HEADER MEMBRANE PROTEIN 27-JUL-22 7YM8 TITLE CRYO-EM STRUCTURE OF NB29-ALPHA1AAR-MINIGSQ COMPLEX BOUND TO TITLE 2 OXYMETAZOLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINIGSQ; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALPHA1A ADRENERGIC RECEPTOR; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NANOBODY 29; COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GPCR, NANOBODY, AGONIST, COMPLEX, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.TOYODA,A.ZHU,C.YAN,B.K.KOBILKA,X.LIU REVDAT 1 05-JUL-23 7YM8 0 JRNL AUTH Y.TOYODA,A.ZHU,F.KONG,S.SHAN,J.ZHAO,N.WANG,X.SUN,L.ZHANG, JRNL AUTH 2 C.YAN,B.K.KOBILKA,X.LIU JRNL TITL STRUCTURAL BASIS OF ALPHA 1A -ADRENERGIC RECEPTOR ACTIVATION JRNL TITL 2 AND RECOGNITION BY AN EXTRACELLULAR NANOBODY. JRNL REF NAT COMMUN V. 14 3655 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37339967 JRNL DOI 10.1038/S41467-023-39310-X REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.920 REMARK 3 NUMBER OF PARTICLES : 359000 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7YM8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031176. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NB29-ALPHA1AAR-MINIGSQ COMPLEX; REMARK 245 NB29; ALPHA1AAR; MINIGSQ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1300.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -17 REMARK 465 GLY B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 LEU B -7 REMARK 465 GLU B -6 REMARK 465 VAL B -5 REMARK 465 LEU B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 ILE B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 GLN B 6 REMARK 465 LYS B 7 REMARK 465 ASP B 8 REMARK 465 LYS B 9 REMARK 465 GLN B 10 REMARK 465 VAL B 11 REMARK 465 TYR B 12 REMARK 465 ARG B 13 REMARK 465 ARG B 36 REMARK 465 ILE B 37 REMARK 465 LEU B 38 REMARK 465 HIS B 39 REMARK 465 GLY B 40 REMARK 465 GLY B 41 REMARK 465 SER B 42 REMARK 465 GLY B 43 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 GLY B 46 REMARK 465 GLY B 47 REMARK 465 THR B 48 REMARK 465 SER B 49 REMARK 465 GLY B 50 REMARK 465 LEU B 136 REMARK 465 ALA B 137 REMARK 465 GLY B 138 REMARK 465 LYS B 139 REMARK 465 SER B 140 REMARK 465 LYS B 141 REMARK 465 ILE B 142 REMARK 465 GLU B 143 REMARK 465 ASP B 144 REMARK 465 TYR B 145 REMARK 465 PHE B 146 REMARK 465 PRO B 147 REMARK 465 GLU B 148 REMARK 465 PHE B 149 REMARK 465 ALA B 150 REMARK 465 ARG B 151 REMARK 465 TYR B 152 REMARK 465 THR B 153 REMARK 465 THR B 154 REMARK 465 PRO B 155 REMARK 465 GLU B 156 REMARK 465 ASP B 157 REMARK 465 ALA B 158 REMARK 465 THR B 159 REMARK 465 PRO B 160 REMARK 465 GLU B 161 REMARK 465 PRO B 162 REMARK 465 GLY B 163 REMARK 465 GLU B 164 REMARK 465 ASP B 165 REMARK 465 PRO B 166 REMARK 465 MET A -23 REMARK 465 LYS A -22 REMARK 465 THR A -21 REMARK 465 ILE A -20 REMARK 465 ILE A -19 REMARK 465 ALA A -18 REMARK 465 LEU A -17 REMARK 465 SER A -16 REMARK 465 TYR A -15 REMARK 465 ILE A -14 REMARK 465 PHE A -13 REMARK 465 CYS A -12 REMARK 465 LEU A -11 REMARK 465 VAL A -10 REMARK 465 PHE A -9 REMARK 465 ALA A -8 REMARK 465 ASP A -7 REMARK 465 TYR A -6 REMARK 465 LYS A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PHE A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 GLN A 7 REMARK 465 ALA A 8 REMARK 465 SER A 9 REMARK 465 ASP A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLN A 13 REMARK 465 CYS A 14 REMARK 465 THR A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 PRO A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 VAL A 21 REMARK 465 GLN A 22 REMARK 465 ILE A 23 REMARK 465 SER A 214A REMARK 465 ARG A 214B REMARK 465 GLY A 214C REMARK 465 LEU A 214D REMARK 465 LYS A 214E REMARK 465 SER A 214F REMARK 465 GLY A 214G REMARK 465 LEU A 214H REMARK 465 ASN A 214I REMARK 465 ILE A 214J REMARK 465 PHE A 214K REMARK 465 GLU A 214L REMARK 465 MET A 214M REMARK 465 LEU A 214N REMARK 465 ARG A 214O REMARK 465 ILE A 214P REMARK 465 ASP A 214Q REMARK 465 GLU A 214R REMARK 465 GLY A 214S REMARK 465 GLY A 214T REMARK 465 GLY A 214U REMARK 465 SER A 214V REMARK 465 GLY A 214W REMARK 465 GLY A 214X REMARK 465 ASP A 214Y REMARK 465 GLU A 214Z REMARK 465 ALA A 215A REMARK 465 GLU A 215B REMARK 465 LYS A 215C REMARK 465 LEU A 215D REMARK 465 PHE A 215E REMARK 465 ASN A 215F REMARK 465 GLN A 215G REMARK 465 ASP A 215H REMARK 465 VAL A 215I REMARK 465 ASP A 215J REMARK 465 ALA A 215K REMARK 465 ALA A 215L REMARK 465 VAL A 215M REMARK 465 ARG A 215N REMARK 465 GLY A 215O REMARK 465 ILE A 215P REMARK 465 LEU A 215Q REMARK 465 ARG A 215R REMARK 465 ASN A 215S REMARK 465 ALA A 215T REMARK 465 LYS A 215U REMARK 465 LEU A 215V REMARK 465 LYS A 215W REMARK 465 PRO A 215X REMARK 465 VAL A 215Y REMARK 465 TYR A 215Z REMARK 465 ASP A 216A REMARK 465 SER A 216B REMARK 465 LEU A 216C REMARK 465 ASP A 216D REMARK 465 ALA A 216E REMARK 465 VAL A 216F REMARK 465 ARG A 216G REMARK 465 ARG A 216H REMARK 465 ALA A 216I REMARK 465 ALA A 216J REMARK 465 LEU A 216K REMARK 465 ILE A 216L REMARK 465 ASN A 216M REMARK 465 MET A 216N REMARK 465 VAL A 216O REMARK 465 PHE A 216P REMARK 465 GLN A 216Q REMARK 465 MET A 216R REMARK 465 GLY A 216S REMARK 465 GLU A 216T REMARK 465 THR A 216U REMARK 465 GLY A 216V REMARK 465 VAL A 216W REMARK 465 ALA A 216X REMARK 465 GLY A 216Y REMARK 465 PHE A 216Z REMARK 465 THR A 217A REMARK 465 ASN A 217B REMARK 465 SER A 217C REMARK 465 LEU A 217D REMARK 465 ARG A 217E REMARK 465 MET A 217F REMARK 465 LEU A 217G REMARK 465 GLN A 217H REMARK 465 GLN A 217I REMARK 465 LYS A 217J REMARK 465 ARG A 217K REMARK 465 TRP A 217L REMARK 465 ASP A 217M REMARK 465 GLU A 217N REMARK 465 ALA A 217O REMARK 465 ALA A 217P REMARK 465 VAL A 217Q REMARK 465 ASN A 217R REMARK 465 LEU A 217S REMARK 465 ALA A 217T REMARK 465 LYS A 217U REMARK 465 SER A 217V REMARK 465 ARG A 217W REMARK 465 TRP A 217X REMARK 465 TYR A 217Y REMARK 465 ASN A 217Z REMARK 465 GLN A 218A REMARK 465 THR A 218B REMARK 465 PRO A 218C REMARK 465 ASN A 218D REMARK 465 ARG A 218E REMARK 465 ALA A 218F REMARK 465 LYS A 218G REMARK 465 ARG A 218H REMARK 465 VAL A 218I REMARK 465 ILE A 218J REMARK 465 THR A 218K REMARK 465 THR A 218L REMARK 465 PHE A 218M REMARK 465 ARG A 218N REMARK 465 THR A 218O REMARK 465 GLY A 218P REMARK 465 THR A 218Q REMARK 465 TRP A 218R REMARK 465 ASP A 218S REMARK 465 ALA A 218T REMARK 465 TYR A 218U REMARK 465 ARG A 342 REMARK 465 ILE A 343 REMARK 465 GLN A 344 REMARK 465 CYS A 345 REMARK 465 LEU A 346 REMARK 465 CYS A 347 REMARK 465 ARG A 348 REMARK 465 LYS A 349 REMARK 465 GLN A 350 REMARK 465 SER A 351 REMARK 465 SER A 352 REMARK 465 LYS A 353 REMARK 465 HIS A 354 REMARK 465 ALA A 355 REMARK 465 LEU A 356 REMARK 465 GLY A 357 REMARK 465 TYR A 358 REMARK 465 THR A 359 REMARK 465 LEU A 360 REMARK 465 HIS A 361 REMARK 465 PRO A 362 REMARK 465 PRO A 363 REMARK 465 SER A 364 REMARK 465 GLN A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 GLU A 368 REMARK 465 GLY A 369 REMARK 465 GLN A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 MET D -21 REMARK 465 LYS D -20 REMARK 465 TYR D -19 REMARK 465 LEU D -18 REMARK 465 LEU D -17 REMARK 465 PRO D -16 REMARK 465 THR D -15 REMARK 465 ALA D -14 REMARK 465 ALA D -13 REMARK 465 ALA D -12 REMARK 465 GLY D -11 REMARK 465 LEU D -10 REMARK 465 LEU D -9 REMARK 465 LEU D -8 REMARK 465 LEU D -7 REMARK 465 ALA D -6 REMARK 465 ALA D -5 REMARK 465 GLN D -4 REMARK 465 PRO D -3 REMARK 465 ALA D -2 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119 REMARK 465 HIS D 120 REMARK 465 HIS D 121 REMARK 465 HIS D 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 ASN B 25 CG OD1 ND2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 GLN B 34 CG CD OE1 NE2 REMARK 470 PHE B 52 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 GLN B 71 CG CD OE1 NE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 ARG B 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 CYS B 81 SG REMARK 470 PHE B 82 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 83 CG OD1 ND2 REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 ASP B 96 CG OD1 OD2 REMARK 470 ASN B 98 CG OD1 ND2 REMARK 470 ARG B 99 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ASN B 113 CG OD1 ND2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 115 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 115 CZ3 CH2 REMARK 470 LEU B 116 CG CD1 CD2 REMARK 470 ARG B 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 ASP B 129 CG OD1 OD2 REMARK 470 LEU B 130 CG CD1 CD2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 LYS B 134 CG CD CE NZ REMARK 470 VAL B 135 CG1 CG2 REMARK 470 ARG B 167 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 168 CG1 CG2 REMARK 470 THR B 169 OG1 CG2 REMARK 470 ARG B 170 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 188 CG OD1 OD2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 201 CG1 CG2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 PHE A 264 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 300 CG OD1 OD2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLN D 13 CG CD OE1 NE2 REMARK 470 LYS D 43 CG CD CE NZ REMARK 470 LYS D 74 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 94 35.92 -99.22 REMARK 500 THR B 118 47.90 35.49 REMARK 500 HIS A 58 14.96 -141.56 REMARK 500 PHE A 163 -36.98 -130.41 REMARK 500 TRP A 165 30.94 -94.57 REMARK 500 VAL D 48 -51.97 -123.67 REMARK 500 PRO D 86 47.00 -80.60 REMARK 500 ALA D 90 -168.85 -161.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-33924 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF NB29-ALPHA1AAR-MINIGSQ COMPLEX BOUND TO REMARK 900 OXYMETAZOLINE DBREF 7YM8 B -17 228 PDB 7YM8 7YM8 -17 228 DBREF 7YM8 A -23 378 PDB 7YM8 7YM8 -23 378 DBREF 7YM8 D -21 122 PDB 7YM8 7YM8 -21 122 SEQRES 1 B 246 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS LEU GLU VAL SEQRES 2 B 246 LEU PHE GLN GLY PRO ILE GLU LYS GLN LEU GLN LYS ASP SEQRES 3 B 246 LYS GLN VAL TYR ARG ALA THR HIS ARG LEU LEU LEU LEU SEQRES 4 B 246 GLY ALA ASP ASN SER GLY LYS SER THR ILE VAL LYS GLN SEQRES 5 B 246 MET ARG ILE LEU HIS GLY GLY SER GLY GLY SER GLY GLY SEQRES 6 B 246 THR SER GLY ILE PHE GLU THR LYS PHE GLN VAL ASP LYS SEQRES 7 B 246 VAL ASN PHE HIS MET PHE ASP VAL GLY GLY GLN ARG ASP SEQRES 8 B 246 GLU ARG ARG LYS TRP ILE GLN CYS PHE ASN ASP VAL THR SEQRES 9 B 246 ALA ILE ILE PHE VAL VAL ASP SER SER ASP TYR ASN ARG SEQRES 10 B 246 LEU GLN GLU ALA LEU ASN ASP PHE LYS SER ILE TRP ASN SEQRES 11 B 246 ASN ARG TRP LEU ARG THR ILE SER VAL ILE LEU PHE LEU SEQRES 12 B 246 ASN LYS GLN ASP LEU LEU ALA GLU LYS VAL LEU ALA GLY SEQRES 13 B 246 LYS SER LYS ILE GLU ASP TYR PHE PRO GLU PHE ALA ARG SEQRES 14 B 246 TYR THR THR PRO GLU ASP ALA THR PRO GLU PRO GLY GLU SEQRES 15 B 246 ASP PRO ARG VAL THR ARG ALA LYS TYR PHE ILE ARG ASP SEQRES 16 B 246 GLU PHE LEU ARG ILE SER THR ALA SER GLY ASP GLY ARG SEQRES 17 B 246 HIS TYR CYS TYR PRO HIS PHE THR CYS ALA VAL ASP THR SEQRES 18 B 246 GLU ASN ALA ARG ARG ILE PHE ASN ASP CYS LYS ASP ILE SEQRES 19 B 246 ILE LEU GLN MET ASN LEU ARG GLU TYR ASN LEU VAL SEQRES 1 A 480 MET LYS THR ILE ILE ALA LEU SER TYR ILE PHE CYS LEU SEQRES 2 A 480 VAL PHE ALA ASP TYR LYS ASP ASP ASP ASP ALA MET VAL SEQRES 3 A 480 PHE LEU SER GLY GLN ALA SER ASP SER SER GLN CYS THR SEQRES 4 A 480 GLN PRO PRO ALA PRO VAL GLN ILE SER LYS ALA ILE LEU SEQRES 5 A 480 LEU GLY VAL ILE LEU GLY GLY LEU ILE LEU PHE GLY VAL SEQRES 6 A 480 LEU GLY ASN ILE LEU VAL ILE LEU SER VAL ALA CYS HIS SEQRES 7 A 480 ARG HIS LEU HIS SER VAL THR HIS TYR TYR ILE VAL ASN SEQRES 8 A 480 LEU ALA VAL ALA ASP LEU LEU LEU THR SER THR VAL LEU SEQRES 9 A 480 PRO PHE SER ALA ILE PHE GLU VAL LEU GLY TYR TRP ALA SEQRES 10 A 480 PHE GLY ARG VAL PHE CYS ASN ILE TRP ALA ALA VAL ASP SEQRES 11 A 480 VAL LEU CYS CYS THR ALA SER ILE MET GLY LEU CYS ILE SEQRES 12 A 480 ILE SER ILE ASP ARG TYR ILE GLY VAL SER TYR PRO LEU SEQRES 13 A 480 ARG TYR PRO THR ILE VAL THR GLN ARG ARG GLY LEU MET SEQRES 14 A 480 ALA LEU LEU CYS VAL TRP ALA LEU SER LEU VAL ILE SER SEQRES 15 A 480 ILE GLY PRO LEU PHE GLY TRP ARG GLN PRO ALA PRO GLU SEQRES 16 A 480 ASP GLU THR ILE CYS GLN ILE ASN GLU GLU PRO GLY TYR SEQRES 17 A 480 VAL LEU PHE SER ALA LEU GLY SER PHE TYR LEU PRO LEU SEQRES 18 A 480 ALA ILE ILE LEU VAL MET TYR CYS ARG VAL TYR VAL VAL SEQRES 19 A 480 ALA LYS ARG GLU SER ARG GLY LEU LYS SER GLY LEU ASN SEQRES 20 A 480 ILE PHE GLU MET LEU ARG ILE ASP GLU GLY GLY GLY SER SEQRES 21 A 480 GLY GLY ASP GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL SEQRES 22 A 480 ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU SEQRES 23 A 480 LYS PRO VAL TYR ASP SER LEU ASP ALA VAL ARG ARG ALA SEQRES 24 A 480 ALA LEU ILE ASN MET VAL PHE GLN MET GLY GLU THR GLY SEQRES 25 A 480 VAL ALA GLY PHE THR ASN SER LEU ARG MET LEU GLN GLN SEQRES 26 A 480 LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU ALA LYS SER SEQRES 27 A 480 ARG TRP TYR ASN GLN THR PRO ASN ARG ALA LYS ARG VAL SEQRES 28 A 480 ILE THR THR PHE ARG THR GLY THR TRP ASP ALA TYR LEU SEQRES 29 A 480 LYS PHE SER ARG GLU LYS LYS ALA ALA LYS THR LEU GLY SEQRES 30 A 480 ILE VAL VAL GLY CYS PHE VAL LEU CYS TRP LEU PRO PHE SEQRES 31 A 480 PHE LEU VAL MET PRO ILE GLY SER PHE PHE PRO ASP PHE SEQRES 32 A 480 LYS PRO SER GLU THR VAL PHE LYS ILE VAL PHE TRP LEU SEQRES 33 A 480 GLY TYR LEU ASN SER CYS ILE ASN PRO ILE ILE TYR PRO SEQRES 34 A 480 CYS SER SER GLN GLU PHE LYS LYS ALA PHE GLN ASN VAL SEQRES 35 A 480 LEU ARG ILE GLN CYS LEU CYS ARG LYS GLN SER SER LYS SEQRES 36 A 480 HIS ALA LEU GLY TYR THR LEU HIS PRO PRO SER GLN ALA SEQRES 37 A 480 VAL GLU GLY GLN HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 D 144 MET LYS TYR LEU LEU PRO THR ALA ALA ALA GLY LEU LEU SEQRES 2 D 144 LEU LEU ALA ALA GLN PRO ALA MET ALA GLN VAL GLN LEU SEQRES 3 D 144 GLN GLU SER GLY GLY GLY LEU VAL GLN ALA GLY GLY SER SEQRES 4 D 144 LEU ARG LEU SER CYS ALA ALA SER GLY ASN ILE SER ALA SEQRES 5 D 144 HIS TRP LYS MET GLY TRP TYR ARG GLN ALA PRO GLY LYS SEQRES 6 D 144 GLU ARG GLU PHE VAL ALA GLY ILE GLY TYR ALA ASN THR SEQRES 7 D 144 ASN TYR ALA ASP SER VAL LYS GLY ARG PHE THR ILE SER SEQRES 8 D 144 ARG ASP ASN ALA LYS ASN THR VAL TYR LEU GLN MET ASN SEQRES 9 D 144 SER LEU LYS PRO GLU ASP THR ALA VAL TYR TYR CYS ALA SEQRES 10 D 144 ALA TYR SER TYR TYR ARG ASP HIS SER TYR TRP GLY GLN SEQRES 11 D 144 GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS HIS SEQRES 12 D 144 HIS HET J5C A 501 19 HET Y01 A 502 35 HETNAM J5C OXYMETAZOLINE HETNAM Y01 CHOLESTEROL HEMISUCCINATE FORMUL 4 J5C C16 H24 N2 O FORMUL 5 Y01 C31 H50 O4 HELIX 1 AA1 GLY B 27 LYS B 33 1 7 HELIX 2 AA2 LYS B 77 PHE B 82 1 6 HELIX 3 AA3 ARG B 99 ASN B 113 1 15 HELIX 4 AA4 GLN B 128 GLU B 133 1 6 HELIX 5 AA5 THR B 169 THR B 184 1 16 HELIX 6 AA6 GLU B 204 TYR B 225 1 22 HELIX 7 AA7 LYS A 25 CYS A 53 1 29 HELIX 8 AA8 SER A 59 VAL A 79 1 21 HELIX 9 AA9 VAL A 79 GLY A 90 1 12 HELIX 10 AB1 GLY A 95 SER A 129 1 35 HELIX 11 AB2 ARG A 141 ILE A 159 1 19 HELIX 12 AB3 TYR A 184 ALA A 211 1 28 HELIX 13 AB4 LYS A 263 LEU A 286 1 24 HELIX 14 AB5 PRO A 287 SER A 296 1 10 HELIX 15 AB6 SER A 304 TYR A 326 1 23 HELIX 16 AB7 PRO A 327 SER A 329 5 3 HELIX 17 AB8 SER A 330 LEU A 341 1 12 SHEET 1 AA1 6 PHE B 52 VAL B 58 0 SHEET 2 AA1 6 VAL B 61 ASP B 67 -1 O PHE B 63 N PHE B 56 SHEET 3 AA1 6 THR B 15 LEU B 20 1 N LEU B 18 O HIS B 64 SHEET 4 AA1 6 ALA B 87 ASP B 93 1 O ILE B 89 N LEU B 19 SHEET 5 AA1 6 SER B 120 ASN B 126 1 O PHE B 124 N VAL B 92 SHEET 6 AA1 6 CYS B 193 PHE B 197 1 O HIS B 196 N LEU B 125 SHEET 1 AA2 4 GLU D 6 SER D 7 0 SHEET 2 AA2 4 SER D 17 CYS D 22 -1 O SER D 21 N SER D 7 SHEET 3 AA2 4 THR D 76 ASN D 82 -1 O LEU D 79 N LEU D 20 SHEET 4 AA2 4 PHE D 66 ASP D 71 -1 N ASP D 71 O THR D 76 SHEET 1 AA3 6 LEU D 11 GLN D 13 0 SHEET 2 AA3 6 THR D 110 SER D 115 1 O THR D 113 N VAL D 12 SHEET 3 AA3 6 ALA D 90 ALA D 95 -1 N TYR D 92 O THR D 110 SHEET 4 AA3 6 MET D 34 GLN D 39 -1 N TYR D 37 O TYR D 93 SHEET 5 AA3 6 ARG D 45 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA3 6 THR D 56 TYR D 58 -1 O ASN D 57 N GLY D 50 SSBOND 1 CYS A 99 CYS A 176 1555 1555 2.03 SSBOND 2 CYS D 22 CYS D 94 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000