HEADER HYDROLASE 13-JUL-22 7YHH TITLE SOLUTION STRUCTURE OF S-DI-MANNOSYLATED S3C MUTANT OF CARBOHYDRATE TITLE 2 BINDING MODULE (CBM) OF THE GLYCOSIDE HYDROLASE FAMILY 7 TITLE 3 CELLOBIOHYDROLASE FROM TRICHODERMA REESEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOGLUCANASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-CELLOBIOHYDROLASE,CELLOBIOHYDROLASE 7A,CEL7A, COMPND 5 EXOCELLOBIOHYDROLASE I,CBHI,EXOGLUCANASE I; COMPND 6 EC: 3.2.1.91; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: TRICHODERMA REESEI; SOURCE 4 ORGANISM_TAXID: 51453 KEYWDS CARBOHYDRATE BINDING, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHEN,Y.FENG,Z.TAN REVDAT 4 20-NOV-24 7YHH 1 REMARK REVDAT 3 20-SEP-23 7YHH 1 JRNL REVDAT 2 13-SEP-23 7YHH 1 JRNL REMARK REVDAT 1 19-JUL-23 7YHH 0 JRNL AUTH C.CHEN,B.MA,Y.WANG,Q.CUI,L.YAO,Y.LI,B.CHEN,Y.FENG,Z.TAN JRNL TITL STRUCTURAL INSIGHT INTO WHY S-LINKED GLYCOSYLATION CANNOT JRNL TITL 2 ADEQUATELY MIMIC THE ROLE OF NATURAL O-GLYCOSYLATION. JRNL REF INT.J.BIOL.MACROMOL. V. 253 26649 2023 JRNL REFN ISSN 0141-8130 JRNL PMID 37666405 JRNL DOI 10.1016/J.IJBIOMAC.2023.126649 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030924. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 4 MG/ML CBMS3C-MANMAN, 50 MM [U REMARK 210 -100% 2H] SODIUM ACETATE, 0.01 % REMARK 210 W/V DSS, 90% H2O/10% D2O; 4 MG/ REMARK 210 ML CBMS3C-MANMAN, 50 MM [U-100% REMARK 210 2H] SODIUM ACETATE, 0.01 % W/V REMARK 210 DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H COSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC-TOCSY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C H2BC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 3 C1 MAN B 1 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 94.90 -69.46 REMARK 500 6 TYR A 5 6.85 81.59 REMARK 500 12 SER A 14 31.66 -99.37 REMARK 500 16 TYR A 5 3.78 83.42 REMARK 500 19 TYR A 5 1.25 83.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1 MAN B 1 REMARK 610 2 MAN B 1 REMARK 610 3 MAN B 1 REMARK 610 4 MAN B 1 REMARK 610 5 MAN B 1 REMARK 610 6 MAN B 1 REMARK 610 7 MAN B 1 REMARK 610 8 MAN B 1 REMARK 610 9 MAN B 1 REMARK 610 10 MAN B 1 REMARK 610 11 MAN B 1 REMARK 610 12 MAN B 1 REMARK 610 13 MAN B 1 REMARK 610 14 MAN B 1 REMARK 610 15 MAN B 1 REMARK 610 16 MAN B 1 REMARK 610 17 MAN B 1 REMARK 610 18 MAN B 1 REMARK 610 19 MAN B 1 REMARK 610 20 MAN B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7YHF RELATED DB: PDB REMARK 900 RELATED ID: 7YHG RELATED DB: PDB REMARK 900 RELATED ID: 36499 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF S-DI-MANNOSYLATED S3C MUTANT OF CARBOHYDRATE REMARK 900 BINDING MODULE (CBM) OF THE GLYCOSIDE HYDROLASE FAMILY 7 REMARK 900 CELLOBIOHYDROLASE FROM TRICHODERMA REESEI REMARK 900 RELATED ID: 7YHI RELATED DB: PDB REMARK 900 RELATED ID: 5X34 RELATED DB: PDB REMARK 900 RELATED ID: 5X36 RELATED DB: PDB DBREF 7YHH A 1 36 UNP P62694 GUX1_HYPJE 478 513 SEQADV 7YHH CYS A 3 UNP P62694 SER 480 ENGINEERED MUTATION SEQRES 1 A 36 THR GLN CYS HIS TYR GLY GLN CYS GLY GLY ILE GLY TYR SEQRES 2 A 36 SER GLY PRO THR VAL CYS ALA SER GLY THR THR CYS GLN SEQRES 3 A 36 VAL LEU ASN PRO TYR TYR SER GLN CYS LEU HET MAN B 1 21 HET MAN B 2 22 HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 MAN 2(C6 H12 O6) SHEET 1 AA1 2 CYS A 25 VAL A 27 0 SHEET 2 AA1 2 SER A 33 CYS A 35 -1 O GLN A 34 N GLN A 26 SSBOND 1 CYS A 8 CYS A 25 1555 1555 2.02 SSBOND 2 CYS A 19 CYS A 35 1555 1555 2.03 LINK O2 MAN B 1 C1 MAN B 2 1555 1555 1.39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 112 311 CONECT 245 471 CONECT 311 112 CONECT 471 245 CONECT 497 498 506 508 CONECT 498 497 499 503 509 CONECT 499 498 500 504 510 CONECT 500 499 501 505 511 CONECT 501 500 502 506 512 CONECT 502 501 507 513 514 CONECT 503 498 518 CONECT 504 499 515 CONECT 505 500 516 CONECT 506 497 501 CONECT 507 502 517 CONECT 508 497 CONECT 509 498 CONECT 510 499 CONECT 511 500 CONECT 512 501 CONECT 513 502 CONECT 514 502 CONECT 515 504 CONECT 516 505 CONECT 517 507 CONECT 518 503 519 527 529 CONECT 519 518 520 524 530 CONECT 520 519 521 525 531 CONECT 521 520 522 526 532 CONECT 522 521 523 527 533 CONECT 523 522 528 534 535 CONECT 524 519 536 CONECT 525 520 537 CONECT 526 521 538 CONECT 527 518 522 CONECT 528 523 539 CONECT 529 518 CONECT 530 519 CONECT 531 520 CONECT 532 521 CONECT 533 522 CONECT 534 523 CONECT 535 523 CONECT 536 524 CONECT 537 525 CONECT 538 526 CONECT 539 528 MASTER 141 0 2 0 2 0 0 6 282 1 47 3 END