HEADER HYDROLASE 27-JUL-22 7YM0 TITLE LYSOPLASMALOGEN-SPECIFIC PHOSPHOLIPASE D (LYPLS-PLD) WITH CA2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOPLASMALOGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCRISPUM SP. RD004668; SOURCE 3 ORGANISM_TAXID: 1424779; SOURCE 4 GENE: LYSPLS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOLIPASE D, LISOPLASMALOGEN, THERMOCRISPUM, LYSOPAF, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YASUTAKE,S.SAKASEGAWA,D.SUGIMORI,K.MURAYAMA REVDAT 1 04-JAN-23 7YM0 0 JRNL AUTH H.HAMANA,Y.YASUTAKE,M.KATO-MURAYAMA,T.HOSAKA,M.SHIROUZU, JRNL AUTH 2 S.I.SAKASEGAWA,D.SUGIMORI,K.MURAYAMA JRNL TITL STRUCTURAL BASIS FOR THE SUBSTRATE SPECIFICITY SWITCHING OF JRNL TITL 2 LYSOPLASMALOGEN-SPECIFIC PHOSPHOLIPASE D FROM THERMOCRISPUM JRNL TITL 3 SP. RD004668. JRNL REF BIOSCI.BIOTECHNOL.BIOCHEM. V. 87 74 2022 JRNL REFN ISSN 0916-8451 JRNL PMID 36307380 JRNL DOI 10.1093/BBB/ZBAC169 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.2650 - 4.9745 1.00 2832 144 0.1685 0.1918 REMARK 3 2 4.9745 - 4.3462 1.00 2794 137 0.1415 0.1863 REMARK 3 3 4.3462 - 3.9490 1.00 2782 140 0.1589 0.2067 REMARK 3 4 3.9490 - 3.6661 1.00 2726 151 0.1789 0.2016 REMARK 3 5 3.6661 - 3.4500 1.00 2765 159 0.1983 0.2298 REMARK 3 6 3.4500 - 3.2773 1.00 2735 150 0.2137 0.2691 REMARK 3 7 3.2773 - 3.1346 1.00 2715 144 0.2474 0.2723 REMARK 3 8 3.1346 - 3.0140 1.00 2728 153 0.2683 0.3125 REMARK 3 9 3.0140 - 2.9100 1.00 2741 129 0.2961 0.3673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4756 REMARK 3 ANGLE : 0.840 6490 REMARK 3 CHIRALITY : 0.053 720 REMARK 3 PLANARITY : 0.006 866 REMARK 3 DIHEDRAL : 21.051 1768 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.8974 14.4935 0.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.8674 T22: 0.6294 REMARK 3 T33: 0.6678 T12: 0.0169 REMARK 3 T13: 0.0490 T23: -0.0510 REMARK 3 L TENSOR REMARK 3 L11: 2.1525 L22: 3.5755 REMARK 3 L33: 2.5845 L12: 0.8953 REMARK 3 L13: 0.5856 L23: -0.9531 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: -0.3992 S13: -0.0297 REMARK 3 S21: 0.7357 S22: -0.2875 S23: 0.1679 REMARK 3 S31: -0.0319 S32: -0.0335 S33: 0.1539 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.5917 11.8708 3.9297 REMARK 3 T TENSOR REMARK 3 T11: 0.8320 T22: 0.5430 REMARK 3 T33: 0.5590 T12: -0.0101 REMARK 3 T13: 0.1251 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 2.7695 L22: 3.8523 REMARK 3 L33: 3.6136 L12: 1.1712 REMARK 3 L13: 0.2954 L23: 0.5822 REMARK 3 S TENSOR REMARK 3 S11: 0.1154 S12: -0.4195 S13: 0.1173 REMARK 3 S21: 0.6102 S22: -0.1747 S23: 0.5429 REMARK 3 S31: -0.2662 S32: 0.0092 S33: 0.0603 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.7292 -1.4738 -11.8967 REMARK 3 T TENSOR REMARK 3 T11: 0.6975 T22: 0.4524 REMARK 3 T33: 0.6929 T12: -0.0649 REMARK 3 T13: -0.0070 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.1709 L22: 3.8071 REMARK 3 L33: 5.1886 L12: -0.2042 REMARK 3 L13: -1.7118 L23: -1.0571 REMARK 3 S TENSOR REMARK 3 S11: -0.0982 S12: 0.1462 S13: -0.3780 REMARK 3 S21: -0.2960 S22: -0.0710 S23: 0.2948 REMARK 3 S31: 0.7455 S32: -0.4260 S33: 0.1575 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.5033 14.9095 -20.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.5442 T22: 0.4798 REMARK 3 T33: 0.4905 T12: 0.0276 REMARK 3 T13: 0.0041 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 4.9312 L22: 5.9570 REMARK 3 L33: 7.0040 L12: 1.3523 REMARK 3 L13: 1.4588 L23: -0.0147 REMARK 3 S TENSOR REMARK 3 S11: 0.0889 S12: 0.3795 S13: 0.2835 REMARK 3 S21: -0.1425 S22: 0.0343 S23: -0.0074 REMARK 3 S31: -0.0078 S32: 0.0510 S33: -0.1648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1670 37.7842 -11.1866 REMARK 3 T TENSOR REMARK 3 T11: 0.8364 T22: 0.7079 REMARK 3 T33: 0.7512 T12: 0.0135 REMARK 3 T13: -0.0888 T23: -0.0915 REMARK 3 L TENSOR REMARK 3 L11: 1.8429 L22: 2.4848 REMARK 3 L33: 2.6143 L12: -0.0112 REMARK 3 L13: -0.1578 L23: -1.0811 REMARK 3 S TENSOR REMARK 3 S11: 0.0578 S12: -0.3685 S13: 0.0209 REMARK 3 S21: 0.4668 S22: -0.2390 S23: -0.2981 REMARK 3 S31: -0.1448 S32: 0.4786 S33: 0.2208 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 134 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2413 37.3465 -17.4745 REMARK 3 T TENSOR REMARK 3 T11: 0.5658 T22: 0.5160 REMARK 3 T33: 0.5926 T12: 0.0446 REMARK 3 T13: 0.0011 T23: -0.1192 REMARK 3 L TENSOR REMARK 3 L11: 2.4575 L22: 5.2976 REMARK 3 L33: 6.0949 L12: -0.6363 REMARK 3 L13: 0.4106 L23: -3.8024 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.0595 S13: -0.2814 REMARK 3 S21: 0.1476 S22: -0.1462 S23: -0.2237 REMARK 3 S31: 0.2181 S32: 0.6580 S33: 0.1891 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 202 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.4999 56.2055 -15.1803 REMARK 3 T TENSOR REMARK 3 T11: 0.8897 T22: 0.4212 REMARK 3 T33: 0.8011 T12: 0.0270 REMARK 3 T13: 0.0730 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 5.3513 L22: 4.1270 REMARK 3 L33: 3.8424 L12: 0.4263 REMARK 3 L13: -2.0229 L23: 0.4207 REMARK 3 S TENSOR REMARK 3 S11: 0.3963 S12: -0.1096 S13: 0.9277 REMARK 3 S21: 0.2936 S22: -0.0481 S23: 0.5750 REMARK 3 S31: -0.6922 S32: -0.1448 S33: -0.3991 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 276 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.5642 43.1102 -5.2742 REMARK 3 T TENSOR REMARK 3 T11: 0.8601 T22: 0.6204 REMARK 3 T33: 0.7213 T12: -0.0065 REMARK 3 T13: 0.2060 T23: -0.1478 REMARK 3 L TENSOR REMARK 3 L11: 3.3903 L22: 5.5921 REMARK 3 L33: 4.3031 L12: 0.5991 REMARK 3 L13: -0.5727 L23: -1.6611 REMARK 3 S TENSOR REMARK 3 S11: 0.1617 S12: -0.4497 S13: 0.4538 REMARK 3 S21: 1.0925 S22: -0.1197 S23: 0.6369 REMARK 3 S31: -0.4913 S32: -0.4365 S33: -0.0271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-22. REMARK 100 THE DEPOSITION ID IS D_1300031228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.910 REMARK 200 RESOLUTION RANGE LOW (A) : 47.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5, 50 MM NACL, AND 12% REMARK 280 PEG3350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.06700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 71.47600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 71.47600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.60050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 71.47600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 71.47600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.53350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 71.47600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.47600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 94.60050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 71.47600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.47600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.53350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.06700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 THR A 28 REMARK 465 THR A 29 REMARK 465 ARG A 30 REMARK 465 THR A 31 REMARK 465 THR A 32 REMARK 465 GLY A 334 REMARK 465 MET B 27 REMARK 465 THR B 28 REMARK 465 THR B 29 REMARK 465 ARG B 30 REMARK 465 THR B 31 REMARK 465 THR B 32 REMARK 465 GLY B 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 87 142.28 -170.09 REMARK 500 ARG A 123 19.73 -143.17 REMARK 500 HIS A 124 -116.50 52.58 REMARK 500 SER A 210 158.62 178.22 REMARK 500 PHE A 283 -85.80 -124.69 REMARK 500 TYR A 309 77.47 -116.52 REMARK 500 HIS B 124 -121.20 57.23 REMARK 500 PHE B 283 -79.14 -124.38 REMARK 500 SER B 300 0.75 -66.91 REMARK 500 MET B 306 79.92 -111.97 REMARK 500 TYR B 309 72.62 -116.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE2 REMARK 620 2 ASP A 75 OD1 112.6 REMARK 620 3 GLU A 175 OE2 110.6 95.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 73 OE2 REMARK 620 2 ASP B 75 OD2 106.1 REMARK 620 3 GLU B 175 OE2 98.4 79.6 REMARK 620 N 1 2 DBREF1 7YM0 A 28 334 UNP A0A0U4VTN7_9PSEU DBREF2 7YM0 A A0A0U4VTN7 28 334 DBREF1 7YM0 B 28 334 UNP A0A0U4VTN7_9PSEU DBREF2 7YM0 B A0A0U4VTN7 28 334 SEQADV 7YM0 MET A 27 UNP A0A0U4VTN INITIATING METHIONINE SEQADV 7YM0 MET B 27 UNP A0A0U4VTN INITIATING METHIONINE SEQRES 1 A 308 MET THR THR ARG THR THR ASP ASN PRO TRP LEU ASP ALA SEQRES 2 A 308 ARG VAL LEU ASN MET ALA HIS ALA GLY GLY GLU ASN GLU SEQRES 3 A 308 ALA PRO ALA ASN THR LEU TYR ALA PHE LYS ARG ALA VAL SEQRES 4 A 308 LYS LEU GLY ALA ASN MET LEU GLU LEU ASP VAL GLN SER SEQRES 5 A 308 THR LYS ASP ASP GLN LEU VAL VAL ILE HIS ASN ALA THR SEQRES 6 A 308 VAL ASP GLN THR THR ASP GLY THR GLY LYS VAL ARG ASP SEQRES 7 A 308 LEU THR PHE GLU GLN VAL HIS GLU LEU ASP ALA ALA TYR SEQRES 8 A 308 ASN PHE ILE PRO GLY ARG HIS ALA VAL PRO GLY GLU PRO SEQRES 9 A 308 PRO GLU SER TYR PRO LEU ARG GLY VAL ARG THR GLY GLU SEQRES 10 A 308 LYS LYS PRO PRO PRO GLY TYR GLN PRO SER ASP PHE ALA SEQRES 11 A 308 ILE PRO LYS LEU ALA ASP VAL LEU GLU ALA PHE PRO ARG SEQRES 12 A 308 THR PRO ILE ASN ILE GLU ILE LYS GLY THR SER ASP ALA SEQRES 13 A 308 ASP ILE PRO SER PHE LEU HIS ASN ALA LYS LEU LEU ALA SEQRES 14 A 308 ARG LEU LEU LYS LYS THR GLY ARG THR ASP PHE ILE VAL SEQRES 15 A 308 THR SER PHE ASN ASP LEU ALA VAL ALA LYS PHE HIS LEU SEQRES 16 A 308 LEU ALA PRO ASP ILE PRO ILE ALA PRO GLY MET ALA GLY SEQRES 17 A 308 LEU ALA ALA TYR PHE LEU LEU GLY VAL LYS PRO MET HIS SEQRES 18 A 308 GLY THR VAL ALA LEU GLN ILE PRO VAL ARG TYR GLN GLY SEQRES 19 A 308 LEU GLU ILE ALA THR PRO GLU PHE ILE ARG ARG ALA HIS SEQRES 20 A 308 ALA ASP GLY TYR ALA VAL HIS VAL TRP PHE SER GLY THR SEQRES 21 A 308 ALA PRO ASP ASP GLU ALA THR TYR ASN ARG ILE ILE ASP SEQRES 22 A 308 SER CYS ALA ASP GLY LEU MET PRO ALA TYR PRO ALA LEU SEQRES 23 A 308 LEU GLU ARG ILE LEU ASP GLU ARG GLY ILE GLU ARG PRO SEQRES 24 A 308 GLY ARG PRO GLY VAL ASP PRO CYS GLY SEQRES 1 B 308 MET THR THR ARG THR THR ASP ASN PRO TRP LEU ASP ALA SEQRES 2 B 308 ARG VAL LEU ASN MET ALA HIS ALA GLY GLY GLU ASN GLU SEQRES 3 B 308 ALA PRO ALA ASN THR LEU TYR ALA PHE LYS ARG ALA VAL SEQRES 4 B 308 LYS LEU GLY ALA ASN MET LEU GLU LEU ASP VAL GLN SER SEQRES 5 B 308 THR LYS ASP ASP GLN LEU VAL VAL ILE HIS ASN ALA THR SEQRES 6 B 308 VAL ASP GLN THR THR ASP GLY THR GLY LYS VAL ARG ASP SEQRES 7 B 308 LEU THR PHE GLU GLN VAL HIS GLU LEU ASP ALA ALA TYR SEQRES 8 B 308 ASN PHE ILE PRO GLY ARG HIS ALA VAL PRO GLY GLU PRO SEQRES 9 B 308 PRO GLU SER TYR PRO LEU ARG GLY VAL ARG THR GLY GLU SEQRES 10 B 308 LYS LYS PRO PRO PRO GLY TYR GLN PRO SER ASP PHE ALA SEQRES 11 B 308 ILE PRO LYS LEU ALA ASP VAL LEU GLU ALA PHE PRO ARG SEQRES 12 B 308 THR PRO ILE ASN ILE GLU ILE LYS GLY THR SER ASP ALA SEQRES 13 B 308 ASP ILE PRO SER PHE LEU HIS ASN ALA LYS LEU LEU ALA SEQRES 14 B 308 ARG LEU LEU LYS LYS THR GLY ARG THR ASP PHE ILE VAL SEQRES 15 B 308 THR SER PHE ASN ASP LEU ALA VAL ALA LYS PHE HIS LEU SEQRES 16 B 308 LEU ALA PRO ASP ILE PRO ILE ALA PRO GLY MET ALA GLY SEQRES 17 B 308 LEU ALA ALA TYR PHE LEU LEU GLY VAL LYS PRO MET HIS SEQRES 18 B 308 GLY THR VAL ALA LEU GLN ILE PRO VAL ARG TYR GLN GLY SEQRES 19 B 308 LEU GLU ILE ALA THR PRO GLU PHE ILE ARG ARG ALA HIS SEQRES 20 B 308 ALA ASP GLY TYR ALA VAL HIS VAL TRP PHE SER GLY THR SEQRES 21 B 308 ALA PRO ASP ASP GLU ALA THR TYR ASN ARG ILE ILE ASP SEQRES 22 B 308 SER CYS ALA ASP GLY LEU MET PRO ALA TYR PRO ALA LEU SEQRES 23 B 308 LEU GLU ARG ILE LEU ASP GLU ARG GLY ILE GLU ARG PRO SEQRES 24 B 308 GLY ARG PRO GLY VAL ASP PRO CYS GLY HET CA A 401 1 HET CA B 401 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) HELIX 1 AA1 ASN A 34 ASP A 38 5 5 HELIX 2 AA2 THR A 57 LEU A 67 1 11 HELIX 3 AA3 LYS A 101 LEU A 105 5 5 HELIX 4 AA4 THR A 106 GLU A 112 1 7 HELIX 5 AA5 PRO A 130 TYR A 134 5 5 HELIX 6 AA6 GLN A 151 ALA A 156 5 6 HELIX 7 AA7 LYS A 159 PHE A 167 1 9 HELIX 8 AA8 ASP A 183 GLY A 202 1 20 HELIX 9 AA9 ASN A 212 ALA A 223 1 12 HELIX 10 AB1 GLY A 231 GLY A 242 1 12 HELIX 11 AB2 THR A 265 ASP A 275 1 11 HELIX 12 AB3 ASP A 290 SER A 300 1 11 HELIX 13 AB4 TYR A 309 GLY A 321 1 13 HELIX 14 AB5 ASN B 34 ASP B 38 5 5 HELIX 15 AB6 THR B 57 LEU B 67 1 11 HELIX 16 AB7 LYS B 101 LEU B 105 5 5 HELIX 17 AB8 THR B 106 GLU B 112 1 7 HELIX 18 AB9 PRO B 130 TYR B 134 5 5 HELIX 19 AC1 GLN B 151 ALA B 156 5 6 HELIX 20 AC2 LYS B 159 PHE B 167 1 9 HELIX 21 AC3 ASP B 183 THR B 201 1 19 HELIX 22 AC4 ASN B 212 ALA B 223 1 12 HELIX 23 AC5 GLY B 231 GLY B 242 1 12 HELIX 24 AC6 THR B 265 ASP B 275 1 11 HELIX 25 AC7 ASP B 290 SER B 300 1 11 HELIX 26 AC8 TYR B 309 GLY B 321 1 13 SHEET 1 AA1 4 LEU A 84 VAL A 86 0 SHEET 2 AA1 4 MET A 71 SER A 78 -1 N GLN A 77 O VAL A 85 SHEET 3 AA1 4 ILE A 172 ILE A 176 1 O ASN A 173 N LEU A 72 SHEET 4 AA1 4 PHE A 206 SER A 210 1 O ILE A 207 N ILE A 174 SHEET 1 AA2 6 LEU A 84 VAL A 86 0 SHEET 2 AA2 6 MET A 71 SER A 78 -1 N GLN A 77 O VAL A 85 SHEET 3 AA2 6 LEU A 42 HIS A 46 1 N ALA A 45 O GLU A 73 SHEET 4 AA2 6 GLY A 304 MET A 306 1 O LEU A 305 N MET A 44 SHEET 5 AA2 6 ALA A 278 TRP A 282 1 N VAL A 281 O MET A 306 SHEET 6 AA2 6 ALA A 251 PRO A 255 1 N LEU A 252 O ALA A 278 SHEET 1 AA3 2 ARG A 257 TYR A 258 0 SHEET 2 AA3 2 LEU A 261 GLU A 262 -1 O LEU A 261 N TYR A 258 SHEET 1 AA4 5 LEU B 84 VAL B 86 0 SHEET 2 AA4 5 MET B 71 SER B 78 -1 N GLN B 77 O VAL B 85 SHEET 3 AA4 5 ILE B 172 ILE B 176 1 O ASN B 173 N LEU B 72 SHEET 4 AA4 5 PHE B 206 SER B 210 1 O THR B 209 N ILE B 176 SHEET 5 AA4 5 ILE B 228 ALA B 229 1 O ALA B 229 N VAL B 208 SHEET 1 AA5 6 LEU B 84 VAL B 86 0 SHEET 2 AA5 6 MET B 71 SER B 78 -1 N GLN B 77 O VAL B 85 SHEET 3 AA5 6 LEU B 42 HIS B 46 1 N ALA B 45 O MET B 71 SHEET 4 AA5 6 GLY B 304 MET B 306 1 O LEU B 305 N MET B 44 SHEET 5 AA5 6 ALA B 278 TRP B 282 1 N VAL B 281 O GLY B 304 SHEET 6 AA5 6 ALA B 251 PRO B 255 1 N LEU B 252 O ALA B 278 SHEET 1 AA6 2 ARG B 257 TYR B 258 0 SHEET 2 AA6 2 LEU B 261 GLU B 262 -1 O LEU B 261 N TYR B 258 SSBOND 1 CYS A 301 CYS A 333 1555 1555 2.10 SSBOND 2 CYS B 301 CYS B 333 1555 1555 1.97 LINK OE2 GLU A 73 CA CA A 401 1555 1555 2.23 LINK OD1 ASP A 75 CA CA A 401 1555 1555 1.93 LINK OE2 GLU A 175 CA CA A 401 1555 1555 2.39 LINK OE2 GLU B 73 CA CA B 401 1555 1555 2.37 LINK OD2 ASP B 75 CA CA B 401 1555 1555 1.91 LINK OE2 GLU B 175 CA CA B 401 1555 1555 2.63 CISPEP 1 ARG A 40 VAL A 41 0 -6.45 CISPEP 2 ARG B 40 VAL B 41 0 -2.13 CRYST1 142.952 142.952 126.134 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006995 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007928 0.00000