HEADER TRANSFERASE 04-JUL-22 7YDX TITLE CRYSTAL STRUCTURE OF HUMAN RIPK1 KINASE DOMAIN IN COMPLEX WITH TITLE 2 COMPOUND RI-962 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CELL DEATH PROTEIN RIP,RECEPTOR-INTERACTING PROTEIN 1,RIP-1; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK1, RIP, RIP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS RIPK1, KINASE, COMPLEX, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.ZHANG,Y.WANG,Y.LI,C.WU,X.LUO,T.WANG,J.LEI,S.YANG REVDAT 2 29-NOV-23 7YDX 1 REMARK REVDAT 1 19-APR-23 7YDX 0 JRNL AUTH Y.LI,L.ZHANG,Y.WANG,J.ZOU,R.YANG,X.LUO,C.WU,W.YANG,C.TIAN, JRNL AUTH 2 H.XU,F.WANG,X.YANG,L.LI,S.YANG JRNL TITL GENERATIVE DEEP LEARNING ENABLES THE DISCOVERY OF A POTENT JRNL TITL 2 AND SELECTIVE RIPK1 INHIBITOR. JRNL REF NAT COMMUN V. 13 6891 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 36371441 JRNL DOI 10.1038/S41467-022-34692-W REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 18433 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7650 - 6.2088 1.00 1414 157 0.2289 0.2527 REMARK 3 2 6.2088 - 4.9296 1.00 1328 148 0.2433 0.2480 REMARK 3 3 4.9296 - 4.3069 1.00 1307 146 0.2118 0.1897 REMARK 3 4 4.3069 - 3.9133 1.00 1301 143 0.2303 0.2470 REMARK 3 5 3.9133 - 3.6329 1.00 1294 145 0.2487 0.2798 REMARK 3 6 3.6329 - 3.4188 1.00 1286 143 0.2636 0.3283 REMARK 3 7 3.4188 - 3.2476 1.00 1287 142 0.2872 0.3936 REMARK 3 8 3.2476 - 3.1062 1.00 1284 143 0.2991 0.3655 REMARK 3 9 3.1062 - 2.9867 1.00 1260 141 0.3157 0.3468 REMARK 3 10 2.9867 - 2.8836 1.00 1296 143 0.3290 0.3766 REMARK 3 11 2.8836 - 2.7935 1.00 1245 139 0.3274 0.3330 REMARK 3 12 2.7935 - 2.7136 0.98 1261 140 0.3070 0.3991 REMARK 3 13 2.7136 - 2.6422 0.82 1026 114 0.3227 0.3429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9844 -15.8642 26.1282 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.2174 REMARK 3 T33: 0.2289 T12: 0.0106 REMARK 3 T13: -0.0713 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.3320 L22: 2.2901 REMARK 3 L33: 1.3756 L12: 0.2490 REMARK 3 L13: -0.4026 L23: 0.3849 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: -0.0497 S13: -0.1866 REMARK 3 S21: 0.0989 S22: 0.0998 S23: -0.1844 REMARK 3 S31: 0.1066 S32: 0.0079 S33: -0.0302 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4697 -6.8795 20.6015 REMARK 3 T TENSOR REMARK 3 T11: -0.0260 T22: 0.3315 REMARK 3 T33: 0.4970 T12: -0.0041 REMARK 3 T13: -0.1506 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: -0.0521 L22: 0.9043 REMARK 3 L33: -0.0221 L12: -0.2421 REMARK 3 L13: 0.1814 L23: -0.3386 REMARK 3 S TENSOR REMARK 3 S11: -0.7120 S12: -0.0360 S13: -0.4241 REMARK 3 S21: -0.3741 S22: 0.1371 S23: -0.8683 REMARK 3 S31: -0.4943 S32: 1.1907 S33: -0.0134 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8209 7.6919 19.2075 REMARK 3 T TENSOR REMARK 3 T11: 0.3527 T22: 0.2512 REMARK 3 T33: 0.1503 T12: 0.1095 REMARK 3 T13: -0.1284 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.8564 L22: 1.2213 REMARK 3 L33: 1.2035 L12: 0.0767 REMARK 3 L13: -0.5119 L23: -0.3664 REMARK 3 S TENSOR REMARK 3 S11: 0.3768 S12: 0.2668 S13: 0.2771 REMARK 3 S21: 0.1556 S22: 0.0421 S23: -0.0300 REMARK 3 S31: -0.8068 S32: -0.4328 S33: -0.0334 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 9 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7929 5.6497 52.6043 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.2359 REMARK 3 T33: 0.2049 T12: -0.0176 REMARK 3 T13: 0.0047 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 1.0289 L22: 2.1140 REMARK 3 L33: 0.9941 L12: -0.6812 REMARK 3 L13: -0.1129 L23: -0.2692 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.0787 S13: 0.1258 REMARK 3 S21: 0.3313 S22: 0.0015 S23: -0.0214 REMARK 3 S31: -0.1158 S32: 0.0199 S33: -0.0097 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6789 -16.6416 54.6388 REMARK 3 T TENSOR REMARK 3 T11: 0.2727 T22: 0.1902 REMARK 3 T33: 0.3095 T12: -0.0385 REMARK 3 T13: -0.0381 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 1.2659 L22: 1.1494 REMARK 3 L33: 2.0468 L12: 0.1416 REMARK 3 L13: 0.3294 L23: -0.0757 REMARK 3 S TENSOR REMARK 3 S11: 0.1626 S12: -0.0235 S13: -0.1578 REMARK 3 S21: 0.1097 S22: 0.0228 S23: 0.3021 REMARK 3 S31: 0.5003 S32: -0.2297 S33: -0.0258 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97852 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X CDTE 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.30 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.167 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ITJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M AMMONIUM IODIDE, 0.03M GLYCYL REMARK 280 -GLYCYL-GLYCINE, 23% POLYETHYLENE GLYCOL (PEG) 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.78450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.18850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.18850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.78450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -23.78450 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -66.18850 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 PRO A 3 REMARK 465 ASP A 4 REMARK 465 MET A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 ASP A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 PHE A 28 REMARK 465 ARG A 177 REMARK 465 GLU A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ASN A 186 REMARK 465 GLY A 187 REMARK 465 MET B 1 REMARK 465 GLN B 2 REMARK 465 PRO B 3 REMARK 465 ASP B 4 REMARK 465 MET B 5 REMARK 465 SER B 6 REMARK 465 LEU B 7 REMARK 465 ASN B 8 REMARK 465 SER B 20 REMARK 465 ALA B 21 REMARK 465 GLU B 22 REMARK 465 LEU B 23 REMARK 465 ASP B 24 REMARK 465 SER B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 PHE B 28 REMARK 465 GLU B 172 REMARK 465 HIS B 173 REMARK 465 ASN B 174 REMARK 465 GLU B 175 REMARK 465 LEU B 176 REMARK 465 ARG B 177 REMARK 465 GLU B 178 REMARK 465 VAL B 179 REMARK 465 ASP B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 ASN B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 MET A 108 CG SD CE REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 MET B 108 CG SD CE REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 ILE B 232 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 56 -6.15 -151.35 REMARK 500 LYS A 137 -7.97 80.87 REMARK 500 ASP A 138 36.86 -146.70 REMARK 500 LEU A 293 -41.71 -136.07 REMARK 500 CYS B 53 57.43 -159.63 REMARK 500 GLU B 85 107.45 -55.00 REMARK 500 LYS B 137 -9.86 80.05 REMARK 500 ASP B 138 39.63 -149.00 REMARK 500 TYR B 228 66.68 60.73 REMARK 500 GLU B 229 -52.73 -20.70 REMARK 500 ALA B 231 46.20 73.29 REMARK 500 GLU B 234 -170.03 -174.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YDX A 1 294 UNP Q13546 RIPK1_HUMAN 1 294 DBREF 7YDX B 1 294 UNP Q13546 RIPK1_HUMAN 1 294 SEQADV 7YDX ALA A 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 7YDX ALA A 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 7YDX ALA A 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 7YDX ALA A 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQADV 7YDX ALA B 34 UNP Q13546 CYS 34 ENGINEERED MUTATION SEQADV 7YDX ALA B 127 UNP Q13546 CYS 127 ENGINEERED MUTATION SEQADV 7YDX ALA B 233 UNP Q13546 CYS 233 ENGINEERED MUTATION SEQADV 7YDX ALA B 240 UNP Q13546 CYS 240 ENGINEERED MUTATION SEQRES 1 A 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 A 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 A 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 A 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 A 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 A 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 A 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 A 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 A 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 A 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 A 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 A 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 A 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 A 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 A 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 A 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 A 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 A 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 A 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 A 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 A 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 A 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 A 294 PRO PHE TYR LEU SER GLN LEU GLU SEQRES 1 B 294 MET GLN PRO ASP MET SER LEU ASN VAL ILE LYS MET LYS SEQRES 2 B 294 SER SER ASP PHE LEU GLU SER ALA GLU LEU ASP SER GLY SEQRES 3 B 294 GLY PHE GLY LYS VAL SER LEU ALA PHE HIS ARG THR GLN SEQRES 4 B 294 GLY LEU MET ILE MET LYS THR VAL TYR LYS GLY PRO ASN SEQRES 5 B 294 CYS ILE GLU HIS ASN GLU ALA LEU LEU GLU GLU ALA LYS SEQRES 6 B 294 MET MET ASN ARG LEU ARG HIS SER ARG VAL VAL LYS LEU SEQRES 7 B 294 LEU GLY VAL ILE ILE GLU GLU GLY LYS TYR SER LEU VAL SEQRES 8 B 294 MET GLU TYR MET GLU LYS GLY ASN LEU MET HIS VAL LEU SEQRES 9 B 294 LYS ALA GLU MET SER THR PRO LEU SER VAL LYS GLY ARG SEQRES 10 B 294 ILE ILE LEU GLU ILE ILE GLU GLY MET ALA TYR LEU HIS SEQRES 11 B 294 GLY LYS GLY VAL ILE HIS LYS ASP LEU LYS PRO GLU ASN SEQRES 12 B 294 ILE LEU VAL ASP ASN ASP PHE HIS ILE LYS ILE ALA ASP SEQRES 13 B 294 LEU GLY LEU ALA SER PHE LYS MET TRP SER LYS LEU ASN SEQRES 14 B 294 ASN GLU GLU HIS ASN GLU LEU ARG GLU VAL ASP GLY THR SEQRES 15 B 294 ALA LYS LYS ASN GLY GLY THR LEU TYR TYR MET ALA PRO SEQRES 16 B 294 GLU HIS LEU ASN ASP VAL ASN ALA LYS PRO THR GLU LYS SEQRES 17 B 294 SER ASP VAL TYR SER PHE ALA VAL VAL LEU TRP ALA ILE SEQRES 18 B 294 PHE ALA ASN LYS GLU PRO TYR GLU ASN ALA ILE ALA GLU SEQRES 19 B 294 GLN GLN LEU ILE MET ALA ILE LYS SER GLY ASN ARG PRO SEQRES 20 B 294 ASP VAL ASP ASP ILE THR GLU TYR CYS PRO ARG GLU ILE SEQRES 21 B 294 ILE SER LEU MET LYS LEU CYS TRP GLU ALA ASN PRO GLU SEQRES 22 B 294 ALA ARG PRO THR PHE PRO GLY ILE GLU GLU LYS PHE ARG SEQRES 23 B 294 PRO PHE TYR LEU SER GLN LEU GLU HET 3CI A 301 36 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET 3CI B 301 36 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HETNAM 3CI 1-METHYL-5-[2-(2-METHYLPROPANOYLAMINO)-[1,2, HETNAM 2 3CI 4]TRIAZOLO[1,5-A]PYRIDIN-7-YL]-N-[(1S)-1- HETNAM 3 3CI PHENYLETHYL]INDOLE-3-CARBOXAMIDE HETNAM IOD IODIDE ION FORMUL 3 3CI 2(C28 H28 N6 O2) FORMUL 4 IOD 7(I 1-) FORMUL 12 HOH *65(H2 O) HELIX 1 AA1 LYS A 13 SER A 15 5 3 HELIX 2 AA2 HIS A 56 ARG A 69 1 14 HELIX 3 AA3 LEU A 100 LYS A 105 1 6 HELIX 4 AA4 PRO A 111 LYS A 132 1 22 HELIX 5 AA5 LYS A 140 GLU A 142 5 3 HELIX 6 AA6 PHE A 162 GLU A 171 1 10 HELIX 7 AA7 ALA A 194 LEU A 198 5 5 HELIX 8 AA8 THR A 206 ASN A 224 1 19 HELIX 9 AA9 ALA A 233 SER A 243 1 11 HELIX 10 AB1 ASP A 248 ILE A 252 5 5 HELIX 11 AB2 PRO A 257 TRP A 268 1 12 HELIX 12 AB3 ASN A 271 ARG A 275 5 5 HELIX 13 AB4 THR A 277 LEU A 293 1 17 HELIX 14 AB5 LYS B 13 PHE B 17 5 5 HELIX 15 AB6 CYS B 53 GLU B 55 5 3 HELIX 16 AB7 HIS B 56 ARG B 69 1 14 HELIX 17 AB8 ASN B 99 LYS B 105 1 7 HELIX 18 AB9 PRO B 111 LYS B 132 1 22 HELIX 19 AC1 LYS B 140 GLU B 142 5 3 HELIX 20 AC2 PHE B 162 GLU B 171 1 10 HELIX 21 AC3 ALA B 194 LEU B 198 5 5 HELIX 22 AC4 THR B 206 ASN B 224 1 19 HELIX 23 AC5 GLU B 234 SER B 243 1 10 HELIX 24 AC6 ASP B 248 ILE B 252 5 5 HELIX 25 AC7 PRO B 257 TRP B 268 1 12 HELIX 26 AC8 ASN B 271 ARG B 275 5 5 HELIX 27 AC9 THR B 277 LEU B 293 1 17 SHEET 1 AA1 5 PHE A 17 GLU A 22 0 SHEET 2 AA1 5 LYS A 30 HIS A 36 -1 O LEU A 33 N ALA A 21 SHEET 3 AA1 5 GLY A 40 LYS A 49 -1 O MET A 42 N ALA A 34 SHEET 4 AA1 5 LYS A 87 MET A 92 -1 O LEU A 90 N LYS A 45 SHEET 5 AA1 5 LEU A 78 GLU A 84 -1 N GLU A 84 O LYS A 87 SHEET 1 AA2 3 GLY A 98 ASN A 99 0 SHEET 2 AA2 3 ILE A 144 VAL A 146 -1 O VAL A 146 N GLY A 98 SHEET 3 AA2 3 ILE A 152 ILE A 154 -1 O LYS A 153 N LEU A 145 SHEET 1 AA3 4 LYS B 30 HIS B 36 0 SHEET 2 AA3 4 GLY B 40 LYS B 49 -1 O MET B 44 N SER B 32 SHEET 3 AA3 4 LYS B 87 MET B 92 -1 O TYR B 88 N TYR B 48 SHEET 4 AA3 4 LEU B 78 GLU B 84 -1 N GLY B 80 O VAL B 91 SHEET 1 AA4 2 ILE B 144 VAL B 146 0 SHEET 2 AA4 2 ILE B 152 ILE B 154 -1 O LYS B 153 N LEU B 145 CRYST1 47.569 97.530 132.377 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021022 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010253 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007554 0.00000