUL 4 S2G C5 H8 O5 FORMUL 5 HOH *408(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 SER A 410 1 17 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 VAL A 538 1 15 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 ALA A 644 1 8 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N ARG A 688 O PHE A 719 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O VAL A 742 N LEU A 687 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N ARG A 688 O PHE A 719 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O VAL A 742 N LEU A 687 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N LYS A 701 O TRP A 728 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O GLU A 707 N CYS A 704 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.09 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.05 LINK NE2 HIS A 679 MN MN A 801 1555 1555 2.21 LINK NE2 HIS A 725 MN MN A 801 1555 1555 2.14 LINK MN MN A 801 O3 S2G A 802 1555 1555 2.13 LINK MN MN A 801 O2 S2G A 802 1555 1555 2.17 CRYST1 49.672 91.895 123.073 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008125 0.00000