data_7YJL # _entry.id 7YJL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.373 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YJL pdb_00007yjl 10.2210/pdb7yjl/pdb WWPDB D_1300031061 ? ? EMDB EMD-31529 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-31529 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YJL _pdbx_database_status.recvd_initial_deposition_date 2022-07-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Burton-Smith, R.N.' 1 ? 'Okamoto, K.' 2 ? 'Murata, K.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The 4.4A structure of the giant Melbournevirus virion belonging to the Marseilleviridae family' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Burton-Smith, R.N.' 1 ? primary 'Reddy, H.K.N.' 2 ? primary 'Svenda, M.' 3 ? primary 'Abergel, C.' 4 ? primary 'Okamoto, K.' 5 ? primary 'Murata, K.' 6 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7YJL _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7YJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Major capsid protein' _entity.formula_weight 50896.844 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VTAASGFVDLATFSDLEAYLYGGCSAVTYFVRAIKKANWFSFLPVVLRNISGLPGFGSEFSASVNRSGDYVLNTWLRVRL PLVAIRPTNTGGAINANATIRWTRNFMHNLVEKVNITFNDLIVHEFDSYWFDFNSQFNIDASKRVGYRNMIGDIPAMINP VTTGNPLGTGEFFNLPIPLFYTEDSGLALAVSALPFNDIKINYCLRRWQDLIVLNVGVGGNPPTYDDIVQVSYDSTFTLI YSSNAPAITNVETWCHYAVVHNDERVKMGKNPRDMVIKQVQKVNETTINLSQLNALVPIDIRVSHAVVGYFYAIRNSSTT GEWSNYTTEPAYAGLDPLEAAQLVYESTARVSNGSDYYSLMVPWYWHKSIPEETGYHAYSYSLDTFASDPKGSTNYSKLT NVSNQYVPSTAAVNASAGVTNTGIPIPSATNPAVTQQNQTFQHIFRVLNFNVLRLSGGS ; _entity_poly.pdbx_seq_one_letter_code_can ;VTAASGFVDLATFSDLEAYLYGGCSAVTYFVRAIKKANWFSFLPVVLRNISGLPGFGSEFSASVNRSGDYVLNTWLRVRL PLVAIRPTNTGGAINANATIRWTRNFMHNLVEKVNITFNDLIVHEFDSYWFDFNSQFNIDASKRVGYRNMIGDIPAMINP VTTGNPLGTGEFFNLPIPLFYTEDSGLALAVSALPFNDIKINYCLRRWQDLIVLNVGVGGNPPTYDDIVQVSYDSTFTLI YSSNAPAITNVETWCHYAVVHNDERVKMGKNPRDMVIKQVQKVNETTINLSQLNALVPIDIRVSHAVVGYFYAIRNSSTT GEWSNYTTEPAYAGLDPLEAAQLVYESTARVSNGSDYYSLMVPWYWHKSIPEETGYHAYSYSLDTFASDPKGSTNYSKLT NVSNQYVPSTAAVNASAGVTNTGIPIPSATNPAVTQQNQTFQHIFRVLNFNVLRLSGGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 ALA n 1 4 ALA n 1 5 SER n 1 6 GLY n 1 7 PHE n 1 8 VAL n 1 9 ASP n 1 10 LEU n 1 11 ALA n 1 12 THR n 1 13 PHE n 1 14 SER n 1 15 ASP n 1 16 LEU n 1 17 GLU n 1 18 ALA n 1 19 TYR n 1 20 LEU n 1 21 TYR n 1 22 GLY n 1 23 GLY n 1 24 CYS n 1 25 SER n 1 26 ALA n 1 27 VAL n 1 28 THR n 1 29 TYR n 1 30 PHE n 1 31 VAL n 1 32 ARG n 1 33 ALA n 1 34 ILE n 1 35 LYS n 1 36 LYS n 1 37 ALA n 1 38 ASN n 1 39 TRP n 1 40 PHE n 1 41 SER n 1 42 PHE n 1 43 LEU n 1 44 PRO n 1 45 VAL n 1 46 VAL n 1 47 LEU n 1 48 ARG n 1 49 ASN n 1 50 ILE n 1 51 SER n 1 52 GLY n 1 53 LEU n 1 54 PRO n 1 55 GLY n 1 56 PHE n 1 57 GLY n 1 58 SER n 1 59 GLU n 1 60 PHE n 1 61 SER n 1 62 ALA n 1 63 SER n 1 64 VAL n 1 65 ASN n 1 66 ARG n 1 67 SER n 1 68 GLY n 1 69 ASP n 1 70 TYR n 1 71 VAL n 1 72 LEU n 1 73 ASN n 1 74 THR n 1 75 TRP n 1 76 LEU n 1 77 ARG n 1 78 VAL n 1 79 ARG n 1 80 LEU n 1 81 PRO n 1 82 LEU n 1 83 VAL n 1 84 ALA n 1 85 ILE n 1 86 ARG n 1 87 PRO n 1 88 THR n 1 89 ASN n 1 90 THR n 1 91 GLY n 1 92 GLY n 1 93 ALA n 1 94 ILE n 1 95 ASN n 1 96 ALA n 1 97 ASN n 1 98 ALA n 1 99 THR n 1 100 ILE n 1 101 ARG n 1 102 TRP n 1 103 THR n 1 104 ARG n 1 105 ASN n 1 106 PHE n 1 107 MET n 1 108 HIS n 1 109 ASN n 1 110 LEU n 1 111 VAL n 1 112 GLU n 1 113 LYS n 1 114 VAL n 1 115 ASN n 1 116 ILE n 1 117 THR n 1 118 PHE n 1 119 ASN n 1 120 ASP n 1 121 LEU n 1 122 ILE n 1 123 VAL n 1 124 HIS n 1 125 GLU n 1 126 PHE n 1 127 ASP n 1 128 SER n 1 129 TYR n 1 130 TRP n 1 131 PHE n 1 132 ASP n 1 133 PHE n 1 134 ASN n 1 135 SER n 1 136 GLN n 1 137 PHE n 1 138 ASN n 1 139 ILE n 1 140 ASP n 1 141 ALA n 1 142 SER n 1 143 LYS n 1 144 ARG n 1 145 VAL n 1 146 GLY n 1 147 TYR n 1 148 ARG n 1 149 ASN n 1 150 MET n 1 151 ILE n 1 152 GLY n 1 153 ASP n 1 154 ILE n 1 155 PRO n 1 156 ALA n 1 157 MET n 1 158 ILE n 1 159 ASN n 1 160 PRO n 1 161 VAL n 1 162 THR n 1 163 THR n 1 164 GLY n 1 165 ASN n 1 166 PRO n 1 167 LEU n 1 168 GLY n 1 169 THR n 1 170 GLY n 1 171 GLU n 1 172 PHE n 1 173 PHE n 1 174 ASN n 1 175 LEU n 1 176 PRO n 1 177 ILE n 1 178 PRO n 1 179 LEU n 1 180 PHE n 1 181 TYR n 1 182 THR n 1 183 GLU n 1 184 ASP n 1 185 SER n 1 186 GLY n 1 187 LEU n 1 188 ALA n 1 189 LEU n 1 190 ALA n 1 191 VAL n 1 192 SER n 1 193 ALA n 1 194 LEU n 1 195 PRO n 1 196 PHE n 1 197 ASN n 1 198 ASP n 1 199 ILE n 1 200 LYS n 1 201 ILE n 1 202 ASN n 1 203 TYR n 1 204 CYS n 1 205 LEU n 1 206 ARG n 1 207 ARG n 1 208 TRP n 1 209 GLN n 1 210 ASP n 1 211 LEU n 1 212 ILE n 1 213 VAL n 1 214 LEU n 1 215 ASN n 1 216 VAL n 1 217 GLY n 1 218 VAL n 1 219 GLY n 1 220 GLY n 1 221 ASN n 1 222 PRO n 1 223 PRO n 1 224 THR n 1 225 TYR n 1 226 ASP n 1 227 ASP n 1 228 ILE n 1 229 VAL n 1 230 GLN n 1 231 VAL n 1 232 SER n 1 233 TYR n 1 234 ASP n 1 235 SER n 1 236 THR n 1 237 PHE n 1 238 THR n 1 239 LEU n 1 240 ILE n 1 241 TYR n 1 242 SER n 1 243 SER n 1 244 ASN n 1 245 ALA n 1 246 PRO n 1 247 ALA n 1 248 ILE n 1 249 THR n 1 250 ASN n 1 251 VAL n 1 252 GLU n 1 253 THR n 1 254 TRP n 1 255 CYS n 1 256 HIS n 1 257 TYR n 1 258 ALA n 1 259 VAL n 1 260 VAL n 1 261 HIS n 1 262 ASN n 1 263 ASP n 1 264 GLU n 1 265 ARG n 1 266 VAL n 1 267 LYS n 1 268 MET n 1 269 GLY n 1 270 LYS n 1 271 ASN n 1 272 PRO n 1 273 ARG n 1 274 ASP n 1 275 MET n 1 276 VAL n 1 277 ILE n 1 278 LYS n 1 279 GLN n 1 280 VAL n 1 281 GLN n 1 282 LYS n 1 283 VAL n 1 284 ASN n 1 285 GLU n 1 286 THR n 1 287 THR n 1 288 ILE n 1 289 ASN n 1 290 LEU n 1 291 SER n 1 292 GLN n 1 293 LEU n 1 294 ASN n 1 295 ALA n 1 296 LEU n 1 297 VAL n 1 298 PRO n 1 299 ILE n 1 300 ASP n 1 301 ILE n 1 302 ARG n 1 303 VAL n 1 304 SER n 1 305 HIS n 1 306 ALA n 1 307 VAL n 1 308 VAL n 1 309 GLY n 1 310 TYR n 1 311 PHE n 1 312 TYR n 1 313 ALA n 1 314 ILE n 1 315 ARG n 1 316 ASN n 1 317 SER n 1 318 SER n 1 319 THR n 1 320 THR n 1 321 GLY n 1 322 GLU n 1 323 TRP n 1 324 SER n 1 325 ASN n 1 326 TYR n 1 327 THR n 1 328 THR n 1 329 GLU n 1 330 PRO n 1 331 ALA n 1 332 TYR n 1 333 ALA n 1 334 GLY n 1 335 LEU n 1 336 ASP n 1 337 PRO n 1 338 LEU n 1 339 GLU n 1 340 ALA n 1 341 ALA n 1 342 GLN n 1 343 LEU n 1 344 VAL n 1 345 TYR n 1 346 GLU n 1 347 SER n 1 348 THR n 1 349 ALA n 1 350 ARG n 1 351 VAL n 1 352 SER n 1 353 ASN n 1 354 GLY n 1 355 SER n 1 356 ASP n 1 357 TYR n 1 358 TYR n 1 359 SER n 1 360 LEU n 1 361 MET n 1 362 VAL n 1 363 PRO n 1 364 TRP n 1 365 TYR n 1 366 TRP n 1 367 HIS n 1 368 LYS n 1 369 SER n 1 370 ILE n 1 371 PRO n 1 372 GLU n 1 373 GLU n 1 374 THR n 1 375 GLY n 1 376 TYR n 1 377 HIS n 1 378 ALA n 1 379 TYR n 1 380 SER n 1 381 TYR n 1 382 SER n 1 383 LEU n 1 384 ASP n 1 385 THR n 1 386 PHE n 1 387 ALA n 1 388 SER n 1 389 ASP n 1 390 PRO n 1 391 LYS n 1 392 GLY n 1 393 SER n 1 394 THR n 1 395 ASN n 1 396 TYR n 1 397 SER n 1 398 LYS n 1 399 LEU n 1 400 THR n 1 401 ASN n 1 402 VAL n 1 403 SER n 1 404 ASN n 1 405 GLN n 1 406 TYR n 1 407 VAL n 1 408 PRO n 1 409 SER n 1 410 THR n 1 411 ALA n 1 412 ALA n 1 413 VAL n 1 414 ASN n 1 415 ALA n 1 416 SER n 1 417 ALA n 1 418 GLY n 1 419 VAL n 1 420 THR n 1 421 ASN n 1 422 THR n 1 423 GLY n 1 424 ILE n 1 425 PRO n 1 426 ILE n 1 427 PRO n 1 428 SER n 1 429 ALA n 1 430 THR n 1 431 ASN n 1 432 PRO n 1 433 ALA n 1 434 VAL n 1 435 THR n 1 436 GLN n 1 437 GLN n 1 438 ASN n 1 439 GLN n 1 440 THR n 1 441 PHE n 1 442 GLN n 1 443 HIS n 1 444 ILE n 1 445 PHE n 1 446 ARG n 1 447 VAL n 1 448 LEU n 1 449 ASN n 1 450 PHE n 1 451 ASN n 1 452 VAL n 1 453 LEU n 1 454 ARG n 1 455 LEU n 1 456 SER n 1 457 GLY n 1 458 GLY n 1 459 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 459 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific Melbournevirus _entity_src_nat.pdbx_ncbi_taxonomy_id 1560514 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A097I267_9VIRU _struct_ref.pdbx_db_accession A0A097I267 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VTAASGFVDLATFSDLEAYLYGGCSAVTYFVRAIKKANWFSFLPVVLRNISGLPGFGSEFSASVNRSGDYVLNTWLRVRL PLVAIRPTNTGGAINANATIRWTRNFMHNLVEKVNITFNDLIVHEFDSYWFDFNSQFNIDASKRVGYRNMIGDIPAMINP VTTGNPLGTGEFFNLPIPLFYTEDSGLALAVSALPFNDIKINYCLRRWQDLIVLNVGVGGNPPTYDDIVQVSYDSTFTLI YSSNAPAITNVETWCHYAVVHNDERVKMGKNPRDMVIKQVQKVNETTINLSQLNALVPIDIRVSHAVVGYFYAIRNSSTT GEWSNYTTEPAYAGLDPLEAAQLVYESTARVSNGSDYYSLMVPWYWHKSIPEETGYHAYSYSLDTFASDPKGSTNYSKLT NVSNQYVPSTAAVNASAGVTNTGIPIPSATNPAVTQQNQTFQHIFRVLNFNVLRLSGGS ; _struct_ref.pdbx_align_begin 10 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7YJL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 459 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A097I267 _struct_ref_seq.db_align_beg 10 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 468 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 10 _struct_ref_seq.pdbx_auth_seq_align_end 468 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YJL _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7YJL _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.007 ? 7180 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.863 ? 12903 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 16.095 ? 2931 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.051 ? 568 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 1089 ? f_plane_restr ? ? # _struct.entry_id 7YJL _struct.title 'Melbournevirus major capsid protein built from 4.4A reconstruction' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YJL _struct_keywords.text 'MCP, Melbournevirus, giant virus, major capsid protein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 8 ? THR A 12 ? VAL A 17 THR A 21 5 ? 5 HELX_P HELX_P2 AA2 SER A 14 ? TYR A 21 ? SER A 23 TYR A 30 1 ? 8 HELX_P HELX_P3 AA3 PHE A 106 ? VAL A 111 ? PHE A 115 VAL A 120 1 ? 6 HELX_P HELX_P4 AA4 ASP A 127 ? SER A 135 ? ASP A 136 SER A 144 1 ? 9 HELX_P HELX_P5 AA5 LYS A 143 ? MET A 150 ? LYS A 152 MET A 159 1 ? 8 HELX_P HELX_P6 AA6 ALA A 188 ? ALA A 193 ? ALA A 197 ALA A 202 1 ? 6 HELX_P HELX_P7 AA7 ARG A 207 ? ILE A 212 ? ARG A 216 ILE A 221 1 ? 6 HELX_P HELX_P8 AA8 HIS A 261 ? LYS A 270 ? HIS A 270 LYS A 279 1 ? 10 HELX_P HELX_P9 AA9 SER A 355 ? LEU A 360 ? SER A 364 LEU A 369 1 ? 6 HELX_P HELX_P10 AB1 SER A 409 ? ALA A 417 ? SER A 418 ALA A 426 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 2 ? AA8 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 45 ? VAL A 46 ? VAL A 54 VAL A 55 AA1 2 GLU A 252 ? CYS A 255 ? GLU A 261 CYS A 264 AA1 3 TRP A 75 ? LEU A 80 ? TRP A 84 LEU A 89 AA1 4 GLU A 171 ? PRO A 176 ? GLU A 180 PRO A 185 AA2 1 VAL A 83 ? ALA A 84 ? VAL A 92 ALA A 93 AA2 2 VAL A 229 ? GLN A 230 ? VAL A 238 GLN A 239 AA3 1 ASN A 115 ? THR A 117 ? ASN A 124 THR A 126 AA3 2 LYS A 200 ? ASN A 202 ? LYS A 209 ASN A 211 AA4 1 SER A 232 ? TYR A 233 ? SER A 241 TYR A 242 AA4 2 LEU A 239 ? ILE A 240 ? LEU A 248 ILE A 249 AA5 1 ARG A 273 ? LYS A 278 ? ARG A 282 LYS A 287 AA5 2 PHE A 450 ? LEU A 455 ? PHE A 459 LEU A 464 AA6 1 THR A 286 ? THR A 287 ? THR A 295 THR A 296 AA6 2 GLN A 442 ? ARG A 446 ? GLN A 451 ARG A 455 AA6 3 TYR A 310 ? ARG A 315 ? TYR A 319 ARG A 324 AA6 4 ALA A 378 ? TYR A 379 ? ALA A 387 TYR A 388 AA7 1 ILE A 299 ? ASP A 300 ? ILE A 308 ASP A 309 AA7 2 ASN A 404 ? GLN A 405 ? ASN A 413 GLN A 414 AA8 1 VAL A 419 ? THR A 420 ? VAL A 428 THR A 429 AA8 2 ILE A 424 ? PRO A 425 ? ILE A 433 PRO A 434 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 45 ? N VAL A 54 O CYS A 255 ? O CYS A 264 AA1 2 3 O GLU A 252 ? O GLU A 261 N ARG A 77 ? N ARG A 86 AA1 3 4 N LEU A 76 ? N LEU A 85 O LEU A 175 ? O LEU A 184 AA2 1 2 N ALA A 84 ? N ALA A 93 O VAL A 229 ? O VAL A 238 AA3 1 2 N ASN A 115 ? N ASN A 124 O ASN A 202 ? O ASN A 211 AA4 1 2 N SER A 232 ? N SER A 241 O ILE A 240 ? O ILE A 249 AA5 1 2 N MET A 275 ? N MET A 284 O LEU A 453 ? O LEU A 462 AA6 1 2 N THR A 286 ? N THR A 295 O HIS A 443 ? O HIS A 452 AA6 2 3 O ARG A 446 ? O ARG A 455 N PHE A 311 ? N PHE A 320 AA6 3 4 N TYR A 310 ? N TYR A 319 O TYR A 379 ? O TYR A 388 AA7 1 2 N ASP A 300 ? N ASP A 309 O ASN A 404 ? O ASN A 413 AA8 1 2 N THR A 420 ? N THR A 429 O ILE A 424 ? O ILE A 433 # _atom_sites.entry_id 7YJL _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 10 10 VAL VAL A . n A 1 2 THR 2 11 11 THR THR A . n A 1 3 ALA 3 12 12 ALA ALA A . n A 1 4 ALA 4 13 13 ALA ALA A . n A 1 5 SER 5 14 14 SER SER A . n A 1 6 GLY 6 15 15 GLY GLY A . n A 1 7 PHE 7 16 16 PHE PHE A . n A 1 8 VAL 8 17 17 VAL VAL A . n A 1 9 ASP 9 18 18 ASP ASP A . n A 1 10 LEU 10 19 19 LEU LEU A . n A 1 11 ALA 11 20 20 ALA ALA A . n A 1 12 THR 12 21 21 THR THR A . n A 1 13 PHE 13 22 22 PHE PHE A . n A 1 14 SER 14 23 23 SER SER A . n A 1 15 ASP 15 24 24 ASP ASP A . n A 1 16 LEU 16 25 25 LEU LEU A . n A 1 17 GLU 17 26 26 GLU GLU A . n A 1 18 ALA 18 27 27 ALA ALA A . n A 1 19 TYR 19 28 28 TYR TYR A . n A 1 20 LEU 20 29 29 LEU LEU A . n A 1 21 TYR 21 30 30 TYR TYR A . n A 1 22 GLY 22 31 31 GLY GLY A . n A 1 23 GLY 23 32 32 GLY GLY A . n A 1 24 CYS 24 33 33 CYS CYS A . n A 1 25 SER 25 34 34 SER SER A . n A 1 26 ALA 26 35 35 ALA ALA A . n A 1 27 VAL 27 36 36 VAL VAL A . n A 1 28 THR 28 37 37 THR THR A . n A 1 29 TYR 29 38 38 TYR TYR A . n A 1 30 PHE 30 39 39 PHE PHE A . n A 1 31 VAL 31 40 40 VAL VAL A . n A 1 32 ARG 32 41 41 ARG ARG A . n A 1 33 ALA 33 42 42 ALA ALA A . n A 1 34 ILE 34 43 43 ILE ILE A . n A 1 35 LYS 35 44 44 LYS LYS A . n A 1 36 LYS 36 45 45 LYS LYS A . n A 1 37 ALA 37 46 46 ALA ALA A . n A 1 38 ASN 38 47 47 ASN ASN A . n A 1 39 TRP 39 48 48 TRP TRP A . n A 1 40 PHE 40 49 49 PHE PHE A . n A 1 41 SER 41 50 50 SER SER A . n A 1 42 PHE 42 51 51 PHE PHE A . n A 1 43 LEU 43 52 52 LEU LEU A . n A 1 44 PRO 44 53 53 PRO PRO A . n A 1 45 VAL 45 54 54 VAL VAL A . n A 1 46 VAL 46 55 55 VAL VAL A . n A 1 47 LEU 47 56 56 LEU LEU A . n A 1 48 ARG 48 57 57 ARG ARG A . n A 1 49 ASN 49 58 58 ASN ASN A . n A 1 50 ILE 50 59 59 ILE ILE A . n A 1 51 SER 51 60 60 SER SER A . n A 1 52 GLY 52 61 61 GLY GLY A . n A 1 53 LEU 53 62 62 LEU LEU A . n A 1 54 PRO 54 63 63 PRO PRO A . n A 1 55 GLY 55 64 64 GLY GLY A . n A 1 56 PHE 56 65 65 PHE PHE A . n A 1 57 GLY 57 66 66 GLY GLY A . n A 1 58 SER 58 67 67 SER SER A . n A 1 59 GLU 59 68 68 GLU GLU A . n A 1 60 PHE 60 69 69 PHE PHE A . n A 1 61 SER 61 70 70 SER SER A . n A 1 62 ALA 62 71 71 ALA ALA A . n A 1 63 SER 63 72 72 SER SER A . n A 1 64 VAL 64 73 73 VAL VAL A . n A 1 65 ASN 65 74 74 ASN ASN A . n A 1 66 ARG 66 75 75 ARG ARG A . n A 1 67 SER 67 76 76 SER SER A . n A 1 68 GLY 68 77 77 GLY GLY A . n A 1 69 ASP 69 78 78 ASP ASP A . n A 1 70 TYR 70 79 79 TYR TYR A . n A 1 71 VAL 71 80 80 VAL VAL A . n A 1 72 LEU 72 81 81 LEU LEU A . n A 1 73 ASN 73 82 82 ASN ASN A . n A 1 74 THR 74 83 83 THR THR A . n A 1 75 TRP 75 84 84 TRP TRP A . n A 1 76 LEU 76 85 85 LEU LEU A . n A 1 77 ARG 77 86 86 ARG ARG A . n A 1 78 VAL 78 87 87 VAL VAL A . n A 1 79 ARG 79 88 88 ARG ARG A . n A 1 80 LEU 80 89 89 LEU LEU A . n A 1 81 PRO 81 90 90 PRO PRO A . n A 1 82 LEU 82 91 91 LEU LEU A . n A 1 83 VAL 83 92 92 VAL VAL A . n A 1 84 ALA 84 93 93 ALA ALA A . n A 1 85 ILE 85 94 94 ILE ILE A . n A 1 86 ARG 86 95 95 ARG ARG A . n A 1 87 PRO 87 96 96 PRO PRO A . n A 1 88 THR 88 97 97 THR THR A . n A 1 89 ASN 89 98 98 ASN ASN A . n A 1 90 THR 90 99 99 THR THR A . n A 1 91 GLY 91 100 100 GLY GLY A . n A 1 92 GLY 92 101 101 GLY GLY A . n A 1 93 ALA 93 102 102 ALA ALA A . n A 1 94 ILE 94 103 103 ILE ILE A . n A 1 95 ASN 95 104 104 ASN ASN A . n A 1 96 ALA 96 105 105 ALA ALA A . n A 1 97 ASN 97 106 106 ASN ASN A . n A 1 98 ALA 98 107 107 ALA ALA A . n A 1 99 THR 99 108 108 THR THR A . n A 1 100 ILE 100 109 109 ILE ILE A . n A 1 101 ARG 101 110 110 ARG ARG A . n A 1 102 TRP 102 111 111 TRP TRP A . n A 1 103 THR 103 112 112 THR THR A . n A 1 104 ARG 104 113 113 ARG ARG A . n A 1 105 ASN 105 114 114 ASN ASN A . n A 1 106 PHE 106 115 115 PHE PHE A . n A 1 107 MET 107 116 116 MET MET A . n A 1 108 HIS 108 117 117 HIS HIS A . n A 1 109 ASN 109 118 118 ASN ASN A . n A 1 110 LEU 110 119 119 LEU LEU A . n A 1 111 VAL 111 120 120 VAL VAL A . n A 1 112 GLU 112 121 121 GLU GLU A . n A 1 113 LYS 113 122 122 LYS LYS A . n A 1 114 VAL 114 123 123 VAL VAL A . n A 1 115 ASN 115 124 124 ASN ASN A . n A 1 116 ILE 116 125 125 ILE ILE A . n A 1 117 THR 117 126 126 THR THR A . n A 1 118 PHE 118 127 127 PHE PHE A . n A 1 119 ASN 119 128 128 ASN ASN A . n A 1 120 ASP 120 129 129 ASP ASP A . n A 1 121 LEU 121 130 130 LEU LEU A . n A 1 122 ILE 122 131 131 ILE ILE A . n A 1 123 VAL 123 132 132 VAL VAL A . n A 1 124 HIS 124 133 133 HIS HIS A . n A 1 125 GLU 125 134 134 GLU GLU A . n A 1 126 PHE 126 135 135 PHE PHE A . n A 1 127 ASP 127 136 136 ASP ASP A . n A 1 128 SER 128 137 137 SER SER A . n A 1 129 TYR 129 138 138 TYR TYR A . n A 1 130 TRP 130 139 139 TRP TRP A . n A 1 131 PHE 131 140 140 PHE PHE A . n A 1 132 ASP 132 141 141 ASP ASP A . n A 1 133 PHE 133 142 142 PHE PHE A . n A 1 134 ASN 134 143 143 ASN ASN A . n A 1 135 SER 135 144 144 SER SER A . n A 1 136 GLN 136 145 145 GLN GLN A . n A 1 137 PHE 137 146 146 PHE PHE A . n A 1 138 ASN 138 147 147 ASN ASN A . n A 1 139 ILE 139 148 148 ILE ILE A . n A 1 140 ASP 140 149 149 ASP ASP A . n A 1 141 ALA 141 150 150 ALA ALA A . n A 1 142 SER 142 151 151 SER SER A . n A 1 143 LYS 143 152 152 LYS LYS A . n A 1 144 ARG 144 153 153 ARG ARG A . n A 1 145 VAL 145 154 154 VAL VAL A . n A 1 146 GLY 146 155 155 GLY GLY A . n A 1 147 TYR 147 156 156 TYR TYR A . n A 1 148 ARG 148 157 157 ARG ARG A . n A 1 149 ASN 149 158 158 ASN ASN A . n A 1 150 MET 150 159 159 MET MET A . n A 1 151 ILE 151 160 160 ILE ILE A . n A 1 152 GLY 152 161 161 GLY GLY A . n A 1 153 ASP 153 162 162 ASP ASP A . n A 1 154 ILE 154 163 163 ILE ILE A . n A 1 155 PRO 155 164 164 PRO PRO A . n A 1 156 ALA 156 165 165 ALA ALA A . n A 1 157 MET 157 166 166 MET MET A . n A 1 158 ILE 158 167 167 ILE ILE A . n A 1 159 ASN 159 168 168 ASN ASN A . n A 1 160 PRO 160 169 169 PRO PRO A . n A 1 161 VAL 161 170 170 VAL VAL A . n A 1 162 THR 162 171 171 THR THR A . n A 1 163 THR 163 172 172 THR THR A . n A 1 164 GLY 164 173 173 GLY GLY A . n A 1 165 ASN 165 174 174 ASN ASN A . n A 1 166 PRO 166 175 175 PRO PRO A . n A 1 167 LEU 167 176 176 LEU LEU A . n A 1 168 GLY 168 177 177 GLY GLY A . n A 1 169 THR 169 178 178 THR THR A . n A 1 170 GLY 170 179 179 GLY GLY A . n A 1 171 GLU 171 180 180 GLU GLU A . n A 1 172 PHE 172 181 181 PHE PHE A . n A 1 173 PHE 173 182 182 PHE PHE A . n A 1 174 ASN 174 183 183 ASN ASN A . n A 1 175 LEU 175 184 184 LEU LEU A . n A 1 176 PRO 176 185 185 PRO PRO A . n A 1 177 ILE 177 186 186 ILE ILE A . n A 1 178 PRO 178 187 187 PRO PRO A . n A 1 179 LEU 179 188 188 LEU LEU A . n A 1 180 PHE 180 189 189 PHE PHE A . n A 1 181 TYR 181 190 190 TYR TYR A . n A 1 182 THR 182 191 191 THR THR A . n A 1 183 GLU 183 192 192 GLU GLU A . n A 1 184 ASP 184 193 193 ASP ASP A . n A 1 185 SER 185 194 194 SER SER A . n A 1 186 GLY 186 195 195 GLY GLY A . n A 1 187 LEU 187 196 196 LEU LEU A . n A 1 188 ALA 188 197 197 ALA ALA A . n A 1 189 LEU 189 198 198 LEU LEU A . n A 1 190 ALA 190 199 199 ALA ALA A . n A 1 191 VAL 191 200 200 VAL VAL A . n A 1 192 SER 192 201 201 SER SER A . n A 1 193 ALA 193 202 202 ALA ALA A . n A 1 194 LEU 194 203 203 LEU LEU A . n A 1 195 PRO 195 204 204 PRO PRO A . n A 1 196 PHE 196 205 205 PHE PHE A . n A 1 197 ASN 197 206 206 ASN ASN A . n A 1 198 ASP 198 207 207 ASP ASP A . n A 1 199 ILE 199 208 208 ILE ILE A . n A 1 200 LYS 200 209 209 LYS LYS A . n A 1 201 ILE 201 210 210 ILE ILE A . n A 1 202 ASN 202 211 211 ASN ASN A . n A 1 203 TYR 203 212 212 TYR TYR A . n A 1 204 CYS 204 213 213 CYS CYS A . n A 1 205 LEU 205 214 214 LEU LEU A . n A 1 206 ARG 206 215 215 ARG ARG A . n A 1 207 ARG 207 216 216 ARG ARG A . n A 1 208 TRP 208 217 217 TRP TRP A . n A 1 209 GLN 209 218 218 GLN GLN A . n A 1 210 ASP 210 219 219 ASP ASP A . n A 1 211 LEU 211 220 220 LEU LEU A . n A 1 212 ILE 212 221 221 ILE ILE A . n A 1 213 VAL 213 222 222 VAL VAL A . n A 1 214 LEU 214 223 223 LEU LEU A . n A 1 215 ASN 215 224 224 ASN ASN A . n A 1 216 VAL 216 225 225 VAL VAL A . n A 1 217 GLY 217 226 226 GLY GLY A . n A 1 218 VAL 218 227 227 VAL VAL A . n A 1 219 GLY 219 228 228 GLY GLY A . n A 1 220 GLY 220 229 229 GLY GLY A . n A 1 221 ASN 221 230 230 ASN ASN A . n A 1 222 PRO 222 231 231 PRO PRO A . n A 1 223 PRO 223 232 232 PRO PRO A . n A 1 224 THR 224 233 233 THR THR A . n A 1 225 TYR 225 234 234 TYR TYR A . n A 1 226 ASP 226 235 235 ASP ASP A . n A 1 227 ASP 227 236 236 ASP ASP A . n A 1 228 ILE 228 237 237 ILE ILE A . n A 1 229 VAL 229 238 238 VAL VAL A . n A 1 230 GLN 230 239 239 GLN GLN A . n A 1 231 VAL 231 240 240 VAL VAL A . n A 1 232 SER 232 241 241 SER SER A . n A 1 233 TYR 233 242 242 TYR TYR A . n A 1 234 ASP 234 243 243 ASP ASP A . n A 1 235 SER 235 244 244 SER SER A . n A 1 236 THR 236 245 245 THR THR A . n A 1 237 PHE 237 246 246 PHE PHE A . n A 1 238 THR 238 247 247 THR THR A . n A 1 239 LEU 239 248 248 LEU LEU A . n A 1 240 ILE 240 249 249 ILE ILE A . n A 1 241 TYR 241 250 250 TYR TYR A . n A 1 242 SER 242 251 251 SER SER A . n A 1 243 SER 243 252 252 SER SER A . n A 1 244 ASN 244 253 253 ASN ASN A . n A 1 245 ALA 245 254 254 ALA ALA A . n A 1 246 PRO 246 255 255 PRO PRO A . n A 1 247 ALA 247 256 256 ALA ALA A . n A 1 248 ILE 248 257 257 ILE ILE A . n A 1 249 THR 249 258 258 THR THR A . n A 1 250 ASN 250 259 259 ASN ASN A . n A 1 251 VAL 251 260 260 VAL VAL A . n A 1 252 GLU 252 261 261 GLU GLU A . n A 1 253 THR 253 262 262 THR THR A . n A 1 254 TRP 254 263 263 TRP TRP A . n A 1 255 CYS 255 264 264 CYS CYS A . n A 1 256 HIS 256 265 265 HIS HIS A . n A 1 257 TYR 257 266 266 TYR TYR A . n A 1 258 ALA 258 267 267 ALA ALA A . n A 1 259 VAL 259 268 268 VAL VAL A . n A 1 260 VAL 260 269 269 VAL VAL A . n A 1 261 HIS 261 270 270 HIS HIS A . n A 1 262 ASN 262 271 271 ASN ASN A . n A 1 263 ASP 263 272 272 ASP ASP A . n A 1 264 GLU 264 273 273 GLU GLU A . n A 1 265 ARG 265 274 274 ARG ARG A . n A 1 266 VAL 266 275 275 VAL VAL A . n A 1 267 LYS 267 276 276 LYS LYS A . n A 1 268 MET 268 277 277 MET MET A . n A 1 269 GLY 269 278 278 GLY GLY A . n A 1 270 LYS 270 279 279 LYS LYS A . n A 1 271 ASN 271 280 280 ASN ASN A . n A 1 272 PRO 272 281 281 PRO PRO A . n A 1 273 ARG 273 282 282 ARG ARG A . n A 1 274 ASP 274 283 283 ASP ASP A . n A 1 275 MET 275 284 284 MET MET A . n A 1 276 VAL 276 285 285 VAL VAL A . n A 1 277 ILE 277 286 286 ILE ILE A . n A 1 278 LYS 278 287 287 LYS LYS A . n A 1 279 GLN 279 288 288 GLN GLN A . n A 1 280 VAL 280 289 289 VAL VAL A . n A 1 281 GLN 281 290 290 GLN GLN A . n A 1 282 LYS 282 291 291 LYS LYS A . n A 1 283 VAL 283 292 292 VAL VAL A . n A 1 284 ASN 284 293 293 ASN ASN A . n A 1 285 GLU 285 294 294 GLU GLU A . n A 1 286 THR 286 295 295 THR THR A . n A 1 287 THR 287 296 296 THR THR A . n A 1 288 ILE 288 297 297 ILE ILE A . n A 1 289 ASN 289 298 298 ASN ASN A . n A 1 290 LEU 290 299 299 LEU LEU A . n A 1 291 SER 291 300 300 SER SER A . n A 1 292 GLN 292 301 301 GLN GLN A . n A 1 293 LEU 293 302 302 LEU LEU A . n A 1 294 ASN 294 303 303 ASN ASN A . n A 1 295 ALA 295 304 304 ALA ALA A . n A 1 296 LEU 296 305 305 LEU LEU A . n A 1 297 VAL 297 306 306 VAL VAL A . n A 1 298 PRO 298 307 307 PRO PRO A . n A 1 299 ILE 299 308 308 ILE ILE A . n A 1 300 ASP 300 309 309 ASP ASP A . n A 1 301 ILE 301 310 310 ILE ILE A . n A 1 302 ARG 302 311 311 ARG ARG A . n A 1 303 VAL 303 312 312 VAL VAL A . n A 1 304 SER 304 313 313 SER SER A . n A 1 305 HIS 305 314 314 HIS HIS A . n A 1 306 ALA 306 315 315 ALA ALA A . n A 1 307 VAL 307 316 316 VAL VAL A . n A 1 308 VAL 308 317 317 VAL VAL A . n A 1 309 GLY 309 318 318 GLY GLY A . n A 1 310 TYR 310 319 319 TYR TYR A . n A 1 311 PHE 311 320 320 PHE PHE A . n A 1 312 TYR 312 321 321 TYR TYR A . n A 1 313 ALA 313 322 322 ALA ALA A . n A 1 314 ILE 314 323 323 ILE ILE A . n A 1 315 ARG 315 324 324 ARG ARG A . n A 1 316 ASN 316 325 325 ASN ASN A . n A 1 317 SER 317 326 326 SER SER A . n A 1 318 SER 318 327 327 SER SER A . n A 1 319 THR 319 328 328 THR THR A . n A 1 320 THR 320 329 329 THR THR A . n A 1 321 GLY 321 330 330 GLY GLY A . n A 1 322 GLU 322 331 331 GLU GLU A . n A 1 323 TRP 323 332 332 TRP TRP A . n A 1 324 SER 324 333 333 SER SER A . n A 1 325 ASN 325 334 334 ASN ASN A . n A 1 326 TYR 326 335 335 TYR TYR A . n A 1 327 THR 327 336 336 THR THR A . n A 1 328 THR 328 337 337 THR THR A . n A 1 329 GLU 329 338 338 GLU GLU A . n A 1 330 PRO 330 339 339 PRO PRO A . n A 1 331 ALA 331 340 340 ALA ALA A . n A 1 332 TYR 332 341 341 TYR TYR A . n A 1 333 ALA 333 342 342 ALA ALA A . n A 1 334 GLY 334 343 343 GLY GLY A . n A 1 335 LEU 335 344 344 LEU LEU A . n A 1 336 ASP 336 345 345 ASP ASP A . n A 1 337 PRO 337 346 346 PRO PRO A . n A 1 338 LEU 338 347 347 LEU LEU A . n A 1 339 GLU 339 348 348 GLU GLU A . n A 1 340 ALA 340 349 349 ALA ALA A . n A 1 341 ALA 341 350 350 ALA ALA A . n A 1 342 GLN 342 351 351 GLN GLN A . n A 1 343 LEU 343 352 352 LEU LEU A . n A 1 344 VAL 344 353 353 VAL VAL A . n A 1 345 TYR 345 354 354 TYR TYR A . n A 1 346 GLU 346 355 355 GLU GLU A . n A 1 347 SER 347 356 356 SER SER A . n A 1 348 THR 348 357 357 THR THR A . n A 1 349 ALA 349 358 358 ALA ALA A . n A 1 350 ARG 350 359 359 ARG ARG A . n A 1 351 VAL 351 360 360 VAL VAL A . n A 1 352 SER 352 361 361 SER SER A . n A 1 353 ASN 353 362 362 ASN ASN A . n A 1 354 GLY 354 363 363 GLY GLY A . n A 1 355 SER 355 364 364 SER SER A . n A 1 356 ASP 356 365 365 ASP ASP A . n A 1 357 TYR 357 366 366 TYR TYR A . n A 1 358 TYR 358 367 367 TYR TYR A . n A 1 359 SER 359 368 368 SER SER A . n A 1 360 LEU 360 369 369 LEU LEU A . n A 1 361 MET 361 370 370 MET MET A . n A 1 362 VAL 362 371 371 VAL VAL A . n A 1 363 PRO 363 372 372 PRO PRO A . n A 1 364 TRP 364 373 373 TRP TRP A . n A 1 365 TYR 365 374 374 TYR TYR A . n A 1 366 TRP 366 375 375 TRP TRP A . n A 1 367 HIS 367 376 376 HIS HIS A . n A 1 368 LYS 368 377 377 LYS LYS A . n A 1 369 SER 369 378 378 SER SER A . n A 1 370 ILE 370 379 379 ILE ILE A . n A 1 371 PRO 371 380 380 PRO PRO A . n A 1 372 GLU 372 381 381 GLU GLU A . n A 1 373 GLU 373 382 382 GLU GLU A . n A 1 374 THR 374 383 383 THR THR A . n A 1 375 GLY 375 384 384 GLY GLY A . n A 1 376 TYR 376 385 385 TYR TYR A . n A 1 377 HIS 377 386 386 HIS HIS A . n A 1 378 ALA 378 387 387 ALA ALA A . n A 1 379 TYR 379 388 388 TYR TYR A . n A 1 380 SER 380 389 389 SER SER A . n A 1 381 TYR 381 390 390 TYR TYR A . n A 1 382 SER 382 391 391 SER SER A . n A 1 383 LEU 383 392 392 LEU LEU A . n A 1 384 ASP 384 393 393 ASP ASP A . n A 1 385 THR 385 394 394 THR THR A . n A 1 386 PHE 386 395 395 PHE PHE A . n A 1 387 ALA 387 396 396 ALA ALA A . n A 1 388 SER 388 397 397 SER SER A . n A 1 389 ASP 389 398 398 ASP ASP A . n A 1 390 PRO 390 399 399 PRO PRO A . n A 1 391 LYS 391 400 400 LYS LYS A . n A 1 392 GLY 392 401 401 GLY GLY A . n A 1 393 SER 393 402 402 SER SER A . n A 1 394 THR 394 403 403 THR THR A . n A 1 395 ASN 395 404 404 ASN ASN A . n A 1 396 TYR 396 405 405 TYR TYR A . n A 1 397 SER 397 406 406 SER SER A . n A 1 398 LYS 398 407 407 LYS LYS A . n A 1 399 LEU 399 408 408 LEU LEU A . n A 1 400 THR 400 409 409 THR THR A . n A 1 401 ASN 401 410 410 ASN ASN A . n A 1 402 VAL 402 411 411 VAL VAL A . n A 1 403 SER 403 412 412 SER SER A . n A 1 404 ASN 404 413 413 ASN ASN A . n A 1 405 GLN 405 414 414 GLN GLN A . n A 1 406 TYR 406 415 415 TYR TYR A . n A 1 407 VAL 407 416 416 VAL VAL A . n A 1 408 PRO 408 417 417 PRO PRO A . n A 1 409 SER 409 418 418 SER SER A . n A 1 410 THR 410 419 419 THR THR A . n A 1 411 ALA 411 420 420 ALA ALA A . n A 1 412 ALA 412 421 421 ALA ALA A . n A 1 413 VAL 413 422 422 VAL VAL A . n A 1 414 ASN 414 423 423 ASN ASN A . n A 1 415 ALA 415 424 424 ALA ALA A . n A 1 416 SER 416 425 425 SER SER A . n A 1 417 ALA 417 426 426 ALA ALA A . n A 1 418 GLY 418 427 427 GLY GLY A . n A 1 419 VAL 419 428 428 VAL VAL A . n A 1 420 THR 420 429 429 THR THR A . n A 1 421 ASN 421 430 430 ASN ASN A . n A 1 422 THR 422 431 431 THR THR A . n A 1 423 GLY 423 432 432 GLY GLY A . n A 1 424 ILE 424 433 433 ILE ILE A . n A 1 425 PRO 425 434 434 PRO PRO A . n A 1 426 ILE 426 435 435 ILE ILE A . n A 1 427 PRO 427 436 436 PRO PRO A . n A 1 428 SER 428 437 437 SER SER A . n A 1 429 ALA 429 438 438 ALA ALA A . n A 1 430 THR 430 439 439 THR THR A . n A 1 431 ASN 431 440 440 ASN ASN A . n A 1 432 PRO 432 441 441 PRO PRO A . n A 1 433 ALA 433 442 442 ALA ALA A . n A 1 434 VAL 434 443 443 VAL VAL A . n A 1 435 THR 435 444 444 THR THR A . n A 1 436 GLN 436 445 445 GLN GLN A . n A 1 437 GLN 437 446 446 GLN GLN A . n A 1 438 ASN 438 447 447 ASN ASN A . n A 1 439 GLN 439 448 448 GLN GLN A . n A 1 440 THR 440 449 449 THR THR A . n A 1 441 PHE 441 450 450 PHE PHE A . n A 1 442 GLN 442 451 451 GLN GLN A . n A 1 443 HIS 443 452 452 HIS HIS A . n A 1 444 ILE 444 453 453 ILE ILE A . n A 1 445 PHE 445 454 454 PHE PHE A . n A 1 446 ARG 446 455 455 ARG ARG A . n A 1 447 VAL 447 456 456 VAL VAL A . n A 1 448 LEU 448 457 457 LEU LEU A . n A 1 449 ASN 449 458 458 ASN ASN A . n A 1 450 PHE 450 459 459 PHE PHE A . n A 1 451 ASN 451 460 460 ASN ASN A . n A 1 452 VAL 452 461 461 VAL VAL A . n A 1 453 LEU 453 462 462 LEU LEU A . n A 1 454 ARG 454 463 463 ARG ARG A . n A 1 455 LEU 455 464 464 LEU LEU A . n A 1 456 SER 456 465 465 SER SER A . n A 1 457 GLY 457 466 466 GLY GLY A . n A 1 458 GLY 458 467 467 GLY GLY A . n A 1 459 SER 459 468 468 SER SER A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email kazum@nips.ac.jp _pdbx_contact_author.name_first Kazuyoshi _pdbx_contact_author.name_last Murata _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9446-3652 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.15.2_3472: _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7YJL _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7YJL _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 187440 _em_3d_reconstruction.resolution 4.42 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name Melbournevirus _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7YJL _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 2000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7YJL _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7YJL _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD1 A ASN 404 ? ? H A SER 406 ? ? 1.39 2 1 OE1 A GLU 121 ? ? HE A ARG 215 ? ? 1.47 3 1 HH12 A ARG 57 ? ? OG A SER 60 ? ? 1.54 4 1 HE22 A GLN 301 ? ? O A ALA 304 ? ? 1.55 5 1 OD1 A ASN 413 ? ? H A GLN 414 ? ? 1.58 6 1 OD1 A ASP 243 ? ? OG1 A THR 247 ? ? 1.89 7 1 OG A SER 300 ? ? OG A SER 425 ? ? 1.92 8 1 OG1 A THR 178 ? ? OE1 A GLU 180 ? ? 1.98 9 1 OG A SER 389 ? ? O A SER 391 ? ? 2.02 10 1 NH1 A ARG 75 ? ? O A ALA 202 ? ? 2.03 11 1 OD1 A ASP 78 ? ? NH1 A ARG 274 ? ? 2.06 12 1 OG A SER 391 ? ? O A LYS 400 ? ? 2.09 13 1 OD2 A ASP 141 ? ? OH A TYR 335 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 13 ? ? -91.73 -60.72 2 1 PHE A 16 ? ? 69.78 -5.84 3 1 LEU A 29 ? ? -94.10 -60.51 4 1 PHE A 65 ? ? -138.64 -40.70 5 1 ASP A 78 ? ? -120.61 -54.56 6 1 PHE A 115 ? ? -92.84 -65.49 7 1 ASN A 128 ? ? 78.36 -6.76 8 1 ASP A 129 ? ? -141.63 -1.24 9 1 LEU A 130 ? ? -168.58 -169.18 10 1 GLN A 145 ? ? -94.47 -62.06 11 1 ASN A 147 ? ? -98.53 33.87 12 1 PRO A 164 ? ? -64.39 7.08 13 1 PHE A 189 ? ? 85.99 6.22 14 1 TYR A 190 ? ? -140.18 54.85 15 1 GLU A 192 ? ? -99.23 36.11 16 1 ALA A 197 ? ? -101.90 76.07 17 1 GLN A 239 ? ? -59.68 170.17 18 1 GLN A 288 ? ? -170.91 -170.98 19 1 LEU A 302 ? ? -75.21 -167.17 20 1 TYR A 319 ? ? -172.18 144.02 21 1 SER A 326 ? ? -37.71 -70.17 22 1 SER A 327 ? ? 53.65 19.39 23 1 THR A 337 ? ? -86.69 49.37 24 1 ALA A 350 ? ? -69.45 -175.11 25 1 THR A 357 ? ? 38.89 53.80 26 1 TYR A 388 ? ? -172.55 144.57 27 1 THR A 431 ? ? 72.79 35.38 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 1560514 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism Melbournevirus _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 26.4 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' Japan JP19H04845 1 'Swedish Research Council' Sweden 2018-03387 2 'The Swedish Foundation for Strategic Research' Sweden JA2014-5721 3 'Swedish Research Council' Sweden 2018-00421 4 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? #