HEADER BIOSYNTHETIC PROTEIN 01-AUG-22 7YNU TITLE CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME INTRODUCED WITH O-(2- TITLE 2 NITROBENZYL)-L-TYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: LYZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONNATURAL AMINO ACID CAGED AMINO ACID O-(2-NITROBENZYL)-L-TYROSINE KEYWDS 2 LYSOZYME CELL-FREE PROTEIN SYNTHESIS, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,M.SHIROUZU REVDAT 4 29-NOV-23 7YNU 1 REMARK REVDAT 3 15-NOV-23 7YNU 1 LINK ATOM REVDAT 2 05-OCT-22 7YNU 1 JRNL REVDAT 1 21-SEP-22 7YNU 0 JRNL AUTH T.HOSAKA,K.KATSURA,Y.ISHIZUKA-KATSURA,K.HANADA,K.ITO, JRNL AUTH 2 Y.TOMABECHI,M.INOUE,R.AKASAKA,C.TAKEMOTO,M.SHIROUZU JRNL TITL CRYSTAL STRUCTURE OF AN ARCHAEAL TYROSYL-TRNA SYNTHETASE JRNL TITL 2 BOUND TO PHOTOCAGED L-TYROSINE AND ITS POTENTIAL APPLICATION JRNL TITL 3 TO TIME-RESOLVED X-RAY CRYSTALLOGRAPHY. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36142308 JRNL DOI 10.3390/IJMS231810399 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 22081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8400 - 3.4700 1.00 1577 157 0.1781 0.1789 REMARK 3 2 3.4700 - 2.7500 1.00 1473 147 0.1810 0.2200 REMARK 3 3 2.7500 - 2.4100 1.00 1457 145 0.1982 0.2479 REMARK 3 4 2.4100 - 2.1900 1.00 1435 143 0.1780 0.2060 REMARK 3 5 2.1900 - 2.0300 1.00 1446 144 0.1801 0.2563 REMARK 3 6 2.0300 - 1.9100 1.00 1415 140 0.1865 0.2294 REMARK 3 7 1.9100 - 1.8100 0.99 1417 141 0.1850 0.2282 REMARK 3 8 1.8100 - 1.7400 0.99 1404 140 0.1975 0.2372 REMARK 3 9 1.7400 - 1.6700 0.99 1403 141 0.2228 0.2355 REMARK 3 10 1.6700 - 1.6100 1.00 1420 141 0.2247 0.2977 REMARK 3 11 1.6100 - 1.5600 1.00 1409 140 0.2231 0.2640 REMARK 3 12 1.5600 - 1.5200 1.00 1412 141 0.2413 0.2790 REMARK 3 13 1.5200 - 1.4800 1.00 1397 140 0.2605 0.2829 REMARK 3 14 1.4800 - 1.4400 1.00 1416 140 0.2975 0.3398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8508 -7.1817 9.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.2607 REMARK 3 T33: 0.2969 T12: -0.0454 REMARK 3 T13: 0.0005 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 1.8645 L22: 2.5812 REMARK 3 L33: 2.4475 L12: -0.6691 REMARK 3 L13: -0.2037 L23: 0.0659 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: -0.0665 S13: -0.2379 REMARK 3 S21: 0.1667 S22: 0.1101 S23: 0.2095 REMARK 3 S31: 0.0687 S32: -0.2842 S33: -0.0385 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7040 -11.5963 -2.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.3076 T22: 0.2072 REMARK 3 T33: 0.2814 T12: -0.0512 REMARK 3 T13: -0.0106 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 4.8547 L22: 2.1117 REMARK 3 L33: 1.2137 L12: 0.0866 REMARK 3 L13: -0.6603 L23: -0.4451 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: 0.2549 S13: -0.5085 REMARK 3 S21: -0.0147 S22: -0.0288 S23: 0.1981 REMARK 3 S31: 0.5674 S32: -0.2796 S33: 0.0936 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0835 0.5845 6.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1753 REMARK 3 T33: 0.1732 T12: 0.0068 REMARK 3 T13: -0.0033 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.3093 L22: 1.2705 REMARK 3 L33: 0.5748 L12: -0.7055 REMARK 3 L13: -0.0297 L23: -0.2297 REMARK 3 S TENSOR REMARK 3 S11: -0.0515 S12: -0.1106 S13: 0.1028 REMARK 3 S21: 0.0488 S22: 0.0665 S23: -0.0614 REMARK 3 S31: -0.0765 S32: 0.0276 S33: 0.0060 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3308 14.8041 -4.6056 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.2455 REMARK 3 T33: 0.2232 T12: -0.0502 REMARK 3 T13: 0.0615 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.5114 L22: 3.1980 REMARK 3 L33: 7.8351 L12: 0.9213 REMARK 3 L13: -2.0547 L23: -2.3180 REMARK 3 S TENSOR REMARK 3 S11: 0.4442 S12: -0.0722 S13: 0.3579 REMARK 3 S21: -0.0228 S22: 0.0117 S23: -0.0240 REMARK 3 S31: -0.6761 S32: 0.8050 S33: -0.3337 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5676 7.7445 -7.1072 REMARK 3 T TENSOR REMARK 3 T11: 0.2424 T22: 0.2166 REMARK 3 T33: 0.1896 T12: 0.0233 REMARK 3 T13: -0.0080 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 1.8505 L22: 1.7660 REMARK 3 L33: 1.9360 L12: -0.1359 REMARK 3 L13: 0.3108 L23: 0.0303 REMARK 3 S TENSOR REMARK 3 S11: 0.2075 S12: 0.2520 S13: 0.1605 REMARK 3 S21: -0.2960 S22: -0.1341 S23: 0.1298 REMARK 3 S31: 0.0555 S32: -0.0054 S33: -0.0636 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3362 3.6388 -7.2530 REMARK 3 T TENSOR REMARK 3 T11: 0.2561 T22: 0.2241 REMARK 3 T33: 0.2433 T12: 0.0124 REMARK 3 T13: -0.0626 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.6311 L22: 2.6409 REMARK 3 L33: 1.9889 L12: -0.3012 REMARK 3 L13: 0.3932 L23: -0.1809 REMARK 3 S TENSOR REMARK 3 S11: 0.2485 S12: 0.0025 S13: -0.1516 REMARK 3 S21: -0.4531 S22: -0.0560 S23: 0.4082 REMARK 3 S31: 0.1989 S32: -0.0279 S33: -0.1342 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6024 -4.6681 -5.5659 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.1800 REMARK 3 T33: 0.2321 T12: -0.0366 REMARK 3 T13: -0.0328 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.5904 L22: 1.7159 REMARK 3 L33: 2.6203 L12: -0.3901 REMARK 3 L13: -2.2215 L23: 0.1621 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: 0.2610 S13: -0.4236 REMARK 3 S21: 0.0582 S22: -0.0617 S23: 0.2606 REMARK 3 S31: 0.3594 S32: -0.5324 S33: -0.0107 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2043 0.4672 -3.4677 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1482 REMARK 3 T33: 0.1725 T12: 0.0015 REMARK 3 T13: 0.0003 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.9486 L22: 2.6014 REMARK 3 L33: 2.8446 L12: -0.2365 REMARK 3 L13: -0.1012 L23: 0.7924 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: 0.1702 S13: 0.1429 REMARK 3 S21: -0.1393 S22: -0.1159 S23: -0.0990 REMARK 3 S31: -0.2830 S32: 0.0929 S33: 0.0495 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7092 -8.3786 10.7958 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.2368 REMARK 3 T33: 0.2600 T12: 0.0230 REMARK 3 T13: -0.0210 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 3.7069 L22: 2.8220 REMARK 3 L33: 3.4564 L12: 1.3432 REMARK 3 L13: -2.1964 L23: -1.5140 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: -0.2564 S13: -0.4793 REMARK 3 S21: 0.3690 S22: 0.1016 S23: -0.0403 REMARK 3 S31: 0.2805 S32: -0.0602 S33: -0.0379 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 3.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 39.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 15.84 REMARK 200 R MERGE (I) : 0.22300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 15.56 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YM8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% NACL, 8% PEG6000, 100 MM NA REMARK 280 -ACETATE (PH3.6), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.84000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.78750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.84000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.26250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.78750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.26250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 101 O HOH A 301 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 68 28.10 -140.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 60 O REMARK 620 2 CYS A 64 O 90.4 REMARK 620 3 SER A 72 OG 90.0 166.3 REMARK 620 4 ARG A 73 O 94.9 91.6 102.1 REMARK 620 5 HOH A 339 O 99.4 84.7 81.7 165.2 REMARK 620 6 HOH A 360 O 172.3 96.8 82.4 87.6 78.7 REMARK 620 N 1 2 3 4 5 DBREF 7YNU A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQADV 7YNU VAL A 31 UNP P00698 ALA 49 VARIANT SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN J2F ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS VAL ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU MODRES 7YNU J2F A 20 TYR MODIFIED RESIDUE HET J2F A 20 22 HET NA A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET CL A 206 1 HET ACT A 207 4 HETNAM J2F (2~{S})-2-AZANYL-3-[4-[(2-NITROPHENYL) HETNAM 2 J2F METHOXY]PHENYL]PROPANOIC ACID HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 1 J2F C16 H16 N2 O5 FORMUL 2 NA NA 1+ FORMUL 3 CL 5(CL 1-) FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *100(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 SER A 24 ASN A 37 1 14 HELIX 3 AA3 PRO A 79 SER A 85 5 7 HELIX 4 AA4 ILE A 88 SER A 100 1 13 HELIX 5 AA5 ASN A 103 ALA A 107 5 5 HELIX 6 AA6 TRP A 108 CYS A 115 1 8 HELIX 7 AA7 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.04 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.09 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.07 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.05 LINK C ASN A 19 N J2F A 20 1555 1555 1.43 LINK C J2F A 20 N ARG A 21 1555 1555 1.43 LINK O SER A 60 NA NA A 201 1555 1555 2.34 LINK O CYS A 64 NA NA A 201 1555 1555 2.43 LINK OG SER A 72 NA NA A 201 1555 1555 2.46 LINK O ARG A 73 NA NA A 201 1555 1555 2.45 LINK NA NA A 201 O HOH A 339 1555 1555 2.52 LINK NA NA A 201 O HOH A 360 1555 1555 2.41 CRYST1 79.680 79.680 37.050 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012550 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026991 0.00000