HEADER IMMUNE SYSTEM 11-JUL-22 7YGG TITLE CRYSTAL STRUCTURE OF HUMAN CD47 IN COMPLEX WITH ENGINEERED TITLE 2 SIRPA.D1(N80A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIRPA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE SEQUENCE HAS BEEN DEPOSITED TO GENBANK WITH COMPND 6 ACCESSION NUMBER AAH26692.1. RESIDUE N80A REPRESENTS MUTATION.; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LEUKOCYTE SURFACE ANTIGEN CD47; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: ANTIGENIC SURFACE DETERMINANT PROTEIN OA3,INTEGRIN- COMPND 11 ASSOCIATED PROTEIN,IAP,PROTEIN MER6; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRPA; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: EUKARYOTIC EXPRESSION VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTT5-SP-CD47-HIS; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CD47, MER6; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: EXPI293F; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: EUKARYOTIC EXPRESSION VECTOR; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PTT5-SP-CD47-HIS KEYWDS SIRPA-FC FUSION PROTEIN, IMM01, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.YU,W.TIAN REVDAT 2 29-NOV-23 7YGG 1 REMARK REVDAT 1 19-OCT-22 7YGG 0 JRNL AUTH J.YU,S.LI,D.CHEN,D.LIU,H.GUO,C.YANG,W.ZHANG,L.ZHANG,G.ZHAO, JRNL AUTH 2 X.TU,L.PENG,S.LIU,X.BAI,Y.SONG,Z.JIANG,R.ZHANG,W.TIAN JRNL TITL CRYSTAL STRUCTURE OF HUMAN CD47 IN COMPLEX WITH ENGINEERED JRNL TITL 2 SIRP ALPHA.D1(N80A). JRNL REF MOLECULES V. 27 2022 JRNL REFN ESSN 1420-3049 JRNL PMID 36080360 JRNL DOI 10.3390/MOLECULES27175574 REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 964 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1361 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.97000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : 3.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.642 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.336 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.273 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.921 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3771 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3545 ; 0.003 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5112 ; 1.214 ; 1.677 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8227 ; 1.074 ; 1.597 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 7.189 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;31.904 ;22.874 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 648 ;14.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.034 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4182 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 806 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 24 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 11 REMARK 3 ORIGIN FOR THE GROUP (A): 44.2070 13.2700 9.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.0365 T22: 0.1794 REMARK 3 T33: 0.2280 T12: 0.0212 REMARK 3 T13: 0.0381 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.6344 L22: 7.0912 REMARK 3 L33: 10.1841 L12: 2.8590 REMARK 3 L13: -3.9042 L23: -7.0330 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.2381 S13: -0.2621 REMARK 3 S21: 0.0671 S22: -0.2833 S23: -0.2181 REMARK 3 S31: -0.0923 S32: 0.5144 S33: 0.3015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4760 16.9390 0.3000 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.2725 REMARK 3 T33: 0.1837 T12: 0.0181 REMARK 3 T13: -0.0069 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.3240 L22: 2.0297 REMARK 3 L33: 0.7541 L12: 0.3720 REMARK 3 L13: 0.2471 L23: -0.6451 REMARK 3 S TENSOR REMARK 3 S11: -0.1259 S12: -0.0674 S13: 0.0631 REMARK 3 S21: -0.0278 S22: -0.0231 S23: -0.0151 REMARK 3 S31: -0.1596 S32: -0.0214 S33: 0.1490 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3260 7.7330 -2.0080 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.2785 REMARK 3 T33: 0.1407 T12: -0.0978 REMARK 3 T13: 0.0557 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 1.4066 L22: 5.6649 REMARK 3 L33: 3.5311 L12: 2.1877 REMARK 3 L13: 1.0262 L23: -0.7294 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: 0.1433 S13: -0.0666 REMARK 3 S21: -0.4142 S22: 0.0731 S23: -0.0924 REMARK 3 S31: 0.3060 S32: -0.0297 S33: 0.0434 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 34.1850 18.7060 2.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: 0.2277 REMARK 3 T33: 0.1462 T12: -0.0454 REMARK 3 T13: -0.0394 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 2.0036 L22: 2.1869 REMARK 3 L33: 1.2115 L12: -0.0045 REMARK 3 L13: -1.3613 L23: -0.7641 REMARK 3 S TENSOR REMARK 3 S11: -0.1094 S12: -0.0463 S13: -0.0062 REMARK 3 S21: 0.0662 S22: 0.1184 S23: -0.0972 REMARK 3 S31: 0.0685 S32: -0.0186 S33: -0.0090 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7530 24.5250 -12.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.1301 REMARK 3 T33: 0.0995 T12: 0.0192 REMARK 3 T13: -0.0077 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 2.7401 L22: 4.5579 REMARK 3 L33: 13.4907 L12: 0.9315 REMARK 3 L13: -2.7856 L23: -4.8179 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.1353 S13: -0.1135 REMARK 3 S21: -0.2040 S22: -0.2296 S23: -0.2705 REMARK 3 S31: -0.2840 S32: 0.4656 S33: 0.2956 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 20.8910 39.1050 35.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.1798 T22: 0.1062 REMARK 3 T33: 0.1130 T12: -0.0491 REMARK 3 T13: -0.0868 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 2.6035 L22: 0.1972 REMARK 3 L33: 20.5195 L12: -0.4435 REMARK 3 L13: 4.6303 L23: 0.3997 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: 0.3212 S13: 0.1400 REMARK 3 S21: 0.0063 S22: -0.0845 S23: -0.0195 REMARK 3 S31: -0.5545 S32: 0.4753 S33: 0.2477 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 50 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5490 30.4330 44.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.1524 T22: 0.2031 REMARK 3 T33: 0.2811 T12: -0.1176 REMARK 3 T13: -0.1285 T23: 0.0932 REMARK 3 L TENSOR REMARK 3 L11: 0.7572 L22: 1.8624 REMARK 3 L33: 5.2199 L12: 0.7141 REMARK 3 L13: 1.7817 L23: 1.9927 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: 0.0512 S13: 0.2245 REMARK 3 S21: 0.1548 S22: -0.3370 S23: -0.2101 REMARK 3 S31: 0.1217 S32: -0.1430 S33: 0.4342 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 51 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5170 23.0900 48.9910 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.1964 REMARK 3 T33: 0.1641 T12: -0.1329 REMARK 3 T13: -0.0328 T23: 0.1073 REMARK 3 L TENSOR REMARK 3 L11: 3.3681 L22: 1.7553 REMARK 3 L33: 10.1593 L12: 0.9412 REMARK 3 L13: 4.6856 L23: 0.7422 REMARK 3 S TENSOR REMARK 3 S11: 0.4539 S12: -0.6346 S13: -0.4585 REMARK 3 S21: 0.3004 S22: -0.3654 S23: -0.1968 REMARK 3 S31: 0.5373 S32: -0.5887 S33: -0.0885 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3470 33.8240 40.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.4433 T22: 0.2118 REMARK 3 T33: 0.2563 T12: 0.1748 REMARK 3 T13: 0.1128 T23: -0.0744 REMARK 3 L TENSOR REMARK 3 L11: 2.8695 L22: 2.0144 REMARK 3 L33: 3.0687 L12: -0.4394 REMARK 3 L13: -2.9434 L23: 0.5559 REMARK 3 S TENSOR REMARK 3 S11: 0.5975 S12: 0.3109 S13: 0.4218 REMARK 3 S21: 0.5167 S22: -0.1582 S23: 0.2692 REMARK 3 S31: -0.6294 S32: -0.3666 S33: -0.4393 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 95 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4360 29.2940 47.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.1050 T22: 0.0245 REMARK 3 T33: 0.1392 T12: 0.0122 REMARK 3 T13: -0.0902 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.6861 L22: 3.2559 REMARK 3 L33: 6.5508 L12: -0.0218 REMARK 3 L13: 2.4438 L23: 1.1478 REMARK 3 S TENSOR REMARK 3 S11: -0.2689 S12: 0.1050 S13: 0.4530 REMARK 3 S21: 0.0565 S22: -0.0673 S23: -0.0829 REMARK 3 S31: -0.6132 S32: 0.1011 S33: 0.3362 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 116 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1280 29.9790 44.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.1168 T22: 0.2065 REMARK 3 T33: 0.2323 T12: -0.0369 REMARK 3 T13: -0.0722 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 0.7810 L22: 1.2573 REMARK 3 L33: 6.8911 L12: 0.9106 REMARK 3 L13: 2.1905 L23: 2.9319 REMARK 3 S TENSOR REMARK 3 S11: 0.0583 S12: 0.1651 S13: 0.0266 REMARK 3 S21: 0.1968 S22: 0.0582 S23: -0.0555 REMARK 3 S31: 0.3970 S32: 0.1946 S33: -0.1165 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7700 1.6190 -2.7630 REMARK 3 T TENSOR REMARK 3 T11: 0.2315 T22: 0.3373 REMARK 3 T33: 0.1895 T12: 0.0915 REMARK 3 T13: 0.0743 T23: 0.0957 REMARK 3 L TENSOR REMARK 3 L11: 15.8843 L22: 1.7158 REMARK 3 L33: 2.8449 L12: 3.1579 REMARK 3 L13: 6.0819 L23: 1.7478 REMARK 3 S TENSOR REMARK 3 S11: 0.3174 S12: 0.9025 S13: 0.4119 REMARK 3 S21: -0.0717 S22: -0.2722 S23: -0.2729 REMARK 3 S31: 0.2638 S32: 0.2019 S33: -0.0451 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 21 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4650 1.3110 3.7280 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0680 REMARK 3 T33: 0.2436 T12: -0.0250 REMARK 3 T13: 0.0085 T23: -0.0599 REMARK 3 L TENSOR REMARK 3 L11: 6.9024 L22: 0.1545 REMARK 3 L33: 9.2774 L12: 0.9157 REMARK 3 L13: 2.0772 L23: 0.0978 REMARK 3 S TENSOR REMARK 3 S11: 0.1860 S12: -0.1182 S13: -0.1162 REMARK 3 S21: 0.0233 S22: -0.0311 S23: 0.0698 REMARK 3 S31: 0.1352 S32: -0.0105 S33: -0.1550 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 22 C 32 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2520 -3.0660 6.1620 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.2144 REMARK 3 T33: 0.9095 T12: -0.0274 REMARK 3 T13: 0.1025 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 2.1331 L22: 0.9247 REMARK 3 L33: 0.0924 L12: 0.4103 REMARK 3 L13: -0.2714 L23: 0.1457 REMARK 3 S TENSOR REMARK 3 S11: -0.1335 S12: -0.0503 S13: -1.3547 REMARK 3 S21: 0.1390 S22: -0.0553 S23: -0.1081 REMARK 3 S31: 0.0604 S32: -0.0105 S33: 0.1888 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 33 C 63 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7540 9.3830 13.3660 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.3107 REMARK 3 T33: 0.1623 T12: -0.0070 REMARK 3 T13: -0.0403 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.2955 L22: 3.0241 REMARK 3 L33: 0.1611 L12: -0.3227 REMARK 3 L13: -0.4043 L23: 0.2474 REMARK 3 S TENSOR REMARK 3 S11: -0.2332 S12: 0.1205 S13: 0.0394 REMARK 3 S21: 0.4716 S22: 0.1799 S23: -0.0168 REMARK 3 S31: 0.0813 S32: 0.0009 S33: 0.0532 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 64 C 79 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6670 -1.7090 12.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1586 REMARK 3 T33: 0.1181 T12: -0.0412 REMARK 3 T13: 0.0452 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.1104 L22: 8.0024 REMARK 3 L33: 0.4617 L12: -4.6264 REMARK 3 L13: 0.6937 L23: -0.4463 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: -0.1990 S13: -0.1665 REMARK 3 S21: 0.6284 S22: 0.1355 S23: 0.2679 REMARK 3 S31: 0.2124 S32: -0.1347 S33: -0.0180 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 80 C 90 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7390 6.2100 9.1590 REMARK 3 T TENSOR REMARK 3 T11: 0.0367 T22: 0.1322 REMARK 3 T33: 0.0950 T12: -0.0471 REMARK 3 T13: 0.0337 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 6.0895 L22: 4.9801 REMARK 3 L33: 8.7246 L12: -4.1014 REMARK 3 L13: 3.2270 L23: -0.2739 REMARK 3 S TENSOR REMARK 3 S11: -0.0987 S12: -0.3182 S13: -0.0498 REMARK 3 S21: 0.1684 S22: -0.0104 S23: 0.0744 REMARK 3 S31: 0.2650 S32: -0.6719 S33: 0.1092 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 91 C 116 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7330 6.2110 1.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.0333 T22: 0.2563 REMARK 3 T33: 0.1648 T12: -0.0216 REMARK 3 T13: 0.0292 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 9.9202 L22: 0.5798 REMARK 3 L33: 0.2212 L12: -2.3683 REMARK 3 L13: 1.1799 L23: -0.2496 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: 0.0579 S13: -0.0736 REMARK 3 S21: 0.0285 S22: -0.0460 S23: 0.0450 REMARK 3 S31: 0.0412 S32: -0.0348 S33: 0.0812 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 8 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8520 16.3670 42.9900 REMARK 3 T TENSOR REMARK 3 T11: 0.3568 T22: 0.2296 REMARK 3 T33: 0.1262 T12: 0.0063 REMARK 3 T13: -0.0387 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 1.2738 L22: 9.8883 REMARK 3 L33: 4.4039 L12: -1.1312 REMARK 3 L13: -0.1800 L23: -6.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.1914 S12: -0.1441 S13: 0.3835 REMARK 3 S21: 1.5040 S22: 0.3599 S23: -0.1774 REMARK 3 S31: -0.8789 S32: -0.1667 S33: -0.1685 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 9 D 42 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0330 11.3020 32.8540 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.3291 REMARK 3 T33: 0.1393 T12: 0.0010 REMARK 3 T13: 0.0071 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.8877 L22: 4.6631 REMARK 3 L33: 0.5201 L12: -0.6403 REMARK 3 L13: -0.4426 L23: 1.3529 REMARK 3 S TENSOR REMARK 3 S11: -0.1314 S12: -0.2651 S13: 0.1940 REMARK 3 S21: 0.1163 S22: 0.0951 S23: 0.3554 REMARK 3 S31: 0.1019 S32: 0.0120 S33: 0.0363 REMARK 3 REMARK 3 TLS GROUP : 21 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 43 D 58 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8200 12.1730 26.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.1937 REMARK 3 T33: 0.1166 T12: 0.0522 REMARK 3 T13: 0.0416 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.8215 L22: 7.7361 REMARK 3 L33: 9.8537 L12: -0.7022 REMARK 3 L13: 2.6045 L23: -5.5940 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0009 S13: -0.0112 REMARK 3 S21: -0.0200 S22: -0.0609 S23: -0.1175 REMARK 3 S31: 0.0600 S32: 0.0157 S33: 0.0467 REMARK 3 REMARK 3 TLS GROUP : 22 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 59 D 79 REMARK 3 ORIGIN FOR THE GROUP (A): 3.1010 11.0800 26.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.0551 T22: 0.2340 REMARK 3 T33: 0.1214 T12: -0.0528 REMARK 3 T13: 0.0643 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 5.0415 L22: 6.0603 REMARK 3 L33: 2.0593 L12: -4.7523 REMARK 3 L13: 0.0585 L23: 1.6236 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.1076 S13: -0.1817 REMARK 3 S21: 0.0994 S22: -0.2649 S23: 0.2968 REMARK 3 S31: 0.2277 S32: -0.2926 S33: 0.2565 REMARK 3 REMARK 3 TLS GROUP : 23 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 80 D 102 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0430 7.0080 32.7120 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.1903 REMARK 3 T33: 0.0835 T12: -0.0022 REMARK 3 T13: 0.0610 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.4454 L22: 7.2570 REMARK 3 L33: 1.4380 L12: 1.5622 REMARK 3 L13: 0.3603 L23: 0.4207 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: -0.1372 S13: 0.0204 REMARK 3 S21: 0.2565 S22: -0.0579 S23: 0.3213 REMARK 3 S31: 0.0985 S32: -0.2903 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 24 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 103 D 116 REMARK 3 ORIGIN FOR THE GROUP (A): 3.0210 4.5620 40.0600 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.2414 REMARK 3 T33: 0.0793 T12: -0.0842 REMARK 3 T13: 0.0868 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 1.0106 L22: 9.8355 REMARK 3 L33: 0.8885 L12: 1.3519 REMARK 3 L13: 0.3471 L23: -2.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.3452 S12: -0.3471 S13: 0.1108 REMARK 3 S21: 0.8085 S22: -0.2836 S23: 0.4418 REMARK 3 S31: 0.0090 S32: -0.1839 S33: -0.0616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7YGG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.10.2022 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 47.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.28800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 1.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 5TZ2, 2JJS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M TRIS PH REMARK 280 8.5, 30% W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.79000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 118 REMARK 465 ALA A 119 REMARK 465 PRO A 120 REMARK 465 VAL A 121 REMARK 465 VAL A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 PRO A 125 REMARK 465 ALA A 126 REMARK 465 ALA A 127 REMARK 465 ARG A 128 REMARK 465 ALA A 129 REMARK 465 THR A 130 REMARK 465 PRO A 131 REMARK 465 GLN A 132 REMARK 465 HIS A 133 REMARK 465 GLU A 134 REMARK 465 PRO A 135 REMARK 465 LYS A 136 REMARK 465 SER A 137 REMARK 465 CYS A 138 REMARK 465 ASP A 139 REMARK 465 LYS A 140 REMARK 465 THR A 141 REMARK 465 HIS A 142 REMARK 465 PRO B 117 REMARK 465 SER B 118 REMARK 465 ALA B 119 REMARK 465 PRO B 120 REMARK 465 VAL B 121 REMARK 465 VAL B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 PRO B 125 REMARK 465 ALA B 126 REMARK 465 ALA B 127 REMARK 465 ARG B 128 REMARK 465 ALA B 129 REMARK 465 THR B 130 REMARK 465 PRO B 131 REMARK 465 GLN B 132 REMARK 465 HIS B 133 REMARK 465 GLU B 134 REMARK 465 PRO B 135 REMARK 465 LYS B 136 REMARK 465 SER B 137 REMARK 465 CYS B 138 REMARK 465 ASP B 139 REMARK 465 LYS B 140 REMARK 465 THR B 141 REMARK 465 HIS B 142 REMARK 465 SER C 117 REMARK 465 THR C 118 REMARK 465 ARG C 119 REMARK 465 HIS C 120 REMARK 465 HIS C 121 REMARK 465 HIS C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 HIS C 125 REMARK 465 SER D 117 REMARK 465 THR D 118 REMARK 465 ARG D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 465 HIS D 122 REMARK 465 HIS D 123 REMARK 465 HIS D 124 REMARK 465 HIS D 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR C 13 -165.04 -112.45 REMARK 500 LEU C 101 -102.74 54.60 REMARK 500 ASN D 16 94.95 -69.59 REMARK 500 ASN D 32 129.27 -174.12 REMARK 500 LEU D 101 -107.38 50.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 342 DISTANCE = 6.27 ANGSTROMS DBREF 7YGG A 1 142 PDB 7YGG 7YGG 1 142 DBREF 7YGG B 1 142 PDB 7YGG 7YGG 1 142 DBREF 7YGG C 1 117 UNP Q08722 CD47_HUMAN 19 135 DBREF 7YGG D 1 117 UNP Q08722 CD47_HUMAN 19 135 SEQADV 7YGG GLY C 15 UNP Q08722 CYS 33 CONFLICT SEQADV 7YGG THR C 118 UNP Q08722 EXPRESSION TAG SEQADV 7YGG ARG C 119 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS C 120 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS C 121 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS C 122 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS C 123 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS C 124 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS C 125 UNP Q08722 EXPRESSION TAG SEQADV 7YGG GLY D 15 UNP Q08722 CYS 33 CONFLICT SEQADV 7YGG THR D 118 UNP Q08722 EXPRESSION TAG SEQADV 7YGG ARG D 119 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS D 120 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS D 121 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS D 122 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS D 123 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS D 124 UNP Q08722 EXPRESSION TAG SEQADV 7YGG HIS D 125 UNP Q08722 EXPRESSION TAG SEQRES 1 A 142 GLU GLU GLU LEU GLN VAL ILE GLN PRO ASP LYS SER VAL SEQRES 2 A 142 SER VAL ALA ALA GLY GLU SER ALA ILE LEU HIS CYS THR SEQRES 3 A 142 VAL THR SER LEU ILE PRO VAL GLY PRO ILE GLN TRP PHE SEQRES 4 A 142 ARG GLY ALA GLY PRO ALA ARG GLU LEU ILE TYR ASN GLN SEQRES 5 A 142 LYS GLU GLY HIS PHE PRO ARG VAL THR THR VAL SER GLU SEQRES 6 A 142 SER THR LYS ARG GLU ASN MET ASP PHE SER ILE SER ILE SEQRES 7 A 142 SER ALA ILE THR PRO ALA ASP ALA GLY THR TYR TYR CYS SEQRES 8 A 142 VAL LYS PHE ARG LYS GLY SER PRO ASP THR GLU PHE LYS SEQRES 9 A 142 SER GLY ALA GLY THR GLU LEU SER VAL ARG ALA LYS PRO SEQRES 10 A 142 SER ALA PRO VAL VAL SER GLY PRO ALA ALA ARG ALA THR SEQRES 11 A 142 PRO GLN HIS GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 B 142 GLU GLU GLU LEU GLN VAL ILE GLN PRO ASP LYS SER VAL SEQRES 2 B 142 SER VAL ALA ALA GLY GLU SER ALA ILE LEU HIS CYS THR SEQRES 3 B 142 VAL THR SER LEU ILE PRO VAL GLY PRO ILE GLN TRP PHE SEQRES 4 B 142 ARG GLY ALA GLY PRO ALA ARG GLU LEU ILE TYR ASN GLN SEQRES 5 B 142 LYS GLU GLY HIS PHE PRO ARG VAL THR THR VAL SER GLU SEQRES 6 B 142 SER THR LYS ARG GLU ASN MET ASP PHE SER ILE SER ILE SEQRES 7 B 142 SER ALA ILE THR PRO ALA ASP ALA GLY THR TYR TYR CYS SEQRES 8 B 142 VAL LYS PHE ARG LYS GLY SER PRO ASP THR GLU PHE LYS SEQRES 9 B 142 SER GLY ALA GLY THR GLU LEU SER VAL ARG ALA LYS PRO SEQRES 10 B 142 SER ALA PRO VAL VAL SER GLY PRO ALA ALA ARG ALA THR SEQRES 11 B 142 PRO GLN HIS GLU PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 C 125 PCA LEU LEU PHE ASN LYS THR LYS SER VAL GLU PHE THR SEQRES 2 C 125 PHE GLY ASN ASP THR VAL VAL ILE PRO CYS PHE VAL THR SEQRES 3 C 125 ASN MET GLU ALA GLN ASN THR THR GLU VAL TYR VAL LYS SEQRES 4 C 125 TRP LYS PHE LYS GLY ARG ASP ILE TYR THR PHE ASP GLY SEQRES 5 C 125 ALA LEU ASN LYS SER THR VAL PRO THR ASP PHE SER SER SEQRES 6 C 125 ALA LYS ILE GLU VAL SER GLN LEU LEU LYS GLY ASP ALA SEQRES 7 C 125 SER LEU LYS MET ASP LYS SER ASP ALA VAL SER HIS THR SEQRES 8 C 125 GLY ASN TYR THR CYS GLU VAL THR GLU LEU THR ARG GLU SEQRES 9 C 125 GLY GLU THR ILE ILE GLU LEU LYS TYR ARG VAL VAL SER SEQRES 10 C 125 THR ARG HIS HIS HIS HIS HIS HIS SEQRES 1 D 125 PCA LEU LEU PHE ASN LYS THR LYS SER VAL GLU PHE THR SEQRES 2 D 125 PHE GLY ASN ASP THR VAL VAL ILE PRO CYS PHE VAL THR SEQRES 3 D 125 ASN MET GLU ALA GLN ASN THR THR GLU VAL TYR VAL LYS SEQRES 4 D 125 TRP LYS PHE LYS GLY ARG ASP ILE TYR THR PHE ASP GLY SEQRES 5 D 125 ALA LEU ASN LYS SER THR VAL PRO THR ASP PHE SER SER SEQRES 6 D 125 ALA LYS ILE GLU VAL SER GLN LEU LEU LYS GLY ASP ALA SEQRES 7 D 125 SER LEU LYS MET ASP LYS SER ASP ALA VAL SER HIS THR SEQRES 8 D 125 GLY ASN TYR THR CYS GLU VAL THR GLU LEU THR ARG GLU SEQRES 9 D 125 GLY GLU THR ILE ILE GLU LEU LYS TYR ARG VAL VAL SER SEQRES 10 D 125 THR ARG HIS HIS HIS HIS HIS HIS MODRES 7YGG PCA C 1 GLN MODIFIED RESIDUE MODRES 7YGG PCA D 1 GLN MODIFIED RESIDUE HET PCA C 1 8 HET PCA D 1 8 HET EDO A 201 4 HET NAG C 201 14 HET NAG C 202 14 HET EDO C 203 4 HET NAG D 201 14 HET NAG D 202 14 HET EDO D 203 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 PCA 2(C5 H7 N O3) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 6 NAG 4(C8 H15 N O6) FORMUL 12 HOH *144(H2 O) HELIX 1 AA1 THR A 82 ALA A 86 5 5 HELIX 2 AA2 THR B 82 ALA B 86 5 5 HELIX 3 AA3 ASN C 32 THR C 34 5 3 HELIX 4 AA4 ASP C 62 SER C 64 5 3 HELIX 5 AA5 GLU C 69 LEU C 73 5 5 HELIX 6 AA6 LYS C 84 HIS C 90 1 7 HELIX 7 AA7 ASN D 32 THR D 34 5 3 HELIX 8 AA8 ASP D 62 SER D 64 5 3 HELIX 9 AA9 VAL D 70 GLY D 76 5 7 HELIX 10 AB1 LYS D 84 HIS D 90 1 7 SHEET 1 AA1 2 VAL A 6 ILE A 7 0 SHEET 2 AA1 2 THR A 26 VAL A 27 -1 O THR A 26 N ILE A 7 SHEET 1 AA2 5 SER A 12 ALA A 16 0 SHEET 2 AA2 5 THR A 109 ARG A 114 1 O ARG A 114 N VAL A 15 SHEET 3 AA2 5 GLY A 87 ARG A 95 -1 N TYR A 89 O THR A 109 SHEET 4 AA2 5 ILE A 36 ARG A 40 -1 N PHE A 39 O TYR A 90 SHEET 5 AA2 5 GLU A 47 TYR A 50 -1 O ILE A 49 N TRP A 38 SHEET 1 AA3 4 SER A 12 ALA A 16 0 SHEET 2 AA3 4 THR A 109 ARG A 114 1 O ARG A 114 N VAL A 15 SHEET 3 AA3 4 GLY A 87 ARG A 95 -1 N TYR A 89 O THR A 109 SHEET 4 AA3 4 THR A 101 SER A 105 -1 O LYS A 104 N LYS A 93 SHEET 1 AA4 3 ALA A 21 LEU A 23 0 SHEET 2 AA4 3 ILE A 76 ILE A 78 -1 O ILE A 76 N LEU A 23 SHEET 3 AA4 3 VAL A 60 THR A 62 -1 N THR A 61 O SER A 77 SHEET 1 AA5 2 VAL B 6 ILE B 7 0 SHEET 2 AA5 2 THR B 26 VAL B 27 -1 O THR B 26 N ILE B 7 SHEET 1 AA6 5 SER B 12 ALA B 16 0 SHEET 2 AA6 5 THR B 109 ARG B 114 1 O SER B 112 N VAL B 13 SHEET 3 AA6 5 GLY B 87 ARG B 95 -1 N GLY B 87 O LEU B 111 SHEET 4 AA6 5 ILE B 36 ARG B 40 -1 N PHE B 39 O TYR B 90 SHEET 5 AA6 5 GLU B 47 TYR B 50 -1 O ILE B 49 N TRP B 38 SHEET 1 AA7 4 SER B 12 ALA B 16 0 SHEET 2 AA7 4 THR B 109 ARG B 114 1 O SER B 112 N VAL B 13 SHEET 3 AA7 4 GLY B 87 ARG B 95 -1 N GLY B 87 O LEU B 111 SHEET 4 AA7 4 THR B 101 SER B 105 -1 O LYS B 104 N LYS B 93 SHEET 1 AA8 3 ALA B 21 LEU B 23 0 SHEET 2 AA8 3 ILE B 76 ILE B 78 -1 O ILE B 76 N LEU B 23 SHEET 3 AA8 3 VAL B 60 THR B 62 -1 N THR B 61 O SER B 77 SHEET 1 AA912 SER C 9 PHE C 12 0 SHEET 2 AA912 ARG C 103 TYR C 113 1 O LYS C 112 N VAL C 10 SHEET 3 AA912 GLY C 92 GLU C 100 -1 N GLY C 92 O LEU C 111 SHEET 4 AA912 VAL C 36 PHE C 42 -1 N LYS C 39 O GLU C 97 SHEET 5 AA912 ARG C 45 ASP C 51 -1 O TYR C 48 N TRP C 40 SHEET 6 AA912 LYS C 56 PRO C 60 -1 O LYS C 56 N ASP C 51 SHEET 7 AA912 LYS D 56 PRO D 60 -1 O VAL D 59 N SER C 57 SHEET 8 AA912 ARG D 45 ASP D 51 -1 N ASP D 51 O LYS D 56 SHEET 9 AA912 VAL D 36 PHE D 42 -1 N TRP D 40 O TYR D 48 SHEET 10 AA912 GLY D 92 GLU D 100 -1 O GLU D 97 N LYS D 39 SHEET 11 AA912 ARG D 103 TYR D 113 -1 O ILE D 109 N TYR D 94 SHEET 12 AA912 SER D 9 PHE D 12 1 N VAL D 10 O GLU D 110 SHEET 1 AB1 2 THR C 18 ILE C 21 0 SHEET 2 AB1 2 LEU C 80 ASP C 83 -1 O MET C 82 N VAL C 19 SHEET 1 AB2 3 THR D 18 ILE D 21 0 SHEET 2 AB2 3 LEU D 80 ASP D 83 -1 O MET D 82 N VAL D 19 SHEET 3 AB2 3 LYS D 67 ILE D 68 -1 N LYS D 67 O LYS D 81 SSBOND 1 CYS A 25 CYS A 91 1555 1555 2.05 SSBOND 2 CYS B 25 CYS B 91 1555 1555 2.04 SSBOND 3 CYS C 23 CYS C 96 1555 1555 2.04 SSBOND 4 CYS D 23 CYS D 96 1555 1555 2.06 LINK C PCA C 1 N LEU C 2 1555 1555 1.34 LINK ND2 ASN C 16 C1 NAG C 202 1555 1555 1.44 LINK ND2 ASN C 93 C1 NAG C 201 1555 1555 1.44 LINK C PCA D 1 N LEU D 2 1555 1555 1.34 LINK ND2 ASN D 16 C1 NAG D 201 1555 1555 1.45 LINK ND2 ASN D 93 C1 NAG D 202 1555 1555 1.45 CISPEP 1 ILE A 31 PRO A 32 0 4.03 CISPEP 2 SER A 98 PRO A 99 0 -3.96 CISPEP 3 ILE B 31 PRO B 32 0 1.18 CISPEP 4 SER B 98 PRO B 99 0 2.27 CRYST1 53.580 99.640 138.930 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007198 0.00000