HEADER TRANSCRIPTION 01-AUG-22 7YNW TITLE CRYSTAL STRUCTURE OF O-(2-NITROBENZYL)-L-TYROSINE-TRNA SYTHETASE IN TITLE 2 COMPLEX WITH O-(2-NITROBENZYL)-L-TYROSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TYROSYL-TRNA SYNTHETASE,TYRRS; COMPND 5 EC: 6.1.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 5 GENE: TYRS, MJ0389; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONNATURAL AMINO ACID, CELL-FREE PROTEIN SYNTHESIS, CAGED AMINO ACID, KEYWDS 2 O-(2-NITROBENZYL)-L-TYROSINE AMINO-ACYL TRNA SYNTHETASE, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,M.SHIROUZU REVDAT 4 29-NOV-23 7YNW 1 REMARK REVDAT 3 15-NOV-23 7YNW 1 ATOM REVDAT 2 05-OCT-22 7YNW 1 JRNL REVDAT 1 21-SEP-22 7YNW 0 JRNL AUTH T.HOSAKA,K.KATSURA,Y.ISHIZUKA-KATSURA,K.HANADA,K.ITO, JRNL AUTH 2 Y.TOMABECHI,M.INOUE,R.AKASAKA,C.TAKEMOTO,M.SHIROUZU JRNL TITL CRYSTAL STRUCTURE OF AN ARCHAEAL TYROSYL-TRNA SYNTHETASE JRNL TITL 2 BOUND TO PHOTOCAGED L-TYROSINE AND ITS POTENTIAL APPLICATION JRNL TITL 3 TO TIME-RESOLVED X-RAY CRYSTALLOGRAPHY. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36142308 JRNL DOI 10.3390/IJMS231810399 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1-4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.460 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 26487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5900 - 7.8100 0.99 2016 138 0.1904 0.1864 REMARK 3 2 7.8000 - 6.2000 1.00 2019 139 0.2381 0.3047 REMARK 3 3 6.2000 - 5.4200 1.00 2011 138 0.2742 0.3325 REMARK 3 4 5.4200 - 4.9200 1.00 1983 134 0.2373 0.2452 REMARK 3 5 4.9200 - 4.5700 1.00 2034 147 0.2180 0.2661 REMARK 3 6 4.5700 - 4.3000 0.99 2010 131 0.2260 0.3061 REMARK 3 7 4.3000 - 4.0900 0.99 2000 135 0.2482 0.3025 REMARK 3 8 4.0900 - 3.9100 0.98 1959 139 0.2636 0.3249 REMARK 3 9 3.9100 - 3.7600 0.99 1995 137 0.2804 0.3819 REMARK 3 10 3.7600 - 3.6300 0.99 1955 134 0.2756 0.3719 REMARK 3 11 3.6300 - 3.5100 0.99 2027 146 0.2886 0.3356 REMARK 3 12 3.5100 - 3.4100 0.99 2008 143 0.3213 0.3785 REMARK 3 13 3.4100 - 3.3200 0.99 1958 140 0.3340 0.3543 REMARK 3 14 3.3200 - 3.2400 0.98 1968 135 0.3492 0.4359 REMARK 3 15 3.2400 - 3.1700 0.98 1995 135 0.3872 0.3938 REMARK 3 16 3.1700 - 3.1000 0.97 1919 133 0.4006 0.4999 REMARK 3 17 3.1000 - 3.0400 0.98 2028 134 0.3891 0.4216 REMARK 3 18 3.0400 - 2.9800 0.98 1909 138 0.3971 0.4318 REMARK 3 19 2.9800 - 2.9300 0.99 2039 145 0.4217 0.4476 REMARK 3 20 2.9300 - 2.8800 0.98 1938 131 0.4256 0.3478 REMARK 3 21 2.8800 - 2.8300 0.98 1997 139 0.4270 0.4612 REMARK 3 22 2.8300 - 2.7900 0.99 1965 138 0.4310 0.5189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.525 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.022 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 113.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 136.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5038 REMARK 3 ANGLE : 0.589 6757 REMARK 3 CHIRALITY : 0.041 738 REMARK 3 PLANARITY : 0.005 869 REMARK 3 DIHEDRAL : 25.973 2001 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7719 38.6562 -0.5093 REMARK 3 T TENSOR REMARK 3 T11: 1.4360 T22: 1.2633 REMARK 3 T33: 0.5658 T12: -0.5797 REMARK 3 T13: 0.0751 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 7.2915 L22: 5.6182 REMARK 3 L33: 7.2227 L12: 0.1435 REMARK 3 L13: 2.5655 L23: 3.5940 REMARK 3 S TENSOR REMARK 3 S11: -0.5447 S12: 0.4580 S13: 0.1659 REMARK 3 S21: -1.2731 S22: 0.6963 S23: -0.4365 REMARK 3 S31: -1.9768 S32: -0.0533 S33: 0.0418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4773 37.3676 14.2146 REMARK 3 T TENSOR REMARK 3 T11: 1.0086 T22: 0.9882 REMARK 3 T33: 0.5164 T12: -0.2839 REMARK 3 T13: -0.0666 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 7.1667 L22: 4.0355 REMARK 3 L33: 6.2062 L12: -1.3069 REMARK 3 L13: 1.3226 L23: 1.9083 REMARK 3 S TENSOR REMARK 3 S11: -0.4374 S12: -0.3027 S13: -0.0932 REMARK 3 S21: -0.5198 S22: 0.4286 S23: 0.1127 REMARK 3 S31: -0.8110 S32: -0.6249 S33: -0.0437 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0089 24.8185 -15.2934 REMARK 3 T TENSOR REMARK 3 T11: 1.8407 T22: 1.1728 REMARK 3 T33: 0.7804 T12: -0.5868 REMARK 3 T13: 0.0637 T23: -0.1128 REMARK 3 L TENSOR REMARK 3 L11: 1.3054 L22: 7.5767 REMARK 3 L33: 7.7775 L12: -0.6456 REMARK 3 L13: 0.6137 L23: 2.3600 REMARK 3 S TENSOR REMARK 3 S11: -0.4813 S12: -0.0479 S13: -0.3465 REMARK 3 S21: -1.6378 S22: 0.9802 S23: 0.0816 REMARK 3 S31: 0.0198 S32: 0.4007 S33: -0.7424 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.5179 -2.0443 31.4697 REMARK 3 T TENSOR REMARK 3 T11: 1.5338 T22: 0.7687 REMARK 3 T33: 0.5592 T12: 0.3115 REMARK 3 T13: 0.0207 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 7.0173 L22: 7.1582 REMARK 3 L33: 8.0701 L12: 1.2751 REMARK 3 L13: 2.2050 L23: -4.7959 REMARK 3 S TENSOR REMARK 3 S11: 0.2112 S12: 0.1407 S13: -0.2854 REMARK 3 S21: -0.9069 S22: -0.1922 S23: 0.0823 REMARK 3 S31: 0.9710 S32: 0.8244 S33: 0.0233 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.0989 3.0669 45.7787 REMARK 3 T TENSOR REMARK 3 T11: 1.1966 T22: 0.9040 REMARK 3 T33: 0.5469 T12: 0.1666 REMARK 3 T13: 0.0766 T23: 0.0553 REMARK 3 L TENSOR REMARK 3 L11: 5.7882 L22: 3.9540 REMARK 3 L33: 6.9395 L12: 0.5582 REMARK 3 L13: 0.0405 L23: -0.3792 REMARK 3 S TENSOR REMARK 3 S11: 0.3125 S12: 0.0018 S13: 0.3686 REMARK 3 S21: -0.3263 S22: -0.4063 S23: -0.0743 REMARK 3 S31: -0.2879 S32: 0.6991 S33: -0.0020 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 183 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.4618 9.8818 16.8533 REMARK 3 T TENSOR REMARK 3 T11: 1.4248 T22: 0.9134 REMARK 3 T33: 0.7013 T12: 0.4318 REMARK 3 T13: 0.0191 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 5.2294 L22: 3.4976 REMARK 3 L33: 8.4469 L12: -1.7257 REMARK 3 L13: 3.1509 L23: -2.3507 REMARK 3 S TENSOR REMARK 3 S11: 0.4954 S12: 0.3911 S13: 0.1751 REMARK 3 S21: -0.9632 S22: -0.2403 S23: 0.3868 REMARK 3 S31: 0.3918 S32: -0.3409 S33: -0.2503 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YNW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26487 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 41.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 36.04 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 34.08 REMARK 200 R MERGE FOR SHELL (I) : 4.01600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1J1U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG300, 3% PEG8000, 100 MM TRIS REMARK 280 -HCL (PH8.0), 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 325.80000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 162.90000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 244.35000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.45000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 407.25000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 325.80000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 162.90000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 81.45000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 244.35000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 407.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 81.45000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 307 REMARK 465 ASP A 308 REMARK 465 PRO A 309 REMARK 465 GLU A 310 REMARK 465 ASN A 311 REMARK 465 LEU A 312 REMARK 465 TYR A 313 REMARK 465 PHE A 314 REMARK 465 GLN A 315 REMARK 465 PRO B 309 REMARK 465 GLU B 310 REMARK 465 ASN B 311 REMARK 465 LEU B 312 REMARK 465 TYR B 313 REMARK 465 PHE B 314 REMARK 465 GLN B 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 78 38.35 -91.31 REMARK 500 ASN A 211 42.49 -87.56 REMARK 500 TYR A 247 -61.98 -106.09 REMARK 500 GLU B 108 -20.20 -140.56 REMARK 500 ASN B 211 56.55 -95.98 REMARK 500 LYS B 228 43.42 -104.05 REMARK 500 PRO B 258 150.35 -49.51 REMARK 500 LYS B 280 8.31 59.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YNW A 1 306 UNP Q57834 SYY_METJA 1 306 DBREF 7YNW B 1 306 UNP Q57834 SYY_METJA 1 306 SEQADV 7YNW GLY A 32 UNP Q57834 TYR 32 CONFLICT SEQADV 7YNW GLY A 65 UNP Q57834 LEU 65 CONFLICT SEQADV 7YNW GLU A 108 UNP Q57834 PHE 108 CONFLICT SEQADV 7YNW SER A 158 UNP Q57834 ASP 158 CONFLICT SEQADV 7YNW GLU A 162 UNP Q57834 LEU 162 CONFLICT SEQADV 7YNW ARG A 286 UNP Q57834 ASP 286 CONFLICT SEQADV 7YNW SER A 307 UNP Q57834 EXPRESSION TAG SEQADV 7YNW ASP A 308 UNP Q57834 EXPRESSION TAG SEQADV 7YNW PRO A 309 UNP Q57834 EXPRESSION TAG SEQADV 7YNW GLU A 310 UNP Q57834 EXPRESSION TAG SEQADV 7YNW ASN A 311 UNP Q57834 EXPRESSION TAG SEQADV 7YNW LEU A 312 UNP Q57834 EXPRESSION TAG SEQADV 7YNW TYR A 313 UNP Q57834 EXPRESSION TAG SEQADV 7YNW PHE A 314 UNP Q57834 EXPRESSION TAG SEQADV 7YNW GLN A 315 UNP Q57834 EXPRESSION TAG SEQADV 7YNW GLY B 32 UNP Q57834 TYR 32 CONFLICT SEQADV 7YNW GLY B 65 UNP Q57834 LEU 65 CONFLICT SEQADV 7YNW GLU B 108 UNP Q57834 PHE 108 CONFLICT SEQADV 7YNW SER B 158 UNP Q57834 ASP 158 CONFLICT SEQADV 7YNW GLU B 162 UNP Q57834 LEU 162 CONFLICT SEQADV 7YNW ARG B 286 UNP Q57834 ASP 286 CONFLICT SEQADV 7YNW SER B 307 UNP Q57834 EXPRESSION TAG SEQADV 7YNW ASP B 308 UNP Q57834 EXPRESSION TAG SEQADV 7YNW PRO B 309 UNP Q57834 EXPRESSION TAG SEQADV 7YNW GLU B 310 UNP Q57834 EXPRESSION TAG SEQADV 7YNW ASN B 311 UNP Q57834 EXPRESSION TAG SEQADV 7YNW LEU B 312 UNP Q57834 EXPRESSION TAG SEQADV 7YNW TYR B 313 UNP Q57834 EXPRESSION TAG SEQADV 7YNW PHE B 314 UNP Q57834 EXPRESSION TAG SEQADV 7YNW GLN B 315 UNP Q57834 EXPRESSION TAG SEQRES 1 A 315 MET ASP GLU PHE GLU MET ILE LYS ARG ASN THR SER GLU SEQRES 2 A 315 ILE ILE SER GLU GLU GLU LEU ARG GLU VAL LEU LYS LYS SEQRES 3 A 315 ASP GLU LYS SER ALA GLY ILE GLY PHE GLU PRO SER GLY SEQRES 4 A 315 LYS ILE HIS LEU GLY HIS TYR LEU GLN ILE LYS LYS MET SEQRES 5 A 315 ILE ASP LEU GLN ASN ALA GLY PHE ASP ILE ILE ILE GLY SEQRES 6 A 315 LEU ALA ASP LEU HIS ALA TYR LEU ASN GLN LYS GLY GLU SEQRES 7 A 315 LEU ASP GLU ILE ARG LYS ILE GLY ASP TYR ASN LYS LYS SEQRES 8 A 315 VAL PHE GLU ALA MET GLY LEU LYS ALA LYS TYR VAL TYR SEQRES 9 A 315 GLY SER GLU GLU GLN LEU ASP LYS ASP TYR THR LEU ASN SEQRES 10 A 315 VAL TYR ARG LEU ALA LEU LYS THR THR LEU LYS ARG ALA SEQRES 11 A 315 ARG ARG SER MET GLU LEU ILE ALA ARG GLU ASP GLU ASN SEQRES 12 A 315 PRO LYS VAL ALA GLU VAL ILE TYR PRO ILE MET GLN VAL SEQRES 13 A 315 ASN SER ILE HIS TYR GLU GLY VAL ASP VAL ALA VAL GLY SEQRES 14 A 315 GLY MET GLU GLN ARG LYS ILE HIS MET LEU ALA ARG GLU SEQRES 15 A 315 LEU LEU PRO LYS LYS VAL VAL CYS ILE HIS ASN PRO VAL SEQRES 16 A 315 LEU THR GLY LEU ASP GLY GLU GLY LYS MET SER SER SER SEQRES 17 A 315 LYS GLY ASN PHE ILE ALA VAL ASP ASP SER PRO GLU GLU SEQRES 18 A 315 ILE ARG ALA LYS ILE LYS LYS ALA TYR CYS PRO ALA GLY SEQRES 19 A 315 VAL VAL GLU GLY ASN PRO ILE MET GLU ILE ALA LYS TYR SEQRES 20 A 315 PHE LEU GLU TYR PRO LEU THR ILE LYS ARG PRO GLU LYS SEQRES 21 A 315 PHE GLY GLY ASP LEU THR VAL ASN SER TYR GLU GLU LEU SEQRES 22 A 315 GLU SER LEU PHE LYS ASN LYS GLU LEU HIS PRO MET ARG SEQRES 23 A 315 LEU LYS ASN ALA VAL ALA GLU GLU LEU ILE LYS ILE LEU SEQRES 24 A 315 GLU PRO ILE ARG LYS ARG LEU SER ASP PRO GLU ASN LEU SEQRES 25 A 315 TYR PHE GLN SEQRES 1 B 315 MET ASP GLU PHE GLU MET ILE LYS ARG ASN THR SER GLU SEQRES 2 B 315 ILE ILE SER GLU GLU GLU LEU ARG GLU VAL LEU LYS LYS SEQRES 3 B 315 ASP GLU LYS SER ALA GLY ILE GLY PHE GLU PRO SER GLY SEQRES 4 B 315 LYS ILE HIS LEU GLY HIS TYR LEU GLN ILE LYS LYS MET SEQRES 5 B 315 ILE ASP LEU GLN ASN ALA GLY PHE ASP ILE ILE ILE GLY SEQRES 6 B 315 LEU ALA ASP LEU HIS ALA TYR LEU ASN GLN LYS GLY GLU SEQRES 7 B 315 LEU ASP GLU ILE ARG LYS ILE GLY ASP TYR ASN LYS LYS SEQRES 8 B 315 VAL PHE GLU ALA MET GLY LEU LYS ALA LYS TYR VAL TYR SEQRES 9 B 315 GLY SER GLU GLU GLN LEU ASP LYS ASP TYR THR LEU ASN SEQRES 10 B 315 VAL TYR ARG LEU ALA LEU LYS THR THR LEU LYS ARG ALA SEQRES 11 B 315 ARG ARG SER MET GLU LEU ILE ALA ARG GLU ASP GLU ASN SEQRES 12 B 315 PRO LYS VAL ALA GLU VAL ILE TYR PRO ILE MET GLN VAL SEQRES 13 B 315 ASN SER ILE HIS TYR GLU GLY VAL ASP VAL ALA VAL GLY SEQRES 14 B 315 GLY MET GLU GLN ARG LYS ILE HIS MET LEU ALA ARG GLU SEQRES 15 B 315 LEU LEU PRO LYS LYS VAL VAL CYS ILE HIS ASN PRO VAL SEQRES 16 B 315 LEU THR GLY LEU ASP GLY GLU GLY LYS MET SER SER SER SEQRES 17 B 315 LYS GLY ASN PHE ILE ALA VAL ASP ASP SER PRO GLU GLU SEQRES 18 B 315 ILE ARG ALA LYS ILE LYS LYS ALA TYR CYS PRO ALA GLY SEQRES 19 B 315 VAL VAL GLU GLY ASN PRO ILE MET GLU ILE ALA LYS TYR SEQRES 20 B 315 PHE LEU GLU TYR PRO LEU THR ILE LYS ARG PRO GLU LYS SEQRES 21 B 315 PHE GLY GLY ASP LEU THR VAL ASN SER TYR GLU GLU LEU SEQRES 22 B 315 GLU SER LEU PHE LYS ASN LYS GLU LEU HIS PRO MET ARG SEQRES 23 B 315 LEU LYS ASN ALA VAL ALA GLU GLU LEU ILE LYS ILE LEU SEQRES 24 B 315 GLU PRO ILE ARG LYS ARG LEU SER ASP PRO GLU ASN LEU SEQRES 25 B 315 TYR PHE GLN HET J2F A 501 23 HET J2F B 501 23 HETNAM J2F (2~{S})-2-AZANYL-3-[4-[(2-NITROPHENYL) HETNAM 2 J2F METHOXY]PHENYL]PROPANOIC ACID FORMUL 3 J2F 2(C16 H16 N2 O5) FORMUL 5 HOH *81(H2 O) HELIX 1 AA1 ASP A 2 ARG A 9 1 8 HELIX 2 AA2 SER A 16 LYS A 25 1 10 HELIX 3 AA3 HIS A 42 ALA A 58 1 17 HELIX 4 AA4 ASP A 68 ASN A 74 1 7 HELIX 5 AA5 GLU A 81 GLY A 97 1 17 HELIX 6 AA6 GLY A 105 GLN A 109 1 5 HELIX 7 AA7 ASP A 111 LEU A 123 1 13 HELIX 8 AA8 THR A 126 SER A 133 1 8 HELIX 9 AA9 VAL A 146 GLY A 163 1 18 HELIX 10 AB1 GLN A 173 LEU A 184 1 12 HELIX 11 AB2 SER A 218 LYS A 228 1 11 HELIX 12 AB3 ASN A 239 PHE A 248 1 10 HELIX 13 AB4 SER A 269 ASN A 279 1 11 HELIX 14 AB5 HIS A 283 ARG A 305 1 23 HELIX 15 AB6 ASP B 2 ARG B 9 1 8 HELIX 16 AB7 SER B 16 LYS B 26 1 11 HELIX 17 AB8 HIS B 42 ALA B 58 1 17 HELIX 18 AB9 LEU B 69 ASN B 74 1 6 HELIX 19 AC1 GLU B 81 MET B 96 1 16 HELIX 20 AC2 ASP B 111 LEU B 123 1 13 HELIX 21 AC3 THR B 126 MET B 134 1 9 HELIX 22 AC4 GLU B 135 ALA B 138 5 4 HELIX 23 AC5 LYS B 145 GLY B 163 1 19 HELIX 24 AC6 GLN B 173 LEU B 184 1 12 HELIX 25 AC7 SER B 218 LYS B 228 1 11 HELIX 26 AC8 ASN B 239 PHE B 248 1 10 HELIX 27 AC9 PRO B 258 GLY B 262 5 5 HELIX 28 AD1 SER B 269 ASN B 279 1 11 HELIX 29 AD2 HIS B 283 SER B 307 1 25 SHEET 1 AA1 6 GLU A 13 ILE A 15 0 SHEET 2 AA1 6 VAL A 189 ASN A 193 -1 O HIS A 192 N GLU A 13 SHEET 3 AA1 6 VAL A 166 GLY A 170 1 N ALA A 167 O VAL A 189 SHEET 4 AA1 6 SER A 30 PHE A 35 1 N GLY A 32 O VAL A 168 SHEET 5 AA1 6 ASP A 61 LEU A 66 1 O GLY A 65 N PHE A 35 SHEET 6 AA1 6 LYS A 101 TYR A 104 1 O VAL A 103 N ILE A 64 SHEET 1 AA2 2 LEU A 253 ILE A 255 0 SHEET 2 AA2 2 LEU A 265 VAL A 267 -1 O VAL A 267 N LEU A 253 SHEET 1 AA3 6 GLU B 13 ILE B 15 0 SHEET 2 AA3 6 VAL B 189 ASN B 193 -1 O CYS B 190 N ILE B 15 SHEET 3 AA3 6 VAL B 166 GLY B 170 1 N ALA B 167 O VAL B 189 SHEET 4 AA3 6 SER B 30 PHE B 35 1 N GLY B 32 O VAL B 166 SHEET 5 AA3 6 ASP B 61 LEU B 66 1 O GLY B 65 N PHE B 35 SHEET 6 AA3 6 LYS B 101 TYR B 104 1 O VAL B 103 N ILE B 64 SHEET 1 AA4 2 LEU B 253 ILE B 255 0 SHEET 2 AA4 2 LEU B 265 VAL B 267 -1 O VAL B 267 N LEU B 253 CISPEP 1 ILE A 15 SER A 16 0 -1.39 CISPEP 2 TYR A 251 PRO A 252 0 6.35 CISPEP 3 ILE B 15 SER B 16 0 1.52 CISPEP 4 TYR B 251 PRO B 252 0 4.19 CRYST1 83.480 83.480 488.700 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011979 0.006916 0.000000 0.00000 SCALE2 0.000000 0.013832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002046 0.00000