HEADER ANTIMICROBIAL PROTEIN 03-JUL-22 7YD3 TITLE SINGLE-CHAIN VARIABLE FRAGMENT OF APP 3D1 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAVY CHAIN OF 3D1 SCFV; COMPND 3 CHAIN: H, A, C, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN OF 3D1 SCFV; COMPND 7 CHAIN: L, B, D, F; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS COMBINATORIAL ANTIBODY LIBRARY, BROAD NEUTRALIZING MAB, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.YAN,G.YANG REVDAT 2 29-NOV-23 7YD3 1 REMARK REVDAT 1 05-JUL-23 7YD3 0 JRNL AUTH L.YAN,G.YANG JRNL TITL CROSS-REACTIVE EPITOPES BETWEEN HIV AND CORONAVIRUS REVEALED JRNL TITL 2 BY 3D1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.300 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 87810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.360 REMARK 3 FREE R VALUE TEST SET COUNT : 3826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9200 - 6.4100 0.93 3214 153 0.2401 0.2403 REMARK 3 2 6.4100 - 5.1200 0.94 3248 137 0.1967 0.2257 REMARK 3 3 5.1200 - 4.4800 0.95 3243 154 0.1649 0.1801 REMARK 3 4 4.4800 - 4.0700 0.95 3313 150 0.1623 0.1962 REMARK 3 5 4.0700 - 3.7800 0.96 3316 144 0.1873 0.2142 REMARK 3 6 3.7800 - 3.5600 0.92 3138 160 0.2145 0.2595 REMARK 3 7 3.5600 - 3.3800 0.94 3191 157 0.2145 0.2659 REMARK 3 8 3.3800 - 3.2400 0.94 3299 130 0.2131 0.2532 REMARK 3 9 3.2400 - 3.1100 0.94 3249 138 0.2264 0.2188 REMARK 3 10 3.1100 - 3.0100 0.95 3287 163 0.2138 0.2303 REMARK 3 11 3.0100 - 2.9100 0.94 3236 142 0.2122 0.2247 REMARK 3 12 2.9100 - 2.8300 0.95 3287 134 0.2143 0.2332 REMARK 3 13 2.8300 - 2.7600 0.89 3041 129 0.2289 0.2764 REMARK 3 14 2.7600 - 2.6900 0.92 3241 122 0.2261 0.2886 REMARK 3 15 2.6900 - 2.6300 0.92 3124 162 0.2209 0.2707 REMARK 3 16 2.6300 - 2.5700 0.93 3221 168 0.2304 0.3040 REMARK 3 17 2.5700 - 2.5200 0.93 3235 140 0.2352 0.2894 REMARK 3 18 2.5200 - 2.4700 0.94 3238 134 0.2428 0.3141 REMARK 3 19 2.4700 - 2.4300 0.94 3230 153 0.2427 0.3160 REMARK 3 20 2.4300 - 2.3900 0.94 3266 155 0.2403 0.2607 REMARK 3 21 2.3900 - 2.3500 0.94 3132 131 0.2413 0.2828 REMARK 3 22 2.3500 - 2.3100 0.93 3297 176 0.2476 0.2788 REMARK 3 23 2.3100 - 2.2800 0.87 2936 129 0.2581 0.3244 REMARK 3 24 2.2800 - 2.2500 0.87 3019 141 0.2678 0.3460 REMARK 3 25 2.2500 - 2.2200 0.86 3021 133 0.2828 0.3607 REMARK 3 26 2.2200 - 2.1900 0.75 2573 131 0.2750 0.3237 REMARK 3 27 2.1900 - 2.1600 0.41 1389 60 0.2832 0.4103 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 1 THROUGH 120) REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 2190 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 1 THROUGH 120) REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 2190 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 1 THROUGH 120) REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 2190 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND RESID 3 THROUGH 111) REMARK 3 SELECTION : (CHAIN D AND RESID 2 THROUGH 111) REMARK 3 ATOM PAIRS NUMBER : 1932 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN B AND RESID 3 THROUGH 111) REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 1932 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN B AND RESID 3 THROUGH 111) REMARK 3 SELECTION : (CHAIN L AND RESID 1 THROUGH 110) REMARK 3 ATOM PAIRS NUMBER : 1932 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 19.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KVF REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 0.1 M HEPES PH 7.5, REMARK 280 20% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 120 REMARK 465 GLY L 111 REMARK 465 GLN B 1 REMARK 465 SER B 2 REMARK 465 SER C 120 REMARK 465 GLN D 1 REMARK 465 SER E 120 REMARK 465 GLN F 1 REMARK 465 GLY F 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 9 CB SER B 9 OG -0.085 REMARK 500 GLU B 52 CD GLU B 52 OE2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 28 -89.48 -137.86 REMARK 500 TYR L 34 60.66 -102.33 REMARK 500 VAL L 53 -53.97 72.60 REMARK 500 ALA L 86 -179.68 -177.95 REMARK 500 ASP B 28 -96.16 -134.34 REMARK 500 TYR B 34 50.87 -100.55 REMARK 500 VAL B 53 -54.63 69.09 REMARK 500 ASP D 28 -87.23 -138.98 REMARK 500 TYR D 34 62.24 -104.10 REMARK 500 VAL D 53 -53.06 72.41 REMARK 500 GLU E 10 131.40 51.76 REMARK 500 ASP F 28 -90.77 -134.60 REMARK 500 TYR F 34 58.18 -104.96 REMARK 500 VAL F 53 -53.27 72.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 399 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B 366 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH E 297 DISTANCE = 6.86 ANGSTROMS DBREF 7YD3 H 1 120 PDB 7YD3 7YD3 1 120 DBREF 7YD3 L 1 111 PDB 7YD3 7YD3 1 111 DBREF 7YD3 A 1 120 PDB 7YD3 7YD3 1 120 DBREF 7YD3 B 1 111 PDB 7YD3 7YD3 1 111 DBREF 7YD3 C 1 120 PDB 7YD3 7YD3 1 120 DBREF 7YD3 D 1 111 PDB 7YD3 7YD3 1 111 DBREF 7YD3 E 1 120 PDB 7YD3 7YD3 1 120 DBREF 7YD3 F 1 111 PDB 7YD3 7YD3 1 111 SEQRES 1 H 120 GLN VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 H 120 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 H 120 TYR SER PHE THR SER LEU SER MET ASN TRP VAL ARG GLN SEQRES 4 H 120 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 120 THR LYS SER GLY ASP PRO THR TYR ALA GLN ALA PHE THR SEQRES 6 H 120 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL ASN THR SEQRES 7 H 120 ALA TYR LEU GLN ILE ASN SER LEU GLU ALA GLY ASP THR SEQRES 8 H 120 ALA VAL TYR TYR CYS ALA ARG GLY GLN PRO PRO VAL GLY SEQRES 9 H 120 TRP THR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 120 VAL SER SER SEQRES 1 L 111 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 L 111 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 L 111 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 111 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 L 111 VAL SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 111 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 L 111 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 111 SER TYR THR SER SER SER THR LEU VAL PHE GLY GLY GLY SEQRES 9 L 111 THR LYS LEU THR VAL LEU GLY SEQRES 1 A 120 GLN VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 A 120 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 A 120 TYR SER PHE THR SER LEU SER MET ASN TRP VAL ARG GLN SEQRES 4 A 120 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 A 120 THR LYS SER GLY ASP PRO THR TYR ALA GLN ALA PHE THR SEQRES 6 A 120 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL ASN THR SEQRES 7 A 120 ALA TYR LEU GLN ILE ASN SER LEU GLU ALA GLY ASP THR SEQRES 8 A 120 ALA VAL TYR TYR CYS ALA ARG GLY GLN PRO PRO VAL GLY SEQRES 9 A 120 TRP THR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 A 120 VAL SER SER SEQRES 1 B 111 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 B 111 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 B 111 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 B 111 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 B 111 VAL SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 B 111 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 B 111 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 B 111 SER TYR THR SER SER SER THR LEU VAL PHE GLY GLY GLY SEQRES 9 B 111 THR LYS LEU THR VAL LEU GLY SEQRES 1 C 120 GLN VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 C 120 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 C 120 TYR SER PHE THR SER LEU SER MET ASN TRP VAL ARG GLN SEQRES 4 C 120 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 C 120 THR LYS SER GLY ASP PRO THR TYR ALA GLN ALA PHE THR SEQRES 6 C 120 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL ASN THR SEQRES 7 C 120 ALA TYR LEU GLN ILE ASN SER LEU GLU ALA GLY ASP THR SEQRES 8 C 120 ALA VAL TYR TYR CYS ALA ARG GLY GLN PRO PRO VAL GLY SEQRES 9 C 120 TRP THR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 C 120 VAL SER SER SEQRES 1 D 111 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 D 111 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 D 111 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 D 111 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 D 111 VAL SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 D 111 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 D 111 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 D 111 SER TYR THR SER SER SER THR LEU VAL PHE GLY GLY GLY SEQRES 9 D 111 THR LYS LEU THR VAL LEU GLY SEQRES 1 E 120 GLN VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 E 120 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 E 120 TYR SER PHE THR SER LEU SER MET ASN TRP VAL ARG GLN SEQRES 4 E 120 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 E 120 THR LYS SER GLY ASP PRO THR TYR ALA GLN ALA PHE THR SEQRES 6 E 120 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL ASN THR SEQRES 7 E 120 ALA TYR LEU GLN ILE ASN SER LEU GLU ALA GLY ASP THR SEQRES 8 E 120 ALA VAL TYR TYR CYS ALA ARG GLY GLN PRO PRO VAL GLY SEQRES 9 E 120 TRP THR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 E 120 VAL SER SER SEQRES 1 F 111 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 F 111 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 F 111 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 F 111 GLN HIS PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU SEQRES 5 F 111 VAL SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 F 111 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 F 111 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 F 111 SER TYR THR SER SER SER THR LEU VAL PHE GLY GLY GLY SEQRES 9 F 111 THR LYS LEU THR VAL LEU GLY HET PEG H 201 7 HET EDO H 202 4 HET PEG A 201 7 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET PEG B 201 7 HET PEG B 202 7 HET EDO B 203 4 HET EDO C 201 4 HET CL D 201 1 HET EDO F 201 4 HET EDO F 202 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 9 PEG 4(C4 H10 O3) FORMUL 10 EDO 8(C2 H6 O2) FORMUL 19 CL CL 1- FORMUL 22 HOH *631(H2 O) HELIX 1 AA1 SER H 28 LEU H 32 5 5 HELIX 2 AA2 GLN H 62 THR H 65 5 4 HELIX 3 AA3 THR H 74 VAL H 76 5 3 HELIX 4 AA4 GLU H 87 THR H 91 5 5 HELIX 5 AA5 GLN L 81 GLU L 85 5 5 HELIX 6 AA6 SER A 28 LEU A 32 5 5 HELIX 7 AA7 GLN A 62 THR A 65 5 4 HELIX 8 AA8 THR A 74 VAL A 76 5 3 HELIX 9 AA9 GLU A 87 THR A 91 5 5 HELIX 10 AB1 GLN B 81 GLU B 85 5 5 HELIX 11 AB2 SER C 28 LEU C 32 5 5 HELIX 12 AB3 GLN C 62 THR C 65 5 4 HELIX 13 AB4 THR C 74 VAL C 76 5 3 HELIX 14 AB5 GLU C 87 THR C 91 5 5 HELIX 15 AB6 GLN D 81 GLU D 85 5 5 HELIX 16 AB7 SER E 28 LEU E 32 5 5 HELIX 17 AB8 GLN E 62 THR E 65 5 4 HELIX 18 AB9 THR E 74 VAL E 76 5 3 HELIX 19 AC1 GLU E 87 THR E 91 5 5 HELIX 20 AC2 GLN F 81 GLU F 85 5 5 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 78 ILE H 83 -1 O LEU H 81 N ILE H 20 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 114 VAL H 118 1 O LEU H 115 N GLU H 10 SHEET 3 AA2 6 ALA H 92 GLY H 99 -1 N ALA H 92 O VAL H 116 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 PRO H 58 TYR H 60 -1 O THR H 59 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 114 VAL H 118 1 O LEU H 115 N GLU H 10 SHEET 3 AA3 4 ALA H 92 GLY H 99 -1 N ALA H 92 O VAL H 116 SHEET 4 AA3 4 PHE H 107 TRP H 110 -1 O TYR H 109 N ARG H 98 SHEET 1 AA4 5 SER L 9 GLY L 12 0 SHEET 2 AA4 5 THR L 105 VAL L 109 1 O THR L 108 N ALA L 10 SHEET 3 AA4 5 ALA L 86 TYR L 93 -1 N ALA L 86 O LEU L 107 SHEET 4 AA4 5 VAL L 35 GLN L 40 -1 N GLN L 40 O ASP L 87 SHEET 5 AA4 5 LYS L 47 ILE L 50 -1 O LYS L 47 N GLN L 39 SHEET 1 AA5 4 SER L 9 GLY L 12 0 SHEET 2 AA5 4 THR L 105 VAL L 109 1 O THR L 108 N ALA L 10 SHEET 3 AA5 4 ALA L 86 TYR L 93 -1 N ALA L 86 O LEU L 107 SHEET 4 AA5 4 LEU L 99 PHE L 101 -1 O VAL L 100 N SER L 92 SHEET 1 AA6 3 VAL L 18 THR L 23 0 SHEET 2 AA6 3 THR L 72 VAL L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA6 3 PHE L 64 SER L 69 -1 N SER L 69 O THR L 72 SHEET 1 AA7 4 GLN A 3 GLN A 6 0 SHEET 2 AA7 4 VAL A 18 SER A 25 -1 O LYS A 23 N VAL A 5 SHEET 3 AA7 4 THR A 78 ILE A 83 -1 O LEU A 81 N ILE A 20 SHEET 4 AA7 4 PHE A 68 ASP A 73 -1 N ASP A 73 O THR A 78 SHEET 1 AA8 6 GLU A 10 LYS A 12 0 SHEET 2 AA8 6 THR A 114 VAL A 118 1 O LEU A 115 N GLU A 10 SHEET 3 AA8 6 ALA A 92 GLY A 99 -1 N ALA A 92 O VAL A 116 SHEET 4 AA8 6 MET A 34 GLN A 39 -1 N ASN A 35 O ALA A 97 SHEET 5 AA8 6 GLU A 46 ILE A 51 -1 O MET A 48 N TRP A 36 SHEET 6 AA8 6 PRO A 58 TYR A 60 -1 O THR A 59 N TRP A 50 SHEET 1 AA9 4 GLU A 10 LYS A 12 0 SHEET 2 AA9 4 THR A 114 VAL A 118 1 O LEU A 115 N GLU A 10 SHEET 3 AA9 4 ALA A 92 GLY A 99 -1 N ALA A 92 O VAL A 116 SHEET 4 AA9 4 PHE A 107 TRP A 110 -1 O TYR A 109 N ARG A 98 SHEET 1 AB1 5 SER B 9 GLY B 12 0 SHEET 2 AB1 5 THR B 105 VAL B 109 1 O LYS B 106 N ALA B 10 SHEET 3 AB1 5 ALA B 86 TYR B 93 -1 N ALA B 86 O LEU B 107 SHEET 4 AB1 5 VAL B 35 GLN B 40 -1 N GLN B 40 O ASP B 87 SHEET 5 AB1 5 LYS B 47 ILE B 50 -1 O LYS B 47 N GLN B 39 SHEET 1 AB2 4 SER B 9 GLY B 12 0 SHEET 2 AB2 4 THR B 105 VAL B 109 1 O LYS B 106 N ALA B 10 SHEET 3 AB2 4 ALA B 86 TYR B 93 -1 N ALA B 86 O LEU B 107 SHEET 4 AB2 4 LEU B 99 PHE B 101 -1 O VAL B 100 N SER B 92 SHEET 1 AB3 3 VAL B 18 THR B 23 0 SHEET 2 AB3 3 THR B 72 VAL B 77 -1 O ALA B 73 N CYS B 22 SHEET 3 AB3 3 PHE B 64 SER B 69 -1 N SER B 67 O SER B 74 SHEET 1 AB4 4 GLN C 3 GLN C 6 0 SHEET 2 AB4 4 VAL C 18 SER C 25 -1 O LYS C 23 N VAL C 5 SHEET 3 AB4 4 THR C 78 ILE C 83 -1 O LEU C 81 N ILE C 20 SHEET 4 AB4 4 PHE C 68 ASP C 73 -1 N ASP C 73 O THR C 78 SHEET 1 AB5 6 GLU C 10 LYS C 12 0 SHEET 2 AB5 6 THR C 114 VAL C 118 1 O THR C 117 N LYS C 12 SHEET 3 AB5 6 ALA C 92 GLY C 99 -1 N ALA C 92 O VAL C 116 SHEET 4 AB5 6 MET C 34 GLN C 39 -1 N VAL C 37 O TYR C 95 SHEET 5 AB5 6 GLU C 46 ILE C 51 -1 O MET C 48 N TRP C 36 SHEET 6 AB5 6 PRO C 58 TYR C 60 -1 O THR C 59 N TRP C 50 SHEET 1 AB6 4 GLU C 10 LYS C 12 0 SHEET 2 AB6 4 THR C 114 VAL C 118 1 O THR C 117 N LYS C 12 SHEET 3 AB6 4 ALA C 92 GLY C 99 -1 N ALA C 92 O VAL C 116 SHEET 4 AB6 4 PHE C 107 TRP C 110 -1 O TYR C 109 N ARG C 98 SHEET 1 AB7 5 SER D 9 GLY D 12 0 SHEET 2 AB7 5 THR D 105 VAL D 109 1 O THR D 108 N ALA D 10 SHEET 3 AB7 5 ALA D 86 TYR D 93 -1 N ALA D 86 O LEU D 107 SHEET 4 AB7 5 VAL D 35 GLN D 40 -1 N GLN D 40 O ASP D 87 SHEET 5 AB7 5 LYS D 47 ILE D 50 -1 O LYS D 47 N GLN D 39 SHEET 1 AB8 4 SER D 9 GLY D 12 0 SHEET 2 AB8 4 THR D 105 VAL D 109 1 O THR D 108 N ALA D 10 SHEET 3 AB8 4 ALA D 86 TYR D 93 -1 N ALA D 86 O LEU D 107 SHEET 4 AB8 4 LEU D 99 PHE D 101 -1 O VAL D 100 N SER D 92 SHEET 1 AB9 3 VAL D 18 THR D 23 0 SHEET 2 AB9 3 THR D 72 VAL D 77 -1 O LEU D 75 N ILE D 20 SHEET 3 AB9 3 PHE D 64 SER D 69 -1 N SER D 65 O THR D 76 SHEET 1 AC1 4 GLN E 3 GLN E 6 0 SHEET 2 AC1 4 VAL E 18 SER E 25 -1 O LYS E 23 N VAL E 5 SHEET 3 AC1 4 THR E 78 ILE E 83 -1 O LEU E 81 N ILE E 20 SHEET 4 AC1 4 PHE E 68 ASP E 73 -1 N ASP E 73 O THR E 78 SHEET 1 AC2 6 LEU E 11 LYS E 12 0 SHEET 2 AC2 6 THR E 114 VAL E 118 1 O THR E 117 N LYS E 12 SHEET 3 AC2 6 ALA E 92 GLY E 99 -1 N TYR E 94 O THR E 114 SHEET 4 AC2 6 MET E 34 GLN E 39 -1 N ASN E 35 O ALA E 97 SHEET 5 AC2 6 LEU E 45 ILE E 51 -1 O GLU E 46 N ARG E 38 SHEET 6 AC2 6 PRO E 58 TYR E 60 -1 O THR E 59 N TRP E 50 SHEET 1 AC3 4 LEU E 11 LYS E 12 0 SHEET 2 AC3 4 THR E 114 VAL E 118 1 O THR E 117 N LYS E 12 SHEET 3 AC3 4 ALA E 92 GLY E 99 -1 N TYR E 94 O THR E 114 SHEET 4 AC3 4 PHE E 107 TRP E 110 -1 O TYR E 109 N ARG E 98 SHEET 1 AC4 5 SER F 9 GLY F 12 0 SHEET 2 AC4 5 THR F 105 VAL F 109 1 O THR F 108 N ALA F 10 SHEET 3 AC4 5 ALA F 86 TYR F 93 -1 N ALA F 86 O LEU F 107 SHEET 4 AC4 5 VAL F 35 GLN F 40 -1 N GLN F 40 O ASP F 87 SHEET 5 AC4 5 LYS F 47 ILE F 50 -1 O LYS F 47 N GLN F 39 SHEET 1 AC5 4 SER F 9 GLY F 12 0 SHEET 2 AC5 4 THR F 105 VAL F 109 1 O THR F 108 N ALA F 10 SHEET 3 AC5 4 ALA F 86 TYR F 93 -1 N ALA F 86 O LEU F 107 SHEET 4 AC5 4 LEU F 99 PHE F 101 -1 O VAL F 100 N SER F 92 SHEET 1 AC6 3 VAL F 18 THR F 23 0 SHEET 2 AC6 3 THR F 72 VAL F 77 -1 O ALA F 73 N CYS F 22 SHEET 3 AC6 3 PHE F 64 SER F 69 -1 N SER F 65 O THR F 76 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS L 22 CYS L 90 1555 1555 2.03 SSBOND 3 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 4 CYS B 22 CYS B 90 1555 1555 1.96 SSBOND 5 CYS C 22 CYS C 96 1555 1555 2.06 SSBOND 6 CYS D 22 CYS D 90 1555 1555 2.03 SSBOND 7 CYS E 22 CYS E 96 1555 1555 2.05 SSBOND 8 CYS F 22 CYS F 90 1555 1555 2.03 CISPEP 1 PRO H 101 PRO H 102 0 6.61 CISPEP 2 PRO A 101 PRO A 102 0 4.96 CISPEP 3 PRO C 101 PRO C 102 0 14.51 CISPEP 4 PRO E 101 PRO E 102 0 5.11 CRYST1 47.183 70.490 74.815 108.83 93.82 90.09 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021194 0.000034 0.001508 0.00000 SCALE2 0.000000 0.014186 0.004850 0.00000 SCALE3 0.000000 0.000000 0.014157 0.00000