HEADER DNA BINDING PROTEIN/DNA 14-JUL-22 7YHO TITLE CRYOEM STRUCTURE OF ARABIDOPSIS ROS1 IN COMPLEX WITH TG MISMATCH DSDNA TITLE 2 AT 3.3 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEX-DETERMINING REGION Y PROTEIN,DNA GLYCOSYLASE/AP LYASE COMPND 3 ROS1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: TESTIS-DETERMINING FACTOR,DEMETER-LIKE PROTEIN 1,PROTEIN COMPND 6 REPRESSOR OF SILENCING 1,PROTEIN ROS1; COMPND 7 EC: 4.2.99.18; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: FUSION PROTEIN OF RESIDUES 56 TO 130 OF DATABASE UNP COMPND 11 Q05066, LINKER, RESIDUES 511 TO 1393 OF DATABASE UNP Q9SJQ6, WITH COMPND 12 DELETION OF RESIDUES 665-835 AND 1074-1109.; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: DNA (40-MER); COMPND 15 CHAIN: B; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: DNA (40-MER); COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: HUMAN, THALE CRESS; SOURCE 4 ORGANISM_TAXID: 9606, 3702; SOURCE 5 GENE: SRY, TDF, ROS1, DML1, AT2G36490, F1O11.12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 10 ORGANISM_COMMON: THALE CRESS; SOURCE 11 ORGANISM_TAXID: 3702; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 16 ORGANISM_COMMON: THALE CRESS; SOURCE 17 ORGANISM_TAXID: 3702; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROS1, DNA GLYCOSYLASE, DNA DEMETHYLATION, DNA BINDING PROTEIN, DNA KEYWDS 2 BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR X.DU,J.DU REVDAT 2 08-MAR-23 7YHO 1 JRNL REVDAT 1 30-NOV-22 7YHO 0 JRNL AUTH X.DU,Z.YANG,G.XIE,C.WANG,L.ZHANG,K.YAN,M.YANG,S.LI,J.K.ZHU, JRNL AUTH 2 J.DU JRNL TITL MOLECULAR BASIS OF THE PLANT ROS1-MEDIATED ACTIVE DNA JRNL TITL 2 DEMETHYLATION. JRNL REF NAT.PLANTS V. 9 271 2023 JRNL REFN ESSN 2055-0278 JRNL PMID 36624257 JRNL DOI 10.1038/S41477-022-01322-8 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 111356 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7YHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030575. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ROS1-TG MISMATCH DSDNA COMPLEX; REMARK 245 ROS1; TG MISMATCH DSDNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.70 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : OTHER REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 120.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : OTHER REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 430 REMARK 465 VAL A 431 REMARK 465 GLN A 432 REMARK 465 ASP A 433 REMARK 465 ARG A 434 REMARK 465 VAL A 435 REMARK 465 LYS A 436 REMARK 465 ARG A 437 REMARK 465 PRO A 438 REMARK 465 MET A 439 REMARK 465 ASN A 440 REMARK 465 ALA A 441 REMARK 465 PHE A 442 REMARK 465 ILE A 443 REMARK 465 VAL A 444 REMARK 465 TRP A 445 REMARK 465 SER A 446 REMARK 465 ARG A 447 REMARK 465 ASP A 448 REMARK 465 GLN A 449 REMARK 465 ARG A 450 REMARK 465 ARG A 451 REMARK 465 LYS A 452 REMARK 465 MET A 453 REMARK 465 ALA A 454 REMARK 465 LEU A 455 REMARK 465 GLU A 456 REMARK 465 ASN A 457 REMARK 465 PRO A 458 REMARK 465 ARG A 459 REMARK 465 MET A 460 REMARK 465 ARG A 461 REMARK 465 ASN A 462 REMARK 465 SER A 463 REMARK 465 GLU A 464 REMARK 465 ILE A 465 REMARK 465 SER A 466 REMARK 465 LYS A 467 REMARK 465 GLN A 468 REMARK 465 LEU A 469 REMARK 465 GLY A 470 REMARK 465 TYR A 471 REMARK 465 GLN A 472 REMARK 465 TRP A 473 REMARK 465 LYS A 474 REMARK 465 MET A 475 REMARK 465 LEU A 476 REMARK 465 THR A 477 REMARK 465 GLU A 478 REMARK 465 ALA A 479 REMARK 465 GLU A 480 REMARK 465 LYS A 481 REMARK 465 TRP A 482 REMARK 465 PRO A 483 REMARK 465 PHE A 484 REMARK 465 PHE A 485 REMARK 465 GLN A 486 REMARK 465 GLU A 487 REMARK 465 ALA A 488 REMARK 465 GLN A 489 REMARK 465 LYS A 490 REMARK 465 LEU A 491 REMARK 465 GLN A 492 REMARK 465 ALA A 493 REMARK 465 MET A 494 REMARK 465 HIS A 495 REMARK 465 ARG A 496 REMARK 465 GLU A 497 REMARK 465 LYS A 498 REMARK 465 TYR A 499 REMARK 465 PRO A 500 REMARK 465 ASN A 501 REMARK 465 TYR A 502 REMARK 465 LYS A 503 REMARK 465 TYR A 504 REMARK 465 ARG A 505 REMARK 465 LYS A 506 REMARK 465 GLY A 507 REMARK 465 GLY A 508 REMARK 465 SER A 509 REMARK 465 SER A 510 REMARK 465 ALA A 511 REMARK 465 GLY A 512 REMARK 465 ALA A 513 REMARK 465 ILE A 514 REMARK 465 VAL A 515 REMARK 465 PRO A 516 REMARK 465 VAL A 517 REMARK 465 THR A 518 REMARK 465 PRO A 519 REMARK 465 VAL A 520 REMARK 465 LYS A 521 REMARK 465 LYS A 522 REMARK 465 PRO A 523 REMARK 465 ARG A 524 REMARK 465 PRO A 525 REMARK 465 ARG A 526 REMARK 465 PRO A 527 REMARK 465 LYS A 528 REMARK 465 VAL A 529 REMARK 465 ASP A 530 REMARK 465 LEU A 531 REMARK 465 ASP A 532 REMARK 465 ASP A 533 REMARK 465 GLU A 534 REMARK 465 THR A 535 REMARK 465 ASP A 536 REMARK 465 ARG A 537 REMARK 465 VAL A 538 REMARK 465 TRP A 539 REMARK 465 LYS A 540 REMARK 465 LEU A 541 REMARK 465 LEU A 542 REMARK 465 LEU A 543 REMARK 465 GLU A 544 REMARK 465 ASN A 545 REMARK 465 ILE A 546 REMARK 465 ASN A 547 REMARK 465 SER A 548 REMARK 465 GLU A 549 REMARK 465 GLY A 550 REMARK 465 VAL A 551 REMARK 465 ASP A 552 REMARK 465 GLY A 553 REMARK 465 SER A 554 REMARK 465 ASP A 555 REMARK 465 GLU A 556 REMARK 465 GLN A 557 REMARK 465 LYS A 558 REMARK 465 ALA A 559 REMARK 465 PRO A 802 REMARK 465 SER A 803 REMARK 465 SER A 804 REMARK 465 ASN A 805 REMARK 465 PHE A 806 REMARK 465 ASP A 807 REMARK 465 ALA A 808 REMARK 465 GLY A 809 REMARK 465 THR A 810 REMARK 465 SER A 811 REMARK 465 SER A 812 REMARK 465 MET A 813 REMARK 465 PRO A 814 REMARK 465 SER A 815 REMARK 465 ILE A 816 REMARK 465 GLN A 817 REMARK 465 ILE A 818 REMARK 465 THR A 819 REMARK 465 TYR A 820 REMARK 465 LEU A 821 REMARK 465 ASP A 822 REMARK 465 SER A 823 REMARK 465 GLU A 824 REMARK 465 GLU A 825 REMARK 465 THR A 826 REMARK 465 MET A 827 REMARK 465 SER A 828 REMARK 465 SER A 829 REMARK 465 PRO A 830 REMARK 465 PRO A 831 REMARK 465 ASP A 832 REMARK 465 HIS A 833 REMARK 465 ASN A 834 REMARK 465 HIS A 835 REMARK 465 SER A 836 REMARK 465 CYS A 837 REMARK 465 GLN A 838 REMARK 465 LYS A 839 REMARK 465 PRO A 840 REMARK 465 THR A 841 REMARK 465 LEU A 842 REMARK 465 LYS A 843 REMARK 465 GLU A 844 REMARK 465 LYS A 845 REMARK 465 GLY A 846 REMARK 465 LYS A 847 REMARK 465 LYS A 848 REMARK 465 VAL A 849 REMARK 465 LEU A 850 REMARK 465 LYS A 851 REMARK 465 GLU A 852 REMARK 465 GLU A 853 REMARK 465 LYS A 854 REMARK 465 LYS A 855 REMARK 465 ALA A 856 REMARK 465 PHE A 857 REMARK 465 ASP A 858 REMARK 465 TRP A 859 REMARK 465 ASP A 860 REMARK 465 CYS A 861 REMARK 465 LEU A 862 REMARK 465 ARG A 863 REMARK 465 ARG A 864 REMARK 465 GLU A 865 REMARK 465 ALA A 866 REMARK 465 GLN A 867 REMARK 465 ALA A 868 REMARK 465 ARG A 869 REMARK 465 ALA A 870 REMARK 465 GLY A 871 REMARK 465 ILE A 872 REMARK 465 ARG A 873 REMARK 465 GLU A 874 REMARK 465 LYS A 875 REMARK 465 THR A 876 REMARK 465 ARG A 877 REMARK 465 PRO A 985 REMARK 465 LEU A 986 REMARK 465 GLN A 987 REMARK 465 PRO A 988 REMARK 465 LEU A 989 REMARK 465 PRO A 990 REMARK 465 GLU A 991 REMARK 465 SER A 992 REMARK 465 LEU A 993 REMARK 465 GLN A 994 REMARK 465 LEU A 995 REMARK 465 HIS A 996 REMARK 465 LEU A 997 REMARK 465 LEU A 998 REMARK 465 ALA A 1098 REMARK 465 SER A 1099 REMARK 465 ALA A 1100 REMARK 465 ARG A 1101 REMARK 465 LEU A 1102 REMARK 465 ALA A 1103 REMARK 465 LEU A 1104 REMARK 465 PRO A 1105 REMARK 465 SER A 1106 REMARK 465 THR A 1107 REMARK 465 GLU A 1108 REMARK 465 LYS A 1109 REMARK 465 THR A 1110 REMARK 465 CYS A 1111 REMARK 465 CYS A 1112 REMARK 465 GLU A 1113 REMARK 465 PRO A 1114 REMARK 465 ILE A 1115 REMARK 465 ILE A 1116 REMARK 465 GLU A 1117 REMARK 465 GLU A 1118 REMARK 465 PRO A 1119 REMARK 465 ALA A 1120 REMARK 465 SER A 1121 REMARK 465 PRO A 1122 REMARK 465 GLU A 1123 REMARK 465 PRO A 1124 REMARK 465 GLU A 1125 REMARK 465 THR A 1126 REMARK 465 ALA A 1127 REMARK 465 GLU A 1128 REMARK 465 VAL A 1129 REMARK 465 SER A 1130 REMARK 465 ILE A 1131 REMARK 465 ALA A 1132 REMARK 465 ASP A 1133 REMARK 465 ILE A 1134 REMARK 465 GLU A 1135 REMARK 465 GLU A 1136 REMARK 465 ALA A 1137 REMARK 465 PHE A 1138 REMARK 465 PHE A 1139 REMARK 465 GLU A 1140 REMARK 465 ASP A 1141 REMARK 465 PRO A 1142 REMARK 465 GLU A 1143 REMARK 465 GLU A 1144 REMARK 465 ILE A 1145 REMARK 465 PRO A 1146 REMARK 465 THR A 1147 REMARK 465 ILE A 1148 REMARK 465 ARG A 1149 REMARK 465 LEU A 1150 REMARK 465 ASN A 1151 REMARK 465 MET A 1152 REMARK 465 ASP A 1153 REMARK 465 ALA A 1154 REMARK 465 PHE A 1155 REMARK 465 THR A 1156 REMARK 465 SER A 1157 REMARK 465 ASN A 1158 REMARK 465 LEU A 1159 REMARK 465 LYS A 1160 REMARK 465 LYS A 1161 REMARK 465 ILE A 1162 REMARK 465 MET A 1163 REMARK 465 GLU A 1164 REMARK 465 HIS A 1165 REMARK 465 ASN A 1166 REMARK 465 LYS A 1167 REMARK 465 GLU A 1168 REMARK 465 LEU A 1169 REMARK 465 GLN A 1170 REMARK 465 ASP A 1171 REMARK 465 GLY A 1172 REMARK 465 ASN A 1173 REMARK 465 MET A 1174 REMARK 465 SER A 1175 REMARK 465 SER A 1176 REMARK 465 ALA A 1177 REMARK 465 LEU A 1178 REMARK 465 VAL A 1179 REMARK 465 ALA A 1180 REMARK 465 LEU A 1181 REMARK 465 THR A 1182 REMARK 465 ALA A 1183 REMARK 465 GLU A 1184 REMARK 465 THR A 1185 REMARK 465 ALA A 1186 REMARK 465 SER A 1187 REMARK 465 LEU A 1188 REMARK 465 PRO A 1189 REMARK 465 MET A 1190 REMARK 465 PRO A 1191 REMARK 465 LYS A 1192 REMARK 465 LEU A 1193 REMARK 465 LYS A 1194 REMARK 465 ASN A 1195 REMARK 465 ILE A 1196 REMARK 465 SER A 1197 REMARK 465 GLN A 1198 REMARK 465 LEU A 1199 REMARK 465 ARG A 1200 REMARK 465 THR A 1201 REMARK 465 GLU A 1202 REMARK 465 THR A 1235 REMARK 465 PRO A 1236 REMARK 465 GLY A 1237 REMARK 465 GLU A 1238 REMARK 465 THR A 1239 REMARK 465 ALA A 1240 REMARK 465 ASP A 1241 REMARK 465 SER A 1242 REMARK 465 ILE A 1243 REMARK 465 GLN A 1244 REMARK 465 PRO A 1245 REMARK 465 SER A 1246 REMARK 465 VAL A 1247 REMARK 465 SER A 1248 REMARK 465 THR A 1249 REMARK 465 CYS A 1250 REMARK 465 ILE A 1251 REMARK 465 PHE A 1252 REMARK 465 GLN A 1253 REMARK 465 ALA A 1254 REMARK 465 ASN A 1255 REMARK 465 GLY A 1256 REMARK 465 MET A 1257 REMARK 465 LEU A 1258 REMARK 465 CYS A 1259 REMARK 465 ASP A 1260 REMARK 465 GLU A 1261 REMARK 465 GLU A 1262 REMARK 465 THR A 1263 REMARK 465 CYS A 1264 REMARK 465 PHE A 1265 REMARK 465 SER A 1266 REMARK 465 CYS A 1267 REMARK 465 ASN A 1268 REMARK 465 SER A 1269 REMARK 465 ILE A 1270 REMARK 465 LYS A 1271 REMARK 465 GLU A 1272 REMARK 465 THR A 1273 REMARK 465 ARG A 1274 REMARK 465 SER A 1275 REMARK 465 GLN A 1276 REMARK 465 ILE A 1277 REMARK 465 VAL A 1278 REMARK 465 ARG A 1279 REMARK 465 ARG A 1321 REMARK 465 GLU A 1322 REMARK 465 LEU A 1323 REMARK 465 ILE A 1324 REMARK 465 TRP A 1325 REMARK 465 GLU A 1326 REMARK 465 LEU A 1327 REMARK 465 ILE A 1375 REMARK 465 ALA A 1376 REMARK 465 ARG A 1377 REMARK 465 LEU A 1378 REMARK 465 HIS A 1379 REMARK 465 PHE A 1380 REMARK 465 PRO A 1381 REMARK 465 ALA A 1382 REMARK 465 SER A 1383 REMARK 465 LYS A 1384 REMARK 465 LEU A 1385 REMARK 465 LYS A 1386 REMARK 465 GLY A 1387 REMARK 465 GLN A 1388 REMARK 465 GLN A 1389 REMARK 465 ALA A 1390 REMARK 465 ASN A 1391 REMARK 465 LEU A 1392 REMARK 465 ALA A 1393 REMARK 465 DT B 1 REMARK 465 DA B 28 REMARK 465 DT B 29 REMARK 465 DG B 30 REMARK 465 DC B 31 REMARK 465 DA B 32 REMARK 465 DT B 33 REMARK 465 DC B 34 REMARK 465 DA B 35 REMARK 465 DC B 36 REMARK 465 DA B 37 REMARK 465 DG B 38 REMARK 465 DA B 39 REMARK 465 DG B 40 REMARK 465 DC C 1 REMARK 465 DT C 2 REMARK 465 DC C 3 REMARK 465 DT C 4 REMARK 465 DG C 5 REMARK 465 DT C 6 REMARK 465 DG C 7 REMARK 465 DA C 8 REMARK 465 DT C 9 REMARK 465 DG C 10 REMARK 465 DC C 11 REMARK 465 DA C 12 REMARK 465 DT C 13 REMARK 465 DT C 14 REMARK 465 DG C 15 REMARK 465 DT C 16 REMARK 465 DA C 40 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A1027 CE1 - NE2 - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 981 51.73 -94.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1038 SG REMARK 620 2 SF4 A1401 S1 112.3 REMARK 620 3 SF4 A1401 S3 108.5 104.1 REMARK 620 4 SF4 A1401 S4 122.0 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1045 SG REMARK 620 2 SF4 A1401 S2 115.2 REMARK 620 3 SF4 A1401 S3 104.2 104.2 REMARK 620 4 SF4 A1401 S4 123.0 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1048 SG REMARK 620 2 SF4 A1401 S1 115.4 REMARK 620 3 SF4 A1401 S2 115.1 104.0 REMARK 620 4 SF4 A1401 S4 112.7 104.2 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A1401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1054 SG REMARK 620 2 SF4 A1401 S1 117.0 REMARK 620 3 SF4 A1401 S2 118.7 104.1 REMARK 620 4 SF4 A1401 S3 107.1 104.0 104.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-33832 RELATED DB: EMDB REMARK 900 CRYOEM STRUCTURE OF ARABIDOPSIS ROS1 IN COMPLEX WITH TG MISMATCH REMARK 900 DSDNA AT 3.3 ANGSTROMS RESOLUTION DBREF 7YHO A 431 505 UNP Q05066 SRY_HUMAN 56 130 DBREF 7YHO A 511 835 UNP Q9SJQ6 ROS1_ARATH 511 664 DBREF 7YHO A 836 1109 UNP Q9SJQ6 ROS1_ARATH 836 1073 DBREF 7YHO A 1110 1393 UNP Q9SJQ6 ROS1_ARATH 1110 1393 DBREF 7YHO B 1 40 PDB 7YHO 7YHO 1 40 DBREF 7YHO C 1 40 PDB 7YHO 7YHO 1 40 SEQADV 7YHO SER A 430 UNP Q05066 EXPRESSION TAG SEQADV 7YHO LYS A 506 UNP Q05066 LINKER SEQADV 7YHO GLY A 507 UNP Q05066 LINKER SEQADV 7YHO GLY A 508 UNP Q05066 LINKER SEQADV 7YHO SER A 509 UNP Q05066 LINKER SEQADV 7YHO SER A 510 UNP Q05066 LINKER SEQADV 7YHO ASN A 971 UNP Q9SJQ6 ASP 971 ENGINEERED MUTATION SEQRES 1 A 757 SER VAL GLN ASP ARG VAL LYS ARG PRO MET ASN ALA PHE SEQRES 2 A 757 ILE VAL TRP SER ARG ASP GLN ARG ARG LYS MET ALA LEU SEQRES 3 A 757 GLU ASN PRO ARG MET ARG ASN SER GLU ILE SER LYS GLN SEQRES 4 A 757 LEU GLY TYR GLN TRP LYS MET LEU THR GLU ALA GLU LYS SEQRES 5 A 757 TRP PRO PHE PHE GLN GLU ALA GLN LYS LEU GLN ALA MET SEQRES 6 A 757 HIS ARG GLU LYS TYR PRO ASN TYR LYS TYR ARG LYS GLY SEQRES 7 A 757 GLY SER SER ALA GLY ALA ILE VAL PRO VAL THR PRO VAL SEQRES 8 A 757 LYS LYS PRO ARG PRO ARG PRO LYS VAL ASP LEU ASP ASP SEQRES 9 A 757 GLU THR ASP ARG VAL TRP LYS LEU LEU LEU GLU ASN ILE SEQRES 10 A 757 ASN SER GLU GLY VAL ASP GLY SER ASP GLU GLN LYS ALA SEQRES 11 A 757 LYS TRP TRP GLU GLU GLU ARG ASN VAL PHE ARG GLY ARG SEQRES 12 A 757 ALA ASP SER PHE ILE ALA ARG MET HIS LEU VAL GLN GLY SEQRES 13 A 757 ASP ARG ARG PHE THR PRO TRP LYS GLY SER VAL VAL ASP SEQRES 14 A 757 SER VAL VAL GLY VAL PHE LEU THR GLN ASN VAL SER ASP SEQRES 15 A 757 HIS LEU SER SER SER ALA PHE MET SER LEU ALA SER GLN SEQRES 16 A 757 PHE PRO VAL PRO PHE VAL PRO SER SER ASN PHE ASP ALA SEQRES 17 A 757 GLY THR SER SER MET PRO SER ILE GLN ILE THR TYR LEU SEQRES 18 A 757 ASP SER GLU GLU THR MET SER SER PRO PRO ASP HIS ASN SEQRES 19 A 757 HIS SER CYS GLN LYS PRO THR LEU LYS GLU LYS GLY LYS SEQRES 20 A 757 LYS VAL LEU LYS GLU GLU LYS LYS ALA PHE ASP TRP ASP SEQRES 21 A 757 CYS LEU ARG ARG GLU ALA GLN ALA ARG ALA GLY ILE ARG SEQRES 22 A 757 GLU LYS THR ARG SER THR MET ASP THR VAL ASP TRP LYS SEQRES 23 A 757 ALA ILE ARG ALA ALA ASP VAL LYS GLU VAL ALA GLU THR SEQRES 24 A 757 ILE LYS SER ARG GLY MET ASN HIS LYS LEU ALA GLU ARG SEQRES 25 A 757 ILE GLN GLY PHE LEU ASP ARG LEU VAL ASN ASP HIS GLY SEQRES 26 A 757 SER ILE ASP LEU GLU TRP LEU ARG ASP VAL PRO PRO ASP SEQRES 27 A 757 LYS ALA LYS GLU TYR LEU LEU SER PHE ASN GLY LEU GLY SEQRES 28 A 757 LEU LYS SER VAL GLU CYS VAL ARG LEU LEU THR LEU HIS SEQRES 29 A 757 HIS LEU ALA PHE PRO VAL ASN THR ASN VAL GLY ARG ILE SEQRES 30 A 757 ALA VAL ARG LEU GLY TRP VAL PRO LEU GLN PRO LEU PRO SEQRES 31 A 757 GLU SER LEU GLN LEU HIS LEU LEU GLU MET TYR PRO MET SEQRES 32 A 757 LEU GLU SER ILE GLN LYS TYR LEU TRP PRO ARG LEU CYS SEQRES 33 A 757 LYS LEU ASP GLN LYS THR LEU TYR GLU LEU HIS TYR GLN SEQRES 34 A 757 MET ILE THR PHE GLY LYS VAL PHE CYS THR LYS SER LYS SEQRES 35 A 757 PRO ASN CYS ASN ALA CYS PRO MET LYS GLY GLU CYS ARG SEQRES 36 A 757 HIS PHE ALA SER ALA PHE ALA SER ALA ARG LEU ALA LEU SEQRES 37 A 757 PRO SER THR GLU LYS THR CYS CYS GLU PRO ILE ILE GLU SEQRES 38 A 757 GLU PRO ALA SER PRO GLU PRO GLU THR ALA GLU VAL SER SEQRES 39 A 757 ILE ALA ASP ILE GLU GLU ALA PHE PHE GLU ASP PRO GLU SEQRES 40 A 757 GLU ILE PRO THR ILE ARG LEU ASN MET ASP ALA PHE THR SEQRES 41 A 757 SER ASN LEU LYS LYS ILE MET GLU HIS ASN LYS GLU LEU SEQRES 42 A 757 GLN ASP GLY ASN MET SER SER ALA LEU VAL ALA LEU THR SEQRES 43 A 757 ALA GLU THR ALA SER LEU PRO MET PRO LYS LEU LYS ASN SEQRES 44 A 757 ILE SER GLN LEU ARG THR GLU HIS ARG VAL TYR GLU LEU SEQRES 45 A 757 PRO ASP GLU HIS PRO LEU LEU ALA GLN LEU GLU LYS ARG SEQRES 46 A 757 GLU PRO ASP ASP PRO CYS SER TYR LEU LEU ALA ILE TRP SEQRES 47 A 757 THR PRO GLY GLU THR ALA ASP SER ILE GLN PRO SER VAL SEQRES 48 A 757 SER THR CYS ILE PHE GLN ALA ASN GLY MET LEU CYS ASP SEQRES 49 A 757 GLU GLU THR CYS PHE SER CYS ASN SER ILE LYS GLU THR SEQRES 50 A 757 ARG SER GLN ILE VAL ARG GLY THR ILE LEU ILE PRO CYS SEQRES 51 A 757 ARG THR ALA MET ARG GLY SER PHE PRO LEU ASN GLY THR SEQRES 52 A 757 TYR PHE GLN VAL ASN GLU VAL PHE ALA ASP HIS ALA SER SEQRES 53 A 757 SER LEU ASN PRO ILE ASN VAL PRO ARG GLU LEU ILE TRP SEQRES 54 A 757 GLU LEU PRO ARG ARG THR VAL TYR PHE GLY THR SER VAL SEQRES 55 A 757 PRO THR ILE PHE LYS GLY LEU SER THR GLU LYS ILE GLN SEQRES 56 A 757 ALA CYS PHE TRP LYS GLY TYR VAL CYS VAL ARG GLY PHE SEQRES 57 A 757 ASP ARG LYS THR ARG GLY PRO LYS PRO LEU ILE ALA ARG SEQRES 58 A 757 LEU HIS PHE PRO ALA SER LYS LEU LYS GLY GLN GLN ALA SEQRES 59 A 757 ASN LEU ALA SEQRES 1 B 40 DT DA DG DC DT DG DA DG DT DG DA DT DC SEQRES 2 B 40 DC DG DG DA DG DT DC DT DG DA DA DA DC SEQRES 3 B 40 DA DA DT DG DC DA DT DC DA DC DA DG DA SEQRES 4 B 40 DG SEQRES 1 C 40 DC DT DC DT DG DT DG DA DT DG DC DA DT SEQRES 2 C 40 DT DG DT DT DT DC DA DG DA DC DT DC DT SEQRES 3 C 40 DG DG DA DT DC DA DC DT DC DA DG DC DT SEQRES 4 C 40 DA HET SF4 A1401 8 HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 4 SF4 FE4 S4 HELIX 1 AA1 LYS A 560 GLN A 584 1 25 HELIX 2 AA2 SER A 595 THR A 606 1 12 HELIX 3 AA3 SER A 610 PHE A 625 1 16 HELIX 4 AA4 ASP A 884 ALA A 891 1 8 HELIX 5 AA5 ASP A 892 ILE A 900 1 9 HELIX 6 AA6 MET A 905 ASP A 923 1 19 HELIX 7 AA7 LEU A 929 ASP A 934 5 6 HELIX 8 AA8 PRO A 936 PHE A 947 1 12 HELIX 9 AA9 GLY A 951 THR A 962 1 12 HELIX 10 AB1 ASN A 971 LEU A 981 1 11 HELIX 11 AB2 ILE A 1007 CYS A 1016 1 10 HELIX 12 AB3 ASP A 1019 PHE A 1037 1 19 HELIX 13 AB4 CYS A 1048 GLY A 1052 5 5 HELIX 14 AB5 CYS A 1054 PHE A 1061 1 8 HELIX 15 AB6 HIS A 1212 GLN A 1217 5 6 HELIX 16 AB7 CYS A 1286 ARG A 1291 1 6 HELIX 17 AB8 PRO A 1295 THR A 1299 5 5 HELIX 18 AB9 ASP A 1309 ASN A 1315 1 7 HELIX 19 AC1 SER A 1337 PHE A 1342 1 6 HELIX 20 AC2 SER A 1346 LYS A 1356 1 11 SHEET 1 AA1 7 ARG A1204 GLU A1207 0 SHEET 2 AA1 7 LEU A1230 ALA A1232 -1 O LEU A1231 N TYR A1206 SHEET 3 AA1 7 THR A1281 PRO A1285 -1 O THR A1281 N ALA A1232 SHEET 4 AA1 7 GLU A1305 ALA A1308 -1 O PHE A1307 N ILE A1284 SHEET 5 AA1 7 GLY A1357 CYS A1360 1 O VAL A1359 N VAL A1306 SHEET 6 AA1 7 ARG A1329 PHE A1334 1 N THR A1331 O TYR A1358 SHEET 7 AA1 7 ARG A1204 GLU A1207 -1 N VAL A1205 O ARG A1330 SHEET 1 AA2 2 GLY A1363 PHE A1364 0 SHEET 2 AA2 2 PRO A1371 LYS A1372 -1 O LYS A1372 N GLY A1363 LINK SG CYS A1038 FE2 SF4 A1401 1555 1555 2.27 LINK SG CYS A1045 FE1 SF4 A1401 1555 1555 2.27 LINK SG CYS A1048 FE3 SF4 A1401 1555 1555 2.27 LINK SG CYS A1054 FE4 SF4 A1401 1555 1555 2.26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000