HEADER HYDROLASE 12-JUL-22 7YH4 TITLE CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC BETA-ALANYL LYSINE DIPEPTIDASE TITLE 2 (PM20D2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-ARG DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-ALA-LYS DIPEPTIDASE; COMPND 5 EC: 3.4.13.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PM20D2, ACY1L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PST50STRN KEYWDS DIPEPTIDASE, CARNOSINE PROOFREADING, DNA REPAIR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.CHANDRAVANSHI,N.K.GAUR,A.KUMAR,R.D.MAKDE REVDAT 1 02-AUG-23 7YH4 0 JRNL AUTH K.CHANDRAVANSHI,N.K.GAUR,A.KUMAR,R.D.MAKDE JRNL TITL CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC BETA-ALANYL LYSINE JRNL TITL 2 DIPEPTIDASE (PM20D2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6200 - 4.7698 1.00 2781 134 0.1723 0.1879 REMARK 3 2 4.7698 - 3.7873 1.00 2670 138 0.1595 0.1922 REMARK 3 3 3.7873 - 3.3090 1.00 2612 159 0.1942 0.2434 REMARK 3 4 3.3090 - 3.0066 1.00 2635 139 0.2083 0.2954 REMARK 3 5 3.0066 - 2.7912 1.00 2602 130 0.2034 0.2324 REMARK 3 6 2.7912 - 2.6267 1.00 2595 141 0.2079 0.2373 REMARK 3 7 2.6267 - 2.4952 1.00 2609 135 0.1957 0.2395 REMARK 3 8 2.4952 - 2.3866 1.00 2612 143 0.2058 0.2545 REMARK 3 9 2.3866 - 2.2947 1.00 2579 139 0.2163 0.2734 REMARK 3 10 2.2947 - 2.2156 0.98 2546 136 0.3617 0.4515 REMARK 3 11 2.2156 - 2.1463 1.00 2562 143 0.2530 0.3548 REMARK 3 12 2.1463 - 2.0850 1.00 2597 139 0.2837 0.2810 REMARK 3 13 2.0850 - 2.0301 0.99 2600 107 0.3601 0.3497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3133 REMARK 3 ANGLE : 0.776 4281 REMARK 3 CHIRALITY : 0.049 464 REMARK 3 PLANARITY : 0.005 563 REMARK 3 DIHEDRAL : 10.622 1833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.6280 21.1855 28.8788 REMARK 3 T TENSOR REMARK 3 T11: 0.2210 T22: 0.3784 REMARK 3 T33: 0.3699 T12: -0.0165 REMARK 3 T13: -0.0013 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.7869 L22: 1.8445 REMARK 3 L33: 4.1977 L12: 0.3700 REMARK 3 L13: 0.7460 L23: 2.4899 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: -0.3352 S13: 0.0406 REMARK 3 S21: 0.1019 S22: 0.0193 S23: 0.0221 REMARK 3 S31: 0.0173 S32: -0.0575 S33: -0.0111 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YH4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 44.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 1.14000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RAM REMARK 200 REMARK 200 REMARK: HEXAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70 MM CALCIUM CHLORIDE, 35 MM SODIUM REMARK 280 ACETATE PH4.6, 7% ISOPROPANOL, 15% GLYCEROL, 20MM TRIS-CL, 200 REMARK 280 MM NACL (MIXED IN 1:1), MICROBATCH, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.41700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.44400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.60850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.41700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.44400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.60850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.41700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.44400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.60850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.41700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.44400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.60850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -377.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 683 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ALA A -16 REMARK 465 SER A -15 REMARK 465 TRP A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 PRO A -11 REMARK 465 GLN A -10 REMARK 465 PHE A -9 REMARK 465 GLU A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 ALA A 98 REMARK 465 PRO A 99 REMARK 465 SER A 100 REMARK 465 ALA A 101 REMARK 465 THR A 102 REMARK 465 SER A 340 REMARK 465 GLU A 341 REMARK 465 ASP A 342 REMARK 465 THR A 343 REMARK 465 MET A 344 REMARK 465 LEU A 345 REMARK 465 ASN A 346 REMARK 465 GLY A 347 REMARK 465 PRO A 348 REMARK 465 SER A 349 REMARK 465 GLU A 429 REMARK 465 GLN A 430 REMARK 465 PHE A 431 REMARK 465 VAL A 432 REMARK 465 ASN A 433 REMARK 465 ALA A 434 REMARK 465 VAL A 435 REMARK 465 GLU A 436 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CG CD1 CD2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 SER A 19 OG REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 147 CG CD1 CD2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 HIS A 216 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ILE A 264 CG1 CG2 CD1 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LEU A 424 CG CD1 CD2 REMARK 470 GLN A 427 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 15 32.47 -82.56 REMARK 500 GLN A 17 -73.57 -16.95 REMARK 500 GLN A 82 -35.38 71.56 REMARK 500 PRO A 94 90.59 -58.33 REMARK 500 TYR A 114 19.98 -162.77 REMARK 500 SER A 191 -140.36 -143.52 REMARK 500 GLN A 427 80.35 -69.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 GLU A 165 OE2 118.1 REMARK 620 3 HIS A 377 NE2 98.6 108.9 REMARK 620 4 HOH A 621 O 110.9 87.1 134.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 HIS A 126 NE2 90.9 REMARK 620 3 HIS A 189 NE2 86.9 113.9 REMARK 620 4 HOH A 604 O 168.4 83.9 85.8 REMARK 620 5 HOH A 621 O 90.1 110.0 136.1 101.4 REMARK 620 N 1 2 3 4 DBREF 7YH4 A 20 436 UNP Q8IYS1 P20D2_HUMAN 20 436 SEQADV 7YH4 MET A -17 UNP Q8IYS1 INITIATING METHIONINE SEQADV 7YH4 ALA A -16 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A -15 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 TRP A -14 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A -13 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A -12 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 PRO A -11 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLN A -10 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 PHE A -9 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLU A -8 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A -7 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A -6 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A -5 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A -4 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A -3 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A -2 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A -1 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A 0 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A 1 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 HIS A 2 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A 3 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A 4 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 5 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A 6 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 7 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 8 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 9 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 10 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 11 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLU A 12 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 ASN A 13 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 LEU A 14 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 TYR A 15 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 PHE A 16 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLN A 17 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 GLY A 18 UNP Q8IYS1 EXPRESSION TAG SEQADV 7YH4 SER A 19 UNP Q8IYS1 EXPRESSION TAG SEQRES 1 A 454 MET ALA SER TRP SER HIS PRO GLN PHE GLU GLY GLY SER SEQRES 2 A 454 SER HIS HIS HIS HIS HIS HIS SER SER GLY SER GLY GLY SEQRES 3 A 454 GLY GLY GLY GLU ASN LEU TYR PHE GLN GLY SER LEU GLU SEQRES 4 A 454 LEU LEU LYS LEU ARG SER ALA GLU CYS ILE ASP GLU ALA SEQRES 5 A 454 ALA GLU ARG LEU GLY ALA LEU SER ARG ALA ILE TRP SER SEQRES 6 A 454 GLN PRO GLU LEU ALA TYR GLU GLU HIS HIS ALA HIS ARG SEQRES 7 A 454 VAL LEU THR HIS PHE PHE GLU ARG GLU PRO PRO ALA ALA SEQRES 8 A 454 SER TRP ALA VAL GLN PRO HIS TYR GLN LEU PRO THR ALA SEQRES 9 A 454 PHE ARG ALA GLU TRP GLU PRO PRO GLU ALA ARG ALA PRO SEQRES 10 A 454 SER ALA THR PRO ARG PRO LEU HIS LEU GLY PHE LEU CYS SEQRES 11 A 454 GLU TYR ASP ALA LEU PRO GLY ILE GLY HIS ALA CYS GLY SEQRES 12 A 454 HIS ASN LEU ILE ALA GLU VAL GLY ALA ALA ALA ALA LEU SEQRES 13 A 454 GLY VAL ARG GLY ALA LEU GLU GLY LEU PRO ARG PRO PRO SEQRES 14 A 454 PRO PRO VAL LYS VAL VAL VAL LEU GLY THR PRO ALA GLU SEQRES 15 A 454 GLU ASP GLY GLY GLY LYS ILE ASP LEU ILE GLU ALA GLY SEQRES 16 A 454 ALA PHE THR ASN LEU ASP VAL VAL PHE MET ALA HIS PRO SEQRES 17 A 454 SER GLN GLU ASN ALA ALA TYR LEU PRO ASP MET ALA GLU SEQRES 18 A 454 HIS ASP VAL THR VAL LYS TYR TYR GLY LYS ALA SER HIS SEQRES 19 A 454 SER ALA SER TYR PRO TRP GLU GLY LEU ASN ALA LEU ASP SEQRES 20 A 454 ALA ALA VAL LEU ALA TYR ASN ASN LEU SER VAL PHE ARG SEQRES 21 A 454 GLN GLN MET LYS PRO THR TRP ARG VAL HIS GLY ILE ILE SEQRES 22 A 454 LYS ASN GLY GLY VAL LYS PRO ASN ILE ILE PRO SER TYR SEQRES 23 A 454 SER GLU LEU ILE TYR TYR PHE ARG ALA PRO SER MET LYS SEQRES 24 A 454 GLU LEU GLN VAL LEU THR LYS LYS ALA GLU ASP CYS PHE SEQRES 25 A 454 ARG ALA ALA ALA LEU ALA SER GLY CYS THR VAL GLU ILE SEQRES 26 A 454 LYS GLY GLY ALA HIS ASP TYR TYR ASN VAL LEU PRO ASN SEQRES 27 A 454 LYS SER LEU TRP LYS ALA TYR MET GLU ASN GLY ARG LYS SEQRES 28 A 454 LEU GLY ILE GLU PHE ILE SER GLU ASP THR MET LEU ASN SEQRES 29 A 454 GLY PRO SER GLY SER THR ASP PHE GLY ASN VAL SER PHE SEQRES 30 A 454 VAL VAL PRO GLY ILE HIS PRO TYR PHE HIS ILE GLY SER SEQRES 31 A 454 ASN ALA LEU ASN HIS THR GLU GLN TYR THR GLU ALA ALA SEQRES 32 A 454 GLY SER GLN GLU ALA GLN PHE TYR THR LEU ARG THR ALA SEQRES 33 A 454 LYS ALA LEU ALA MET THR ALA LEU ASP VAL ILE PHE LYS SEQRES 34 A 454 PRO GLU LEU LEU GLU GLY ILE ARG GLU ASP PHE LYS LEU SEQRES 35 A 454 LYS LEU GLN GLU GLU GLN PHE VAL ASN ALA VAL GLU HET ZN A 501 1 HET ZN A 502 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *95(H2 O) HELIX 1 AA1 SER A 19 ALA A 34 1 16 HELIX 2 AA2 ALA A 34 SER A 47 1 14 HELIX 3 AA3 GLU A 55 GLU A 69 1 15 HELIX 4 AA4 GLY A 125 GLY A 146 1 22 HELIX 5 AA5 GLY A 168 ALA A 176 1 9 HELIX 6 AA6 TYR A 220 GLY A 224 5 5 HELIX 7 AA7 ASN A 226 ARG A 242 1 17 HELIX 8 AA8 GLN A 243 MET A 245 5 3 HELIX 9 AA9 SER A 279 GLY A 302 1 24 HELIX 10 AB1 ASN A 320 GLY A 335 1 16 HELIX 11 AB2 ASP A 353 PHE A 359 1 7 HELIX 12 AB3 THR A 378 SER A 387 1 10 HELIX 13 AB4 GLN A 388 LYS A 411 1 24 HELIX 14 AB5 LYS A 411 GLN A 427 1 17 SHEET 1 AA1 6 ALA A 76 GLN A 78 0 SHEET 2 AA1 6 PHE A 87 TRP A 91 -1 O ARG A 88 N GLN A 78 SHEET 3 AA1 6 VAL A 154 GLY A 160 -1 O VAL A 158 N ALA A 89 SHEET 4 AA1 6 LEU A 106 CYS A 112 1 N LEU A 106 O LYS A 155 SHEET 5 AA1 6 VAL A 184 PHE A 186 1 O VAL A 184 N GLY A 109 SHEET 6 AA1 6 GLY A 363 ILE A 364 1 O ILE A 364 N VAL A 185 SHEET 1 AA2 2 HIS A 189 SER A 191 0 SHEET 2 AA2 2 TYR A 367 HIS A 369 1 O PHE A 368 N SER A 191 SHEET 1 AA3 4 ARG A 250 ASN A 257 0 SHEET 2 AA3 4 TYR A 268 ALA A 277 -1 O TYR A 274 N HIS A 252 SHEET 3 AA3 4 ALA A 202 TYR A 211 -1 N VAL A 208 O LEU A 271 SHEET 4 AA3 4 THR A 304 GLY A 309 -1 O LYS A 308 N THR A 207 LINK SG CYS A 124 ZN ZN A 501 1555 1555 2.26 LINK SG CYS A 124 ZN ZN A 502 1555 1555 2.85 LINK NE2 HIS A 126 ZN ZN A 502 1555 1555 2.23 LINK OE2 GLU A 165 ZN ZN A 501 1555 1555 2.00 LINK NE2 HIS A 189 ZN ZN A 502 1555 1555 2.19 LINK NE2 HIS A 377 ZN ZN A 501 1555 1555 2.26 LINK ZN ZN A 501 O HOH A 621 1555 1555 2.06 LINK ZN ZN A 502 O HOH A 604 1555 1555 2.20 LINK ZN ZN A 502 O HOH A 621 1555 1555 2.13 CISPEP 1 PRO A 70 PRO A 71 0 -9.18 CRYST1 78.834 112.888 123.217 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012685 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008116 0.00000