data_7YFU # _entry.id 7YFU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.368 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YFU pdb_00007yfu 10.2210/pdb7yfu/pdb WWPDB D_1300030834 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YFU _pdbx_database_status.recvd_initial_deposition_date 2022-07-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, R.' 1 ? 'Chen, G.' 2 ? 'Li, Z.' 3 ? 'Li, J.' 4 0000-0002-8921-1626 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Iscience _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2589-0042 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 106249 _citation.page_last 106249 _citation.title 'Structure of the N-terminal coiled-coil domains of the ciliary protein Rpgrip1l.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.isci.2023.106249 _citation.pdbx_database_id_PubMed 36915689 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, R.' 1 ? primary 'Chen, G.' 2 ? primary 'Li, Z.' 3 ? primary 'Li, J.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.690 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7YFU _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.620 _cell.length_a_esd ? _cell.length_b 26.939 _cell.length_b_esd ? _cell.length_c 37.469 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7YFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Protein fantom' 5252.910 2 ? ? ? ? 2 water nat water 18.015 112 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nephrocystin-8,RPGR-interacting protein 1-like protein,RPGRIP1-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GPGSRDVEMEEMIEQLQEKVHELERQNEVLKNRLISAKQQLQVQG _entity_poly.pdbx_seq_one_letter_code_can GPGSRDVEMEEMIEQLQEKVHELERQNEVLKNRLISAKQQLQVQG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 GLY n 1 4 SER n 1 5 ARG n 1 6 ASP n 1 7 VAL n 1 8 GLU n 1 9 MET n 1 10 GLU n 1 11 GLU n 1 12 MET n 1 13 ILE n 1 14 GLU n 1 15 GLN n 1 16 LEU n 1 17 GLN n 1 18 GLU n 1 19 LYS n 1 20 VAL n 1 21 HIS n 1 22 GLU n 1 23 LEU n 1 24 GLU n 1 25 ARG n 1 26 GLN n 1 27 ASN n 1 28 GLU n 1 29 VAL n 1 30 LEU n 1 31 LYS n 1 32 ASN n 1 33 ARG n 1 34 LEU n 1 35 ILE n 1 36 SER n 1 37 ALA n 1 38 LYS n 1 39 GLN n 1 40 GLN n 1 41 LEU n 1 42 GLN n 1 43 VAL n 1 44 GLN n 1 45 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 45 _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Rpgrip1l, Ftm, Nphp8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FTM_MOUSE _struct_ref.pdbx_db_accession Q8CG73 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RDVEMEEMIEQLQEKVHELERQNEVLKNRLISAKQQLQVQG _struct_ref.pdbx_align_begin 104 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7YFU A 5 ? 45 ? Q8CG73 104 ? 144 ? 1 41 2 1 7YFU B 5 ? 45 ? Q8CG73 104 ? 144 ? 1 41 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7YFU GLY A 1 ? UNP Q8CG73 ? ? 'expression tag' -3 1 1 7YFU PRO A 2 ? UNP Q8CG73 ? ? 'expression tag' -2 2 1 7YFU GLY A 3 ? UNP Q8CG73 ? ? 'expression tag' -1 3 1 7YFU SER A 4 ? UNP Q8CG73 ? ? 'expression tag' 0 4 2 7YFU GLY B 1 ? UNP Q8CG73 ? ? 'expression tag' -3 5 2 7YFU PRO B 2 ? UNP Q8CG73 ? ? 'expression tag' -2 6 2 7YFU GLY B 3 ? UNP Q8CG73 ? ? 'expression tag' -1 7 2 7YFU SER B 4 ? UNP Q8CG73 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YFU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.0 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-01-08 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97915 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97915 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7YFU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 30.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13124 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.700 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.900 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 9.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.260 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.071 _reflns.pdbx_Rpim_I_all 0.029 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 77240 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 1.500 1.530 ? ? ? ? ? ? 551 85.200 ? ? ? ? 0.336 ? ? ? ? ? ? ? ? 4.100 ? 1.159 ? ? 0.383 0.177 ? 1 1 0.958 ? ? ? ? ? ? ? ? ? ? 1.530 1.550 ? ? ? ? ? ? 600 92.200 ? ? ? ? 0.397 ? ? ? ? ? ? ? ? 4.700 ? 0.998 ? ? 0.447 0.199 ? 2 1 0.938 ? ? ? ? ? ? ? ? ? ? 1.550 1.580 ? ? ? ? ? ? 667 98.200 ? ? ? ? 0.356 ? ? ? ? ? ? ? ? 5.600 ? 0.926 ? ? 0.392 0.162 ? 3 1 0.958 ? ? ? ? ? ? ? ? ? ? 1.580 1.620 ? ? ? ? ? ? 620 99.500 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 6.100 ? 0.911 ? ? 0.354 0.139 ? 4 1 0.973 ? ? ? ? ? ? ? ? ? ? 1.620 1.650 ? ? ? ? ? ? 673 99.700 ? ? ? ? 0.295 ? ? ? ? ? ? ? ? 6.300 ? 0.832 ? ? 0.321 0.125 ? 5 1 0.972 ? ? ? ? ? ? ? ? ? ? 1.650 1.690 ? ? ? ? ? ? 662 99.800 ? ? ? ? 0.260 ? ? ? ? ? ? ? ? 6.200 ? 0.734 ? ? 0.283 0.111 ? 6 1 0.976 ? ? ? ? ? ? ? ? ? ? 1.690 1.730 ? ? ? ? ? ? 652 100.000 ? ? ? ? 0.229 ? ? ? ? ? ? ? ? 6.100 ? 0.746 ? ? 0.250 0.099 ? 7 1 0.981 ? ? ? ? ? ? ? ? ? ? 1.730 1.780 ? ? ? ? ? ? 679 100.000 ? ? ? ? 0.198 ? ? ? ? ? ? ? ? 5.800 ? 0.748 ? ? 0.217 0.089 ? 8 1 0.982 ? ? ? ? ? ? ? ? ? ? 1.780 1.830 ? ? ? ? ? ? 632 100.000 ? ? ? ? 0.162 ? ? ? ? ? ? ? ? 5.800 ? 0.829 ? ? 0.178 0.073 ? 9 1 0.986 ? ? ? ? ? ? ? ? ? ? 1.830 1.890 ? ? ? ? ? ? 663 100.000 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 6.300 ? 0.813 ? ? 0.153 0.059 ? 10 1 0.992 ? ? ? ? ? ? ? ? ? ? 1.890 1.960 ? ? ? ? ? ? 670 99.900 ? ? ? ? 0.131 ? ? ? ? ? ? ? ? 6.400 ? 0.940 ? ? 0.143 0.055 ? 11 1 0.992 ? ? ? ? ? ? ? ? ? ? 1.960 2.040 ? ? ? ? ? ? 654 100.000 ? ? ? ? 0.105 ? ? ? ? ? ? ? ? 6.200 ? 0.995 ? ? 0.114 0.045 ? 12 1 0.993 ? ? ? ? ? ? ? ? ? ? 2.040 2.130 ? ? ? ? ? ? 666 100.000 ? ? ? ? 0.083 ? ? ? ? ? ? ? ? 5.700 ? 1.193 ? ? 0.091 0.037 ? 13 1 0.994 ? ? ? ? ? ? ? ? ? ? 2.130 2.240 ? ? ? ? ? ? 666 100.000 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 5.900 ? 1.487 ? ? 0.080 0.033 ? 14 1 0.995 ? ? ? ? ? ? ? ? ? ? 2.240 2.380 ? ? ? ? ? ? 670 100.000 ? ? ? ? 0.066 ? ? ? ? ? ? ? ? 6.300 ? 1.491 ? ? 0.072 0.028 ? 15 1 0.996 ? ? ? ? ? ? ? ? ? ? 2.380 2.560 ? ? ? ? ? ? 664 100.000 ? ? ? ? 0.061 ? ? ? ? ? ? ? ? 6.300 ? 1.698 ? ? 0.066 0.026 ? 16 1 0.996 ? ? ? ? ? ? ? ? ? ? 2.560 2.820 ? ? ? ? ? ? 664 99.800 ? ? ? ? 0.053 ? ? ? ? ? ? ? ? 5.800 ? 1.684 ? ? 0.058 0.024 ? 17 1 0.998 ? ? ? ? ? ? ? ? ? ? 2.820 3.230 ? ? ? ? ? ? 674 99.900 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 6.300 ? 2.030 ? ? 0.055 0.022 ? 18 1 0.998 ? ? ? ? ? ? ? ? ? ? 3.230 4.070 ? ? ? ? ? ? 688 100.000 ? ? ? ? 0.046 ? ? ? ? ? ? ? ? 5.800 ? 2.342 ? ? 0.051 0.021 ? 19 1 0.998 ? ? ? ? ? ? ? ? ? ? 4.070 30.000 ? ? ? ? ? ? 709 99.400 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 5.700 ? 2.458 ? ? 0.053 0.022 ? 20 1 0.997 ? ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 106.230 _refine.B_iso_mean 27.9743 _refine.B_iso_min 10.090 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7YFU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 21.1600 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13120 _refine.ls_number_reflns_R_free 628 _refine.ls_number_reflns_R_work 12492 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.5900 _refine.ls_percent_reflns_R_free 4.7900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1791 _refine.ls_R_factor_R_free 0.2154 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1773 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 22.5400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 21.1600 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 826 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 88 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 37.18 _refine_hist.pdbx_number_atoms_protein 714 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5000 1.6500 3105 . 145 2960 94.0000 . . . 0.1957 0.0000 0.1771 . . . . . . . 4 . . . 'X-RAY DIFFRACTION' 1.6500 1.8900 3286 . 157 3129 100.0000 . . . 0.2237 0.0000 0.1953 . . . . . . . 4 . . . 'X-RAY DIFFRACTION' 1.8900 2.3800 3325 . 159 3166 100.0000 . . . 0.2212 0.0000 0.1898 . . . . . . . 4 . . . 'X-RAY DIFFRACTION' 2.3800 21.1600 3404 . 167 3237 100.0000 . . . 0.2139 0.0000 0.1681 . . . . . . . 4 . . . # _struct.entry_id 7YFU _struct.title 'Structure of Rpgrip1l CC2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YFU _struct_keywords.text 'STRUCTURAL PROTEIN, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 6 ? VAL A 43 ? ASP A 2 VAL A 39 1 ? 38 HELX_P HELX_P2 AA2 ASP B 6 ? GLN B 42 ? ASP B 2 GLN B 38 1 ? 37 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7YFU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012252 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000148 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.037121 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026691 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY A . n A 1 2 PRO 2 -2 -2 PRO PRO A . n A 1 3 GLY 3 -1 -1 GLY GLY A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 ARG 5 1 1 ARG ARG A . n A 1 6 ASP 6 2 2 ASP ASP A . n A 1 7 VAL 7 3 3 VAL VAL A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 MET 9 5 5 MET MET A . n A 1 10 GLU 10 6 6 GLU GLU A . n A 1 11 GLU 11 7 7 GLU GLU A . n A 1 12 MET 12 8 8 MET MET A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 GLU 14 10 10 GLU GLU A . n A 1 15 GLN 15 11 11 GLN GLN A . n A 1 16 LEU 16 12 12 LEU LEU A . n A 1 17 GLN 17 13 13 GLN GLN A . n A 1 18 GLU 18 14 14 GLU GLU A . n A 1 19 LYS 19 15 15 LYS LYS A . n A 1 20 VAL 20 16 16 VAL VAL A . n A 1 21 HIS 21 17 17 HIS HIS A . n A 1 22 GLU 22 18 18 GLU GLU A . n A 1 23 LEU 23 19 19 LEU LEU A . n A 1 24 GLU 24 20 20 GLU GLU A . n A 1 25 ARG 25 21 21 ARG ARG A . n A 1 26 GLN 26 22 22 GLN GLN A . n A 1 27 ASN 27 23 23 ASN ASN A . n A 1 28 GLU 28 24 24 GLU GLU A . n A 1 29 VAL 29 25 25 VAL VAL A . n A 1 30 LEU 30 26 26 LEU LEU A . n A 1 31 LYS 31 27 27 LYS LYS A . n A 1 32 ASN 32 28 28 ASN ASN A . n A 1 33 ARG 33 29 29 ARG ARG A . n A 1 34 LEU 34 30 30 LEU LEU A . n A 1 35 ILE 35 31 31 ILE ILE A . n A 1 36 SER 36 32 32 SER SER A . n A 1 37 ALA 37 33 33 ALA ALA A . n A 1 38 LYS 38 34 34 LYS LYS A . n A 1 39 GLN 39 35 35 GLN GLN A . n A 1 40 GLN 40 36 36 GLN GLN A . n A 1 41 LEU 41 37 37 LEU LEU A . n A 1 42 GLN 42 38 38 GLN GLN A . n A 1 43 VAL 43 39 39 VAL VAL A . n A 1 44 GLN 44 40 40 GLN GLN A . n A 1 45 GLY 45 41 ? ? ? A . n B 1 1 GLY 1 -3 -3 GLY GLY B . n B 1 2 PRO 2 -2 -2 PRO PRO B . n B 1 3 GLY 3 -1 -1 GLY GLY B . n B 1 4 SER 4 0 0 SER SER B . n B 1 5 ARG 5 1 1 ARG ARG B . n B 1 6 ASP 6 2 2 ASP ASP B . n B 1 7 VAL 7 3 3 VAL VAL B . n B 1 8 GLU 8 4 4 GLU GLU B . n B 1 9 MET 9 5 5 MET MET B . n B 1 10 GLU 10 6 6 GLU GLU B . n B 1 11 GLU 11 7 7 GLU GLU B . n B 1 12 MET 12 8 8 MET MET B . n B 1 13 ILE 13 9 9 ILE ILE B . n B 1 14 GLU 14 10 10 GLU GLU B . n B 1 15 GLN 15 11 11 GLN GLN B . n B 1 16 LEU 16 12 12 LEU LEU B . n B 1 17 GLN 17 13 13 GLN GLN B . n B 1 18 GLU 18 14 14 GLU GLU B . n B 1 19 LYS 19 15 15 LYS LYS B . n B 1 20 VAL 20 16 16 VAL VAL B . n B 1 21 HIS 21 17 17 HIS HIS B . n B 1 22 GLU 22 18 18 GLU GLU B . n B 1 23 LEU 23 19 19 LEU LEU B . n B 1 24 GLU 24 20 20 GLU GLU B . n B 1 25 ARG 25 21 21 ARG ARG B . n B 1 26 GLN 26 22 22 GLN GLN B . n B 1 27 ASN 27 23 23 ASN ASN B . n B 1 28 GLU 28 24 24 GLU GLU B . n B 1 29 VAL 29 25 25 VAL VAL B . n B 1 30 LEU 30 26 26 LEU LEU B . n B 1 31 LYS 31 27 27 LYS LYS B . n B 1 32 ASN 32 28 28 ASN ASN B . n B 1 33 ARG 33 29 29 ARG ARG B . n B 1 34 LEU 34 30 30 LEU LEU B . n B 1 35 ILE 35 31 31 ILE ILE B . n B 1 36 SER 36 32 32 SER SER B . n B 1 37 ALA 37 33 33 ALA ALA B . n B 1 38 LYS 38 34 34 LYS LYS B . n B 1 39 GLN 39 35 35 GLN GLN B . n B 1 40 GLN 40 36 36 GLN GLN B . n B 1 41 LEU 41 37 37 LEU LEU B . n B 1 42 GLN 42 38 38 GLN GLN B . n B 1 43 VAL 43 39 39 VAL VAL B . n B 1 44 GLN 44 40 40 GLN GLN B . n B 1 45 GLY 45 41 ? ? ? B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email lijch@scut.edu.cn _pdbx_contact_author.name_first Jianchao _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8921-1626 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 80 HOH HOH A . C 2 HOH 2 102 99 HOH HOH A . C 2 HOH 3 103 35 HOH HOH A . C 2 HOH 4 104 82 HOH HOH A . C 2 HOH 5 105 87 HOH HOH A . C 2 HOH 6 106 43 HOH HOH A . C 2 HOH 7 107 9 HOH HOH A . C 2 HOH 8 108 65 HOH HOH A . C 2 HOH 9 109 66 HOH HOH A . C 2 HOH 10 110 2 HOH HOH A . C 2 HOH 11 111 15 HOH HOH A . C 2 HOH 12 112 54 HOH HOH A . C 2 HOH 13 113 57 HOH HOH A . C 2 HOH 14 114 51 HOH HOH A . C 2 HOH 15 115 74 HOH HOH A . C 2 HOH 16 116 88 HOH HOH A . C 2 HOH 17 117 27 HOH HOH A . C 2 HOH 18 118 12 HOH HOH A . C 2 HOH 19 119 32 HOH HOH A . C 2 HOH 20 120 26 HOH HOH A . C 2 HOH 21 121 94 HOH HOH A . C 2 HOH 22 122 10 HOH HOH A . C 2 HOH 23 123 107 HOH HOH A . C 2 HOH 24 124 14 HOH HOH A . C 2 HOH 25 125 11 HOH HOH A . C 2 HOH 26 126 21 HOH HOH A . C 2 HOH 27 127 111 HOH HOH A . C 2 HOH 28 128 105 HOH HOH A . C 2 HOH 29 129 39 HOH HOH A . C 2 HOH 30 130 18 HOH HOH A . C 2 HOH 31 131 20 HOH HOH A . C 2 HOH 32 132 53 HOH HOH A . C 2 HOH 33 133 68 HOH HOH A . C 2 HOH 34 134 100 HOH HOH A . C 2 HOH 35 135 104 HOH HOH A . C 2 HOH 36 136 47 HOH HOH A . C 2 HOH 37 137 49 HOH HOH A . C 2 HOH 38 138 77 HOH HOH A . C 2 HOH 39 139 90 HOH HOH A . C 2 HOH 40 140 73 HOH HOH A . C 2 HOH 41 141 61 HOH HOH A . C 2 HOH 42 142 55 HOH HOH A . C 2 HOH 43 143 108 HOH HOH A . C 2 HOH 44 144 33 HOH HOH A . C 2 HOH 45 145 31 HOH HOH A . C 2 HOH 46 146 92 HOH HOH A . C 2 HOH 47 147 41 HOH HOH A . C 2 HOH 48 148 59 HOH HOH A . C 2 HOH 49 149 85 HOH HOH A . C 2 HOH 50 150 30 HOH HOH A . C 2 HOH 51 151 64 HOH HOH A . D 2 HOH 1 101 79 HOH HOH B . D 2 HOH 2 102 93 HOH HOH B . D 2 HOH 3 103 84 HOH HOH B . D 2 HOH 4 104 16 HOH HOH B . D 2 HOH 5 105 110 HOH HOH B . D 2 HOH 6 106 25 HOH HOH B . D 2 HOH 7 107 56 HOH HOH B . D 2 HOH 8 108 102 HOH HOH B . D 2 HOH 9 109 86 HOH HOH B . D 2 HOH 10 110 22 HOH HOH B . D 2 HOH 11 111 69 HOH HOH B . D 2 HOH 12 112 81 HOH HOH B . D 2 HOH 13 113 112 HOH HOH B . D 2 HOH 14 114 17 HOH HOH B . D 2 HOH 15 115 7 HOH HOH B . D 2 HOH 16 116 97 HOH HOH B . D 2 HOH 17 117 96 HOH HOH B . D 2 HOH 18 118 45 HOH HOH B . D 2 HOH 19 119 75 HOH HOH B . D 2 HOH 20 120 1 HOH HOH B . D 2 HOH 21 121 42 HOH HOH B . D 2 HOH 22 122 4 HOH HOH B . D 2 HOH 23 123 71 HOH HOH B . D 2 HOH 24 124 44 HOH HOH B . D 2 HOH 25 125 3 HOH HOH B . D 2 HOH 26 126 46 HOH HOH B . D 2 HOH 27 127 6 HOH HOH B . D 2 HOH 28 128 8 HOH HOH B . D 2 HOH 29 129 89 HOH HOH B . D 2 HOH 30 130 62 HOH HOH B . D 2 HOH 31 131 5 HOH HOH B . D 2 HOH 32 132 23 HOH HOH B . D 2 HOH 33 133 72 HOH HOH B . D 2 HOH 34 134 78 HOH HOH B . D 2 HOH 35 135 95 HOH HOH B . D 2 HOH 36 136 98 HOH HOH B . D 2 HOH 37 137 48 HOH HOH B . D 2 HOH 38 138 38 HOH HOH B . D 2 HOH 39 139 36 HOH HOH B . D 2 HOH 40 140 101 HOH HOH B . D 2 HOH 41 141 28 HOH HOH B . D 2 HOH 42 142 50 HOH HOH B . D 2 HOH 43 143 34 HOH HOH B . D 2 HOH 44 144 63 HOH HOH B . D 2 HOH 45 145 58 HOH HOH B . D 2 HOH 46 146 91 HOH HOH B . D 2 HOH 47 147 67 HOH HOH B . D 2 HOH 48 148 37 HOH HOH B . D 2 HOH 49 149 109 HOH HOH B . D 2 HOH 50 150 83 HOH HOH B . D 2 HOH 51 151 29 HOH HOH B . D 2 HOH 52 152 52 HOH HOH B . D 2 HOH 53 153 40 HOH HOH B . D 2 HOH 54 154 103 HOH HOH B . D 2 HOH 55 155 60 HOH HOH B . D 2 HOH 56 156 76 HOH HOH B . D 2 HOH 57 157 106 HOH HOH B . D 2 HOH 58 158 13 HOH HOH B . D 2 HOH 59 159 70 HOH HOH B . D 2 HOH 60 160 19 HOH HOH B . D 2 HOH 61 161 24 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1290 ? 1 MORE -13 ? 1 'SSA (A^2)' 7820 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-05-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -29.1685 -6.5514 16.8905 0.2637 ? 0.0070 ? 0.0053 ? 0.3555 ? -0.0590 ? 0.3154 ? 8.3021 ? -4.5735 ? -5.2065 ? 4.1005 ? 3.6172 ? 3.9360 ? -0.8194 ? -0.0606 ? -0.9059 ? 0.2048 ? -0.0197 ? 1.0203 ? 0.0417 ? -1.0668 ? 0.6781 ? 2 'X-RAY DIFFRACTION' ? refined 1.9313 0.0710 10.0186 0.1690 ? -0.0118 ? 0.0064 ? 0.1313 ? -0.0161 ? 0.1711 ? 5.1319 ? 2.7982 ? -1.4913 ? 0.6853 ? -1.0110 ? 0.6787 ? 0.0269 ? 0.1313 ? 0.2864 ? 0.0382 ? 0.0095 ? 0.1484 ? -0.0598 ? 0.0158 ? -0.0989 ? 3 'X-RAY DIFFRACTION' ? refined -20.5766 -22.9543 7.0527 0.4809 ? -0.0082 ? 0.0500 ? 0.2191 ? 0.0468 ? 0.2865 ? 7.9159 ? 1.6345 ? -1.1135 ? 2.3307 ? 1.1548 ? 1.8863 ? -0.4267 ? -0.2500 ? -0.9694 ? -0.0022 ? 0.3897 ? -0.3286 ? 1.2557 ? -0.0376 ? -0.0078 ? 4 'X-RAY DIFFRACTION' ? refined 5.1432 -9.1074 8.3662 0.1877 ? -0.0393 ? -0.0005 ? 0.1444 ? -0.0246 ? 0.1547 ? 6.2851 ? 2.6632 ? 1.6626 ? 0.5631 ? 0.6252 ? 0.6423 ? -0.1081 ? 0.1891 ? -0.3152 ? -0.0402 ? 0.0878 ? -0.0825 ? 0.0387 ? -0.0207 ? -0.0051 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A -3 ? ? ? A 2 ? ? ;chain 'A' and (resid -3 through 2 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 3 ? ? ? A 40 ? ? ;chain 'A' and (resid 3 through 40 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? B -3 ? ? ? B 2 ? ? ;chain 'B' and (resid -3 through 2 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? B 3 ? ? ? B 40 ? ? ;chain 'B' and (resid 3 through 40 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DENZO ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALEPACK ? ? ? . 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? Arcimboldo ? ? ? . 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 136 ? ? O A HOH 147 ? ? 2.01 2 1 O B PRO -2 ? ? O B HOH 101 ? ? 2.02 3 1 OE2 B GLU 7 ? ? O B HOH 102 ? ? 2.08 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 133 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 121 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_556 _pdbx_validate_symm_contact.dist 2.14 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 40 ? CG ? A GLN 44 CG 2 1 Y 1 A GLN 40 ? CD ? A GLN 44 CD 3 1 Y 1 A GLN 40 ? OE1 ? A GLN 44 OE1 4 1 Y 1 A GLN 40 ? NE2 ? A GLN 44 NE2 5 1 Y 1 B GLN 40 ? CG ? B GLN 44 CG 6 1 Y 1 B GLN 40 ? CD ? B GLN 44 CD 7 1 Y 1 B GLN 40 ? OE1 ? B GLN 44 OE1 8 1 Y 1 B GLN 40 ? NE2 ? B GLN 44 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 41 ? A GLY 45 2 1 Y 1 B GLY 41 ? B GLY 45 # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'light scattering' _pdbx_struct_assembly_auth_evidence.details ? #