HEADER ANTIVIRAL PROTEIN/IMMUNE SYSTEM 15-JUL-22 7YI6 TITLE BNAB 3D1 IN COMPLEX WITH 6-MER HR1 PEPTIDE FROM HCOV-229E S PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LIGHT CHAIN OF 3D1; COMPND 8 CHAIN: B, E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: HEAVY CHAIN OF 3D1; COMPND 12 CHAIN: D, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CORONAVIRUS 229E; SOURCE 3 ORGANISM_COMMON: HCOV-229E; SOURCE 4 ORGANISM_TAXID: 11137; SOURCE 5 GENE: S, 2; SOURCE 6 EXPRESSION_SYSTEM: CHEMICAL PRODUCTION METAGENOME; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2495586; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS BNAB, HR1, 6-MER, ANTIVIRAL PROTEIN, ANTIVIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.YAN,G.YANG REVDAT 1 30-AUG-23 7YI6 0 JRNL AUTH L.YAN,G.YANG JRNL TITL CROSS-REACTIVE EPITOPES BETWEEN HIV AND CORONAVIRUS REVEALED JRNL TITL 2 BY 3D1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 39006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.0000 - 5.5000 0.97 2666 146 0.1829 0.2161 REMARK 3 2 5.4900 - 4.3600 0.99 2662 143 0.1427 0.1621 REMARK 3 3 4.3600 - 3.8100 0.99 2663 145 0.1592 0.1825 REMARK 3 4 3.8100 - 3.4600 0.99 2643 142 0.1848 0.1895 REMARK 3 5 3.4600 - 3.2200 0.99 2654 144 0.1926 0.1981 REMARK 3 6 3.2200 - 3.0300 0.99 2630 141 0.2185 0.2434 REMARK 3 7 3.0300 - 2.8700 0.99 2636 143 0.2103 0.2459 REMARK 3 8 2.8700 - 2.7500 0.99 2657 143 0.2109 0.2465 REMARK 3 9 2.7500 - 2.6400 1.00 2660 143 0.2251 0.2683 REMARK 3 10 2.6400 - 2.5500 0.99 2631 143 0.2222 0.2777 REMARK 3 11 2.5500 - 2.4700 0.99 2613 140 0.2343 0.2807 REMARK 3 12 2.4700 - 2.4000 0.99 2621 143 0.2211 0.2873 REMARK 3 13 2.4000 - 2.3400 0.99 2644 142 0.2323 0.2567 REMARK 3 14 2.3400 - 2.2800 0.99 2626 142 0.2444 0.3051 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND RESID 836 THROUGH 841) REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 42 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 3 THROUGH 8 OR RESID REMARK 3 10 THROUGH 212)) REMARK 3 SELECTION : (CHAIN E AND (RESID 3 THROUGH 8 OR RESID REMARK 3 10 THROUGH 212)) REMARK 3 ATOM PAIRS NUMBER : 1805 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN D AND (RESID 1 THROUGH 134 OR REMARK 3 RESID 140 THROUGH 220)) REMARK 3 SELECTION : CHAIN F REMARK 3 ATOM PAIRS NUMBER : 1922 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YI6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300030958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 69.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KVF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 BUFFER AT PH 5.5 AND 25% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.35150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 213 REMARK 465 GLU B 214 REMARK 465 CYS B 215 REMARK 465 SER B 216 REMARK 465 ASP C 835 REMARK 465 THR E 213 REMARK 465 GLU E 214 REMARK 465 CYS E 215 REMARK 465 SER E 216 REMARK 465 SER F 135 REMARK 465 LYS F 136 REMARK 465 SER F 137 REMARK 465 THR F 138 REMARK 465 SER F 139 REMARK 465 PRO F 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 841 CA C O REMARK 470 ARG B 193 CG CD NE CZ NH1 NH2 REMARK 470 GLY C 841 CA C O REMARK 470 ARG E 193 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 840 C GLY A 841 N -0.403 REMARK 500 SER B 17 C VAL B 18 N -0.168 REMARK 500 GLN C 840 C GLY C 841 N -0.339 REMARK 500 SER E 17 C VAL E 18 N -0.139 REMARK 500 SER E 58 CB SER E 58 OG -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 839 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 GLN A 840 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 GLN B 16 O - C - N ANGL. DEV. = -13.9 DEGREES REMARK 500 SER B 17 C - N - CA ANGL. DEV. = 20.6 DEGREES REMARK 500 LEU D 145 CB - CG - CD1 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLN E 16 CA - C - N ANGL. DEV. = 14.1 DEGREES REMARK 500 GLN E 16 O - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 SER E 17 C - N - CA ANGL. DEV. = 20.2 DEGREES REMARK 500 SER E 17 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG E 56 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG E 56 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 VAL F 188 CG1 - CB - CG2 ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 28 -84.64 -144.83 REMARK 500 TYR B 34 58.33 -119.58 REMARK 500 VAL B 53 -45.13 77.28 REMARK 500 LYS B 133 59.49 -153.06 REMARK 500 ASP B 155 -97.48 55.42 REMARK 500 ASN B 174 12.50 59.05 REMARK 500 ASN D 162 62.31 38.87 REMARK 500 ASP E 28 -86.04 -142.62 REMARK 500 TYR E 34 57.18 -117.70 REMARK 500 VAL E 53 -44.39 76.86 REMARK 500 ASP E 155 -70.84 -137.33 REMARK 500 ASN E 174 9.81 59.22 REMARK 500 ASN F 162 62.11 38.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN A 840 17.54 REMARK 500 GLN C 840 20.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YI6 A 835 841 UNP P15423 SPIKE_CVH22 835 841 DBREF 7YI6 B 3 216 PDB 7YI6 7YI6 3 216 DBREF 7YI6 D 1 221 PDB 7YI6 7YI6 1 221 DBREF 7YI6 C 835 841 UNP P15423 SPIKE_CVH22 835 841 DBREF 7YI6 E 3 216 PDB 7YI6 7YI6 3 216 DBREF 7YI6 F 1 221 PDB 7YI6 7YI6 1 221 SEQRES 1 A 7 ASP VAL VAL ASN GLN GLN GLY SEQRES 1 B 214 ALA LEU THR GLN PRO PRO SER ALA SER GLY SER PRO GLY SEQRES 2 B 214 GLN SER VAL THR ILE SER CYS THR GLY THR SER SER ASP SEQRES 3 B 214 VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN GLN HIS SEQRES 4 B 214 PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU VAL SER SEQRES 5 B 214 LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 6 B 214 LYS SER GLY ASN THR ALA SER LEU THR VAL SER GLY LEU SEQRES 7 B 214 GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SER TYR SEQRES 8 B 214 THR SER SER SER THR LEU VAL PHE GLY GLY GLY THR LYS SEQRES 9 B 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 B 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 B 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 B 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 B 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 B 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 B 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 B 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 B 214 ALA PRO THR GLU CYS SER SEQRES 1 D 221 PCA VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 D 221 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 D 221 TYR SER PHE THR SER LEU SER MET ASN TRP VAL ARG GLN SEQRES 4 D 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 D 221 THR LYS SER GLY ASP PRO THR TYR ALA GLN ALA PHE THR SEQRES 6 D 221 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL ASN THR SEQRES 7 D 221 ALA TYR LEU GLN ILE ASN SER LEU GLU ALA GLY ASP THR SEQRES 8 D 221 ALA VAL TYR TYR CYS ALA ARG GLY GLN PRO PRO VAL GLY SEQRES 9 D 221 TRP THR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 D 221 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 D 221 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 D 221 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 D 221 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 D 221 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 D 221 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 D 221 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 D 221 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO PRO SEQRES 1 C 7 ASP VAL VAL ASN GLN GLN GLY SEQRES 1 E 214 ALA LEU THR GLN PRO PRO SER ALA SER GLY SER PRO GLY SEQRES 2 E 214 GLN SER VAL THR ILE SER CYS THR GLY THR SER SER ASP SEQRES 3 E 214 VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN GLN HIS SEQRES 4 E 214 PRO GLY LYS ALA PRO LYS LEU ILE ILE TYR GLU VAL SER SEQRES 5 E 214 LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER SEQRES 6 E 214 LYS SER GLY ASN THR ALA SER LEU THR VAL SER GLY LEU SEQRES 7 E 214 GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SER TYR SEQRES 8 E 214 THR SER SER SER THR LEU VAL PHE GLY GLY GLY THR LYS SEQRES 9 E 214 LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SER VAL SEQRES 10 E 214 THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN SEQRES 11 E 214 LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO SEQRES 12 E 214 GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO SEQRES 13 E 214 VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SEQRES 14 E 214 SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU SEQRES 15 E 214 THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS SEQRES 16 E 214 GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL SEQRES 17 E 214 ALA PRO THR GLU CYS SER SEQRES 1 F 221 PCA VAL GLN LEU VAL GLN SER GLY SER GLU LEU LYS LYS SEQRES 2 F 221 PRO GLY ALA SER VAL ARG ILE SER CYS LYS ALA SER GLY SEQRES 3 F 221 TYR SER PHE THR SER LEU SER MET ASN TRP VAL ARG GLN SEQRES 4 F 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 F 221 THR LYS SER GLY ASP PRO THR TYR ALA GLN ALA PHE THR SEQRES 6 F 221 GLY ARG PHE VAL PHE SER LEU ASP THR SER VAL ASN THR SEQRES 7 F 221 ALA TYR LEU GLN ILE ASN SER LEU GLU ALA GLY ASP THR SEQRES 8 F 221 ALA VAL TYR TYR CYS ALA ARG GLY GLN PRO PRO VAL GLY SEQRES 9 F 221 TRP THR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 F 221 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 F 221 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 F 221 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 F 221 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 F 221 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 F 221 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 F 221 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 F 221 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO PRO HET PCA D 1 8 HET PCA F 1 8 HET EDO B 301 4 HET EDO B 302 4 HET CL B 303 1 HET EDO D 301 4 HET EDO D 302 4 HET PEG E 301 7 HET EDO E 302 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PCA 2(C5 H7 N O3) FORMUL 7 EDO 5(C2 H6 O2) FORMUL 9 CL CL 1- FORMUL 12 PEG C4 H10 O3 FORMUL 14 HOH *458(H2 O) HELIX 1 AA1 GLN B 81 GLU B 85 5 5 HELIX 2 AA2 SER B 125 ALA B 131 1 7 HELIX 3 AA3 THR B 185 SER B 191 1 7 HELIX 4 AA4 SER D 28 LEU D 32 5 5 HELIX 5 AA5 GLN D 62 THR D 65 5 4 HELIX 6 AA6 THR D 74 VAL D 76 5 3 HELIX 7 AA7 GLU D 87 THR D 91 5 5 HELIX 8 AA8 SER D 135 SER D 139 5 5 HELIX 9 AA9 SER D 163 ALA D 165 5 3 HELIX 10 AB1 SER D 194 LEU D 196 5 3 HELIX 11 AB2 LYS D 208 ASN D 211 5 4 HELIX 12 AB3 GLN E 81 GLU E 85 5 5 HELIX 13 AB4 SER E 125 ALA E 131 1 7 HELIX 14 AB5 THR E 185 SER E 191 1 7 HELIX 15 AB6 SER F 28 LEU F 32 5 5 HELIX 16 AB7 GLN F 62 THR F 65 5 4 HELIX 17 AB8 THR F 74 VAL F 76 5 3 HELIX 18 AB9 GLU F 87 THR F 91 5 5 HELIX 19 AC1 SER F 163 ALA F 165 5 3 HELIX 20 AC2 LYS F 208 ASN F 211 5 4 SHEET 1 AA1 5 SER B 9 GLY B 12 0 SHEET 2 AA1 5 THR B 105 VAL B 109 1 O THR B 108 N ALA B 10 SHEET 3 AA1 5 ALA B 86 TYR B 93 -1 N ALA B 86 O LEU B 107 SHEET 4 AA1 5 VAL B 35 GLN B 40 -1 N GLN B 40 O ASP B 87 SHEET 5 AA1 5 LYS B 47 ILE B 50 -1 O ILE B 49 N TRP B 37 SHEET 1 AA2 4 SER B 9 GLY B 12 0 SHEET 2 AA2 4 THR B 105 VAL B 109 1 O THR B 108 N ALA B 10 SHEET 3 AA2 4 ALA B 86 TYR B 93 -1 N ALA B 86 O LEU B 107 SHEET 4 AA2 4 LEU B 99 PHE B 101 -1 O VAL B 100 N SER B 92 SHEET 1 AA3 3 VAL B 18 THR B 23 0 SHEET 2 AA3 3 THR B 72 VAL B 77 -1 O ALA B 73 N CYS B 22 SHEET 3 AA3 3 PHE B 64 SER B 69 -1 N SER B 67 O SER B 74 SHEET 1 AA4 4 SER B 118 PHE B 122 0 SHEET 2 AA4 4 THR B 135 PHE B 143 -1 O VAL B 137 N PHE B 122 SHEET 3 AA4 4 TYR B 176 SER B 183 -1 O LEU B 182 N LEU B 136 SHEET 4 AA4 4 VAL B 163 THR B 165 -1 N GLU B 164 O TYR B 181 SHEET 1 AA5 4 SER B 118 PHE B 122 0 SHEET 2 AA5 4 THR B 135 PHE B 143 -1 O VAL B 137 N PHE B 122 SHEET 3 AA5 4 TYR B 176 SER B 183 -1 O LEU B 182 N LEU B 136 SHEET 4 AA5 4 SER B 169 LYS B 170 -1 N SER B 169 O ALA B 177 SHEET 1 AA6 4 SER B 157 VAL B 159 0 SHEET 2 AA6 4 THR B 149 ALA B 154 -1 N ALA B 154 O SER B 157 SHEET 3 AA6 4 TYR B 195 HIS B 201 -1 O GLN B 198 N ALA B 151 SHEET 4 AA6 4 SER B 204 VAL B 210 -1 O VAL B 206 N VAL B 199 SHEET 1 AA7 4 GLN D 3 GLN D 6 0 SHEET 2 AA7 4 VAL D 18 SER D 25 -1 O LYS D 23 N VAL D 5 SHEET 3 AA7 4 THR D 78 ILE D 83 -1 O LEU D 81 N ILE D 20 SHEET 4 AA7 4 PHE D 68 ASP D 73 -1 N SER D 71 O TYR D 80 SHEET 1 AA8 6 GLU D 10 LYS D 12 0 SHEET 2 AA8 6 THR D 114 VAL D 118 1 O THR D 117 N GLU D 10 SHEET 3 AA8 6 ALA D 92 GLY D 99 -1 N ALA D 92 O VAL D 116 SHEET 4 AA8 6 MET D 34 GLN D 39 -1 N VAL D 37 O TYR D 95 SHEET 5 AA8 6 LEU D 45 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA8 6 PRO D 58 TYR D 60 -1 O THR D 59 N TRP D 50 SHEET 1 AA9 4 GLU D 10 LYS D 12 0 SHEET 2 AA9 4 THR D 114 VAL D 118 1 O THR D 117 N GLU D 10 SHEET 3 AA9 4 ALA D 92 GLY D 99 -1 N ALA D 92 O VAL D 116 SHEET 4 AA9 4 PHE D 107 TRP D 110 -1 O TYR D 109 N ARG D 98 SHEET 1 AB1 4 SER D 127 LEU D 131 0 SHEET 2 AB1 4 THR D 142 TYR D 152 -1 O GLY D 146 N LEU D 131 SHEET 3 AB1 4 TYR D 183 PRO D 192 -1 O TYR D 183 N TYR D 152 SHEET 4 AB1 4 VAL D 170 THR D 172 -1 N HIS D 171 O VAL D 188 SHEET 1 AB2 4 SER D 127 LEU D 131 0 SHEET 2 AB2 4 THR D 142 TYR D 152 -1 O GLY D 146 N LEU D 131 SHEET 3 AB2 4 TYR D 183 PRO D 192 -1 O TYR D 183 N TYR D 152 SHEET 4 AB2 4 VAL D 176 LEU D 177 -1 N VAL D 176 O SER D 184 SHEET 1 AB3 3 THR D 158 TRP D 161 0 SHEET 2 AB3 3 ILE D 202 HIS D 207 -1 O ASN D 206 N THR D 158 SHEET 3 AB3 3 THR D 212 LYS D 217 -1 O VAL D 214 N VAL D 205 SHEET 1 AB4 5 SER E 9 GLY E 12 0 SHEET 2 AB4 5 THR E 105 VAL E 109 1 O THR E 108 N ALA E 10 SHEET 3 AB4 5 ALA E 86 TYR E 93 -1 N ALA E 86 O LEU E 107 SHEET 4 AB4 5 VAL E 35 GLN E 40 -1 N TYR E 38 O TYR E 89 SHEET 5 AB4 5 LYS E 47 ILE E 50 -1 O LYS E 47 N GLN E 39 SHEET 1 AB5 4 SER E 9 GLY E 12 0 SHEET 2 AB5 4 THR E 105 VAL E 109 1 O THR E 108 N ALA E 10 SHEET 3 AB5 4 ALA E 86 TYR E 93 -1 N ALA E 86 O LEU E 107 SHEET 4 AB5 4 LEU E 99 PHE E 101 -1 O VAL E 100 N SER E 92 SHEET 1 AB6 3 VAL E 18 THR E 23 0 SHEET 2 AB6 3 THR E 72 VAL E 77 -1 O ALA E 73 N CYS E 22 SHEET 3 AB6 3 PHE E 64 SER E 69 -1 N SER E 65 O THR E 76 SHEET 1 AB7 4 SER E 118 PHE E 122 0 SHEET 2 AB7 4 ALA E 134 PHE E 143 -1 O LEU E 139 N THR E 120 SHEET 3 AB7 4 TYR E 176 LEU E 184 -1 O ALA E 178 N ILE E 140 SHEET 4 AB7 4 VAL E 163 THR E 165 -1 N GLU E 164 O TYR E 181 SHEET 1 AB8 4 SER E 118 PHE E 122 0 SHEET 2 AB8 4 ALA E 134 PHE E 143 -1 O LEU E 139 N THR E 120 SHEET 3 AB8 4 TYR E 176 LEU E 184 -1 O ALA E 178 N ILE E 140 SHEET 4 AB8 4 SER E 169 LYS E 170 -1 N SER E 169 O ALA E 177 SHEET 1 AB9 4 PRO E 158 VAL E 159 0 SHEET 2 AB9 4 THR E 149 LYS E 153 -1 N TRP E 152 O VAL E 159 SHEET 3 AB9 4 TYR E 195 HIS E 201 -1 O THR E 200 N THR E 149 SHEET 4 AB9 4 SER E 204 VAL E 210 -1 O SER E 204 N HIS E 201 SHEET 1 AC1 4 GLN F 3 GLN F 6 0 SHEET 2 AC1 4 VAL F 18 SER F 25 -1 O LYS F 23 N VAL F 5 SHEET 3 AC1 4 THR F 78 ILE F 83 -1 O LEU F 81 N ILE F 20 SHEET 4 AC1 4 PHE F 68 ASP F 73 -1 N ASP F 73 O THR F 78 SHEET 1 AC2 6 GLU F 10 LYS F 12 0 SHEET 2 AC2 6 THR F 114 VAL F 118 1 O THR F 117 N LYS F 12 SHEET 3 AC2 6 ALA F 92 GLY F 99 -1 N ALA F 92 O VAL F 116 SHEET 4 AC2 6 MET F 34 GLN F 39 -1 N ASN F 35 O ALA F 97 SHEET 5 AC2 6 LEU F 45 ILE F 51 -1 O MET F 48 N TRP F 36 SHEET 6 AC2 6 PRO F 58 TYR F 60 -1 O THR F 59 N TRP F 50 SHEET 1 AC3 4 GLU F 10 LYS F 12 0 SHEET 2 AC3 4 THR F 114 VAL F 118 1 O THR F 117 N LYS F 12 SHEET 3 AC3 4 ALA F 92 GLY F 99 -1 N ALA F 92 O VAL F 116 SHEET 4 AC3 4 PHE F 107 TRP F 110 -1 O TYR F 109 N ARG F 98 SHEET 1 AC4 4 SER F 127 LEU F 131 0 SHEET 2 AC4 4 THR F 142 TYR F 152 -1 O GLY F 146 N LEU F 131 SHEET 3 AC4 4 TYR F 183 PRO F 192 -1 O VAL F 191 N ALA F 143 SHEET 4 AC4 4 VAL F 170 THR F 172 -1 N HIS F 171 O VAL F 188 SHEET 1 AC5 4 SER F 127 LEU F 131 0 SHEET 2 AC5 4 THR F 142 TYR F 152 -1 O GLY F 146 N LEU F 131 SHEET 3 AC5 4 TYR F 183 PRO F 192 -1 O VAL F 191 N ALA F 143 SHEET 4 AC5 4 VAL F 176 LEU F 177 -1 N VAL F 176 O SER F 184 SHEET 1 AC6 3 THR F 158 TRP F 161 0 SHEET 2 AC6 3 TYR F 201 HIS F 207 -1 O ASN F 206 N THR F 158 SHEET 3 AC6 3 THR F 212 VAL F 218 -1 O VAL F 218 N TYR F 201 SSBOND 1 CYS B 22 CYS B 90 1555 1555 2.02 SSBOND 2 CYS B 138 CYS B 197 1555 1555 1.98 SSBOND 3 CYS D 22 CYS D 96 1555 1555 1.94 SSBOND 4 CYS D 147 CYS D 203 1555 1555 2.00 SSBOND 5 CYS E 22 CYS E 90 1555 1555 2.00 SSBOND 6 CYS E 138 CYS E 197 1555 1555 2.03 SSBOND 7 CYS F 22 CYS F 96 1555 1555 2.01 SSBOND 8 CYS F 147 CYS F 203 1555 1555 2.03 LINK C PCA D 1 N VAL D 2 1555 1555 1.31 LINK C PCA F 1 N VAL F 2 1555 1555 1.34 CISPEP 1 TYR B 144 PRO B 145 0 0.76 CISPEP 2 PRO D 101 PRO D 102 0 5.48 CISPEP 3 PHE D 153 PRO D 154 0 -5.66 CISPEP 4 GLU D 155 PRO D 156 0 -0.31 CISPEP 5 TYR E 144 PRO E 145 0 0.39 CISPEP 6 PRO F 101 PRO F 102 0 4.65 CISPEP 7 PHE F 153 PRO F 154 0 -3.65 CISPEP 8 GLU F 155 PRO F 156 0 -0.06 CRYST1 73.906 72.703 86.264 90.00 109.54 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013531 0.000000 0.004802 0.00000 SCALE2 0.000000 0.013755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012301 0.00000