HEADER HYDROLASE 01-AUG-22 7YO6 TITLE BIFUNCTIONAL XYLOSIDASE/GLUCOSIDASE LXYL WITH INTERMEDIATE SUBSTRATE TITLE 2 XYLOSE FOR 5 SEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-D-XYLOSIDASE/BETA-D-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LENTINULA EDODES; SOURCE 3 ORGANISM_COMMON: SHIITAKE MUSHROOM; SOURCE 4 ORGANISM_TAXID: 5353; SOURCE 5 GENE: LXYL-P1-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASES, XYLOSIDASES, BIFUNCTIONAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.Y.YANG REVDAT 2 13-NOV-24 7YO6 1 REMARK REVDAT 1 09-AUG-23 7YO6 0 JRNL AUTH L.Y.YANG JRNL TITL BIFUNCTIONAL XYLOSIDASE/GLUCOSIDASE LXYL WITH INTERMEDIATE JRNL TITL 2 SUBSTRATE XYLOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 120.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 55135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2812 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3789 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11419 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 467 REMARK 3 SOLVENT ATOMS : 731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.40000 REMARK 3 B22 (A**2) : -1.69000 REMARK 3 B33 (A**2) : -1.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.815 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.328 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 12215 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 11109 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 16740 ; 1.925 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 25605 ; 1.082 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1511 ; 7.119 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 498 ;35.330 ;24.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1711 ;15.978 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;20.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1944 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 13792 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 2700 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7YO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.539 REMARK 200 RESOLUTION RANGE LOW (A) : 200.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7EY1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 15% PEG3350, PH 8.0 TRIS REMARK 280 -HCL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.98000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 120.98000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.79700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 90.96000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.79700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.96000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.98000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.79700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 90.96000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.98000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.79700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 90.96000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, F, G, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 79.59400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 120.98000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -120.98000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ARG A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 PHE A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 SER A 22 REMARK 465 GLY A 23 REMARK 465 LEU A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 GLU A 29 REMARK 465 ARG A 30 REMARK 465 SER A 31 REMARK 465 ILE A 32 REMARK 465 PHE A 33 REMARK 465 ARG A 34 REMARK 465 ARG A 35 REMARK 465 ASP A 36 REMARK 465 LEU A 37 REMARK 465 ASN A 38 REMARK 465 SER A 39 REMARK 465 THR A 40 REMARK 465 GLY A 41 REMARK 465 ASP A 42 REMARK 465 GLU A 43 REMARK 465 SER A 44 REMARK 465 ASN A 45 REMARK 465 SER A 46 REMARK 465 THR A 47 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ARG B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 LEU B 8 REMARK 465 ALA B 9 REMARK 465 VAL B 10 REMARK 465 LEU B 11 REMARK 465 PHE B 12 REMARK 465 SER B 13 REMARK 465 VAL B 14 REMARK 465 SER B 15 REMARK 465 PRO B 16 REMARK 465 ALA B 17 REMARK 465 LEU B 18 REMARK 465 ALA B 19 REMARK 465 TYR B 20 REMARK 465 PHE B 21 REMARK 465 SER B 22 REMARK 465 GLY B 23 REMARK 465 LEU B 24 REMARK 465 GLY B 25 REMARK 465 LEU B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 GLU B 29 REMARK 465 ARG B 30 REMARK 465 SER B 31 REMARK 465 ILE B 32 REMARK 465 PHE B 33 REMARK 465 ARG B 34 REMARK 465 ARG B 35 REMARK 465 ASP B 36 REMARK 465 LEU B 37 REMARK 465 ASN B 38 REMARK 465 SER B 39 REMARK 465 THR B 40 REMARK 465 GLY B 41 REMARK 465 ASP B 42 REMARK 465 GLU B 43 REMARK 465 SER B 44 REMARK 465 ASN B 45 REMARK 465 SER B 46 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 48 CG CD OE1 NE2 REMARK 470 ASN A 718 CG OD1 ND2 REMARK 470 GLN B 48 CG CD OE1 NE2 REMARK 470 ASN B 718 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 342 C4 NAG A 901 1.37 REMARK 500 ND2 ASN B 342 C4 NAG B 901 1.37 REMARK 500 O1 MAN C 3 O5 NAG C 4 1.64 REMARK 500 OD1 ASP B 300 O4 XYL B 904 1.94 REMARK 500 OD1 ASP A 300 O2 XYZ A 906 1.95 REMARK 500 O HOH A 1244 O HOH A 1310 2.13 REMARK 500 O4 MAN C 3 C1 MAN E 1 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 391 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 727 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 763 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 270 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 391 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 391 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU B 776 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 58 -70.99 -75.13 REMARK 500 TRP A 176 -18.84 -48.64 REMARK 500 THR A 179 -100.60 -129.03 REMARK 500 LEU A 248 -68.36 -103.70 REMARK 500 GLN A 285 -81.59 -84.05 REMARK 500 THR A 289 -65.37 -98.74 REMARK 500 LEU A 328 31.00 -98.03 REMARK 500 TRP A 332 -124.21 -106.56 REMARK 500 ALA A 386 140.56 -177.42 REMARK 500 LYS A 422 -95.64 -80.52 REMARK 500 SER A 449 10.78 -141.20 REMARK 500 TYR A 584 -129.94 62.10 REMARK 500 GLU A 589 47.40 -99.64 REMARK 500 ALA A 629 129.90 -39.61 REMARK 500 ASP A 643 -131.68 44.98 REMARK 500 SER A 685 135.81 -39.04 REMARK 500 ASP A 697 -167.17 -128.48 REMARK 500 ASN A 700 160.19 170.77 REMARK 500 LYS B 58 -73.00 -73.63 REMARK 500 THR B 179 -90.84 -141.67 REMARK 500 LEU B 248 -71.37 -92.31 REMARK 500 ASN B 272 54.85 39.26 REMARK 500 ASN B 273 23.58 47.49 REMARK 500 SER B 278 35.81 -143.49 REMARK 500 GLN B 285 -72.03 -87.78 REMARK 500 TRP B 332 -127.84 -104.03 REMARK 500 ALA B 386 132.73 179.70 REMARK 500 LYS B 422 -97.88 -94.20 REMARK 500 HIS B 423 58.51 -141.60 REMARK 500 SER B 449 13.06 -147.40 REMARK 500 ASN B 555 64.35 -151.00 REMARK 500 TYR B 584 -129.06 67.73 REMARK 500 GLU B 589 50.49 -96.93 REMARK 500 ALA B 629 130.00 -39.97 REMARK 500 ASP B 643 -120.51 39.89 REMARK 500 SER B 663 -169.32 -115.85 REMARK 500 ASP B 697 -157.89 -93.38 REMARK 500 THR B 699 50.31 -110.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1351 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1352 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1353 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B1375 DISTANCE = 6.87 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN E 1 REMARK 610 NAG A 901 REMARK 610 NAG B 901 DBREF 7YO6 A 1 803 UNP G8GLP2 G8GLP2_LENED 1 803 DBREF 7YO6 B 1 803 UNP G8GLP2 G8GLP2_LENED 1 803 SEQRES 1 A 803 MET PHE PRO ALA ARG LEU SER LEU ALA VAL LEU PHE SER SEQRES 2 A 803 VAL SER PRO ALA LEU ALA TYR PHE SER GLY LEU GLY LEU SEQRES 3 A 803 GLY SER GLU ARG SER ILE PHE ARG ARG ASP LEU ASN SER SEQRES 4 A 803 THR GLY ASP GLU SER ASN SER THR GLN TRP PRO ALA PRO SEQRES 5 A 803 LEU ALA ASN GLY GLY LYS SER TRP ALA SER ALA PHE LYS SEQRES 6 A 803 LYS ALA LYS ALA THR VAL THR GLU MET THR VAL GLU GLU SEQRES 7 A 803 LEU ALA ASN ILE THR SER GLY VAL ILE GLY LEU CYS SER SEQRES 8 A 803 GLY VAL THR GLY ALA VAL THR ARG LEU GLY ILE PRO GLU SEQRES 9 A 803 PHE CYS LEU GLN ASP GLY PRO ILE GLY PRO ARG GLY VAL SEQRES 10 A 803 HIS GLY SER SER GLN PHE PRO ALA GLY LEU THR VAL ALA SEQRES 11 A 803 ALA THR TRP ASP ARG THR LEU MET TYR ALA ARG ALA ARG SEQRES 12 A 803 GLY MET GLY GLN GLU PHE HIS ASP GLN GLY VAL HIS LEU SEQRES 13 A 803 ALA LEU ALA PRO VAL THR GLY GLY PRO LEU GLY ARG THR SEQRES 14 A 803 PRO LEU ASN GLY ARG GLY TRP GLU GLY THR PHE ALA ASP SEQRES 15 A 803 PRO TYR ALA CYS GLY GLU ALA SER TYR LEU SER VAL LYS SEQRES 16 A 803 GLY LEU THR ASP ALA GLY VAL ALA THR VAL SER LYS HIS SEQRES 17 A 803 TRP ILE ALA TYR GLU GLN GLU THR SER ARG ASN LEU TYR SEQRES 18 A 803 ILE ASP ILE ASP GLY VAL SER GLN ALA ASP ILE GLN LEU SEQRES 19 A 803 PRO ILE SER SER ASN VAL ASP ASP LEU THR MET HIS GLU SEQRES 20 A 803 LEU TYR MET TRP SER PHE ALA GLU ALA VAL ARG ALA GLY SEQRES 21 A 803 THR ASN HIS ILE MET CYS SER TYR ASN ARG ILE ASN ASN SEQRES 22 A 803 THR HIS SER CYS SER ASN ALA LYS GLY LEU ASN GLN LEU SEQRES 23 A 803 LEU LYS THR GLU LEU ASN PHE GLN GLY GLY VAL VAL SER SEQRES 24 A 803 ASP TRP GLY GLY GLN TRP ASP SER VAL PRO ALA ALA GLU SEQRES 25 A 803 ASN GLY LEU ASP VAL ALA MET PRO GLY LYS GLY PHE LEU SEQRES 26 A 803 GLY ALA LEU GLY ASP PHE TRP GLY ALA THR LEU VAL GLU SEQRES 27 A 803 LEU ILE ASN ASN GLY THR VAL SER GLU ASP LEU VAL ARG SEQRES 28 A 803 ASP LYS ALA VAL ARG ILE LEU THR GLY TYR TYR TYR LEU SEQRES 29 A 803 GLY GLN ASP THR ASN PRO PRO PRO PRO PHE VAL TYR ASN SEQRES 30 A 803 THR ILE GLY ALA PRO THR LEU ASN ALA THR SER GLY TYR SEQRES 31 A 803 ARG ASN VAL ARG LYS PRO GLY THR ALA GLU LEU ILE LYS SEQRES 32 A 803 GLU ILE GLY SER ALA SER VAL THR LEU LEU LYS ASN THR SEQRES 33 A 803 GLY SER LEU PRO LEU LYS HIS PRO GLN ARG ILE ALA VAL SEQRES 34 A 803 LEU GLY ASN ASP ALA THR TYR ASN VAL LEU GLY PRO ASN SEQRES 35 A 803 ALA CYS GLY LEU ALA ASN SER ALA CYS ASP ILE ASP ASN SEQRES 36 A 803 LEU ASN GLY THR LEU THR THR GLY GLY GLY SER GLY SER SEQRES 37 A 803 ALA LEU SER PRO TYR THR ILE THR PRO LEU GLU ALA LEU SEQRES 38 A 803 GLN LYS ARG ALA ILE GLU ASP ASN ALA GLU ILE ALA ALA SEQRES 39 A 803 VAL VAL ALA ASN SER ASN THR THR THR GLY ALA GLU ASP SEQRES 40 A 803 ALA ILE ALA ALA LEU LEU PRO ASP ALA ASP VAL THR PHE SEQRES 41 A 803 VAL PHE LEU ASN ARG TYR SER GLU GLU GLY ALA ASP ALA SEQRES 42 A 803 PRO ASP PHE SER LEU GLY GLY ASP GLY ASP ASN LEU MET SEQRES 43 A 803 ASP LEU ALA VAL THR TYR SER SER ASN VAL VAL VAL VAL SEQRES 44 A 803 ILE HIS THR THR GLY VAL VAL ASP ILE GLU LYS TRP ALA SEQRES 45 A 803 ASP ASN PRO ASN VAL THR ALA ILE LEU VAL ALA TYR LEU SEQRES 46 A 803 PRO GLY GLN GLU ALA GLY ASN SER LEU VAL PRO VAL LEU SEQRES 47 A 803 TYR GLY ASP VAL ALA PRO SER GLY LYS LEU PRO TRP THR SEQRES 48 A 803 TRP GLY LYS SER ILE ASP ASP TYR VAL PRO ASN GLY VAL SEQRES 49 A 803 VAL TYR THR ASP ALA TYR SER PRO GLN SER ASN PHE THR SEQRES 50 A 803 GLU GLY VAL PHE ILE ASP TYR ARG TRP PHE ASP LYS MET SEQRES 51 A 803 GLY ILE THR PRO ARG TYR GLU PHE GLY PHE GLY LEU SER SEQRES 52 A 803 TYR THR THR PHE THR TYR SER ASN LEU ILE VAL ASP HIS SEQRES 53 A 803 GLY ARG TRP ALA LYS ASP TYR SER SER VAL MET GLU THR SEQRES 54 A 803 ALA GLU PRO PHE ALA GLU TRP ASP GLY THR ASN SER LEU SEQRES 55 A 803 TYR ASP VAL ILE PHE THR VAL PHE ALA THR ILE THR ASN SEQRES 56 A 803 THR GLY ASN LEU THR GLY SER GLU VAL ALA GLN LEU TYR SEQRES 57 A 803 ILE SER ILE PRO GLY ASP ASN GLN PRO VAL ARG GLN LEU SEQRES 58 A 803 ARG GLY PHE ASP LYS ILE LYS ASP LEU PRO VAL GLY ASP SEQRES 59 A 803 SER ALA VAL VAL THR PHE PRO ILE ARG ARG LYS ASP VAL SEQRES 60 A 803 SER SER TRP SER VAL VAL ASP GLN LEU TRP TYR VAL PRO SEQRES 61 A 803 ASN GLY ASP PHE LEU ILE SER VAL GLY GLY SER SER ARG SEQRES 62 A 803 ASP LEU PRO LEU ASN THR THR TRP THR PRO SEQRES 1 B 803 MET PHE PRO ALA ARG LEU SER LEU ALA VAL LEU PHE SER SEQRES 2 B 803 VAL SER PRO ALA LEU ALA TYR PHE SER GLY LEU GLY LEU SEQRES 3 B 803 GLY SER GLU ARG SER ILE PHE ARG ARG ASP LEU ASN SER SEQRES 4 B 803 THR GLY ASP GLU SER ASN SER THR GLN TRP PRO ALA PRO SEQRES 5 B 803 LEU ALA ASN GLY GLY LYS SER TRP ALA SER ALA PHE LYS SEQRES 6 B 803 LYS ALA LYS ALA THR VAL THR GLU MET THR VAL GLU GLU SEQRES 7 B 803 LEU ALA ASN ILE THR SER GLY VAL ILE GLY LEU CYS SER SEQRES 8 B 803 GLY VAL THR GLY ALA VAL THR ARG LEU GLY ILE PRO GLU SEQRES 9 B 803 PHE CYS LEU GLN ASP GLY PRO ILE GLY PRO ARG GLY VAL SEQRES 10 B 803 HIS GLY SER SER GLN PHE PRO ALA GLY LEU THR VAL ALA SEQRES 11 B 803 ALA THR TRP ASP ARG THR LEU MET TYR ALA ARG ALA ARG SEQRES 12 B 803 GLY MET GLY GLN GLU PHE HIS ASP GLN GLY VAL HIS LEU SEQRES 13 B 803 ALA LEU ALA PRO VAL THR GLY GLY PRO LEU GLY ARG THR SEQRES 14 B 803 PRO LEU ASN GLY ARG GLY TRP GLU GLY THR PHE ALA ASP SEQRES 15 B 803 PRO TYR ALA CYS GLY GLU ALA SER TYR LEU SER VAL LYS SEQRES 16 B 803 GLY LEU THR ASP ALA GLY VAL ALA THR VAL SER LYS HIS SEQRES 17 B 803 TRP ILE ALA TYR GLU GLN GLU THR SER ARG ASN LEU TYR SEQRES 18 B 803 ILE ASP ILE ASP GLY VAL SER GLN ALA ASP ILE GLN LEU SEQRES 19 B 803 PRO ILE SER SER ASN VAL ASP ASP LEU THR MET HIS GLU SEQRES 20 B 803 LEU TYR MET TRP SER PHE ALA GLU ALA VAL ARG ALA GLY SEQRES 21 B 803 THR ASN HIS ILE MET CYS SER TYR ASN ARG ILE ASN ASN SEQRES 22 B 803 THR HIS SER CYS SER ASN ALA LYS GLY LEU ASN GLN LEU SEQRES 23 B 803 LEU LYS THR GLU LEU ASN PHE GLN GLY GLY VAL VAL SER SEQRES 24 B 803 ASP TRP GLY GLY GLN TRP ASP SER VAL PRO ALA ALA GLU SEQRES 25 B 803 ASN GLY LEU ASP VAL ALA MET PRO GLY LYS GLY PHE LEU SEQRES 26 B 803 GLY ALA LEU GLY ASP PHE TRP GLY ALA THR LEU VAL GLU SEQRES 27 B 803 LEU ILE ASN ASN GLY THR VAL SER GLU ASP LEU VAL ARG SEQRES 28 B 803 ASP LYS ALA VAL ARG ILE LEU THR GLY TYR TYR TYR LEU SEQRES 29 B 803 GLY GLN ASP THR ASN PRO PRO PRO PRO PHE VAL TYR ASN SEQRES 30 B 803 THR ILE GLY ALA PRO THR LEU ASN ALA THR SER GLY TYR SEQRES 31 B 803 ARG ASN VAL ARG LYS PRO GLY THR ALA GLU LEU ILE LYS SEQRES 32 B 803 GLU ILE GLY SER ALA SER VAL THR LEU LEU LYS ASN THR SEQRES 33 B 803 GLY SER LEU PRO LEU LYS HIS PRO GLN ARG ILE ALA VAL SEQRES 34 B 803 LEU GLY ASN ASP ALA THR TYR ASN VAL LEU GLY PRO ASN SEQRES 35 B 803 ALA CYS GLY LEU ALA ASN SER ALA CYS ASP ILE ASP ASN SEQRES 36 B 803 LEU ASN GLY THR LEU THR THR GLY GLY GLY SER GLY SER SEQRES 37 B 803 ALA LEU SER PRO TYR THR ILE THR PRO LEU GLU ALA LEU SEQRES 38 B 803 GLN LYS ARG ALA ILE GLU ASP ASN ALA GLU ILE ALA ALA SEQRES 39 B 803 VAL VAL ALA ASN SER ASN THR THR THR GLY ALA GLU ASP SEQRES 40 B 803 ALA ILE ALA ALA LEU LEU PRO ASP ALA ASP VAL THR PHE SEQRES 41 B 803 VAL PHE LEU ASN ARG TYR SER GLU GLU GLY ALA ASP ALA SEQRES 42 B 803 PRO ASP PHE SER LEU GLY GLY ASP GLY ASP ASN LEU MET SEQRES 43 B 803 ASP LEU ALA VAL THR TYR SER SER ASN VAL VAL VAL VAL SEQRES 44 B 803 ILE HIS THR THR GLY VAL VAL ASP ILE GLU LYS TRP ALA SEQRES 45 B 803 ASP ASN PRO ASN VAL THR ALA ILE LEU VAL ALA TYR LEU SEQRES 46 B 803 PRO GLY GLN GLU ALA GLY ASN SER LEU VAL PRO VAL LEU SEQRES 47 B 803 TYR GLY ASP VAL ALA PRO SER GLY LYS LEU PRO TRP THR SEQRES 48 B 803 TRP GLY LYS SER ILE ASP ASP TYR VAL PRO ASN GLY VAL SEQRES 49 B 803 VAL TYR THR ASP ALA TYR SER PRO GLN SER ASN PHE THR SEQRES 50 B 803 GLU GLY VAL PHE ILE ASP TYR ARG TRP PHE ASP LYS MET SEQRES 51 B 803 GLY ILE THR PRO ARG TYR GLU PHE GLY PHE GLY LEU SER SEQRES 52 B 803 TYR THR THR PHE THR TYR SER ASN LEU ILE VAL ASP HIS SEQRES 53 B 803 GLY ARG TRP ALA LYS ASP TYR SER SER VAL MET GLU THR SEQRES 54 B 803 ALA GLU PRO PHE ALA GLU TRP ASP GLY THR ASN SER LEU SEQRES 55 B 803 TYR ASP VAL ILE PHE THR VAL PHE ALA THR ILE THR ASN SEQRES 56 B 803 THR GLY ASN LEU THR GLY SER GLU VAL ALA GLN LEU TYR SEQRES 57 B 803 ILE SER ILE PRO GLY ASP ASN GLN PRO VAL ARG GLN LEU SEQRES 58 B 803 ARG GLY PHE ASP LYS ILE LYS ASP LEU PRO VAL GLY ASP SEQRES 59 B 803 SER ALA VAL VAL THR PHE PRO ILE ARG ARG LYS ASP VAL SEQRES 60 B 803 SER SER TRP SER VAL VAL ASP GLN LEU TRP TYR VAL PRO SEQRES 61 B 803 ASN GLY ASP PHE LEU ILE SER VAL GLY GLY SER SER ARG SEQRES 62 B 803 ASP LEU PRO LEU ASN THR THR TRP THR PRO HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET NAG C 4 14 HET NAG D 1 14 HET NAG D 2 14 HET MAN E 1 11 HET NAG E 2 14 HET MAN F 1 12 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET NAG A 901 14 HET NAG A 902 14 HET BKR A 903 59 HET NAG A 904 15 HET NAG A 905 14 HET XYZ A 906 10 HET NAG B 901 14 HET NAG B 902 14 HET BKR B 903 59 HET XYL B 904 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BKR DEACETYLTAXOL HETNAM XYZ BETA-D-XYLOFURANOSE HETNAM XYL XYLITOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYZ BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN XYL D-XYLITOL FORMUL 3 NAG 21(C8 H15 N O6) FORMUL 3 MAN 3(C6 H12 O6) FORMUL 13 BKR 2(C45 H49 N O13) FORMUL 16 XYZ C5 H10 O5 FORMUL 20 XYL C5 H12 O5 FORMUL 21 HOH *731(H2 O) HELIX 1 AA1 TRP A 60 GLU A 73 1 14 HELIX 2 AA2 THR A 75 THR A 83 1 9 HELIX 3 AA3 ALA A 125 ALA A 131 1 7 HELIX 4 AA4 ASP A 134 GLN A 152 1 19 HELIX 5 AA5 ARG A 174 GLY A 178 5 5 HELIX 6 AA6 ASP A 182 ALA A 200 1 19 HELIX 7 AA7 GLN A 229 GLN A 233 1 5 HELIX 8 AA8 ASP A 241 LEU A 248 1 8 HELIX 9 AA9 TYR A 249 ALA A 259 1 11 HELIX 10 AB1 ASN A 279 ASN A 284 1 6 HELIX 11 AB2 SER A 307 GLY A 314 1 8 HELIX 12 AB3 GLY A 323 ALA A 327 5 5 HELIX 13 AB4 GLY A 333 ASN A 342 1 10 HELIX 14 AB5 SER A 346 LEU A 364 1 19 HELIX 15 AB6 GLY A 397 VAL A 410 1 14 HELIX 16 AB7 ASN A 432 THR A 435 5 4 HELIX 17 AB8 THR A 476 ASP A 488 1 13 HELIX 18 AB9 GLY A 504 LEU A 513 1 10 HELIX 19 AC1 ASP A 541 SER A 553 1 13 HELIX 20 AC2 ILE A 568 ASP A 573 1 6 HELIX 21 AC3 PRO A 586 GLN A 588 5 3 HELIX 22 AC4 GLU A 589 TYR A 599 1 11 HELIX 23 AC5 SER A 615 TYR A 619 5 5 HELIX 24 AC6 ASP A 643 MET A 650 1 8 HELIX 25 AC7 LYS A 765 SER A 768 5 4 HELIX 26 AC8 TRP B 60 GLU B 73 1 14 HELIX 27 AC9 THR B 75 THR B 83 1 9 HELIX 28 AD1 VAL B 97 GLY B 101 5 5 HELIX 29 AD2 ALA B 125 ALA B 131 1 7 HELIX 30 AD3 ASP B 134 GLY B 153 1 20 HELIX 31 AD4 ARG B 174 GLY B 178 5 5 HELIX 32 AD5 ASP B 182 ALA B 200 1 19 HELIX 33 AD6 ALA B 230 ILE B 232 5 3 HELIX 34 AD7 ASP B 241 LEU B 248 1 8 HELIX 35 AD8 TYR B 249 GLY B 260 1 12 HELIX 36 AD9 ASN B 279 ASN B 284 1 6 HELIX 37 AE1 SER B 307 ASN B 313 1 7 HELIX 38 AE2 GLY B 323 ALA B 327 5 5 HELIX 39 AE3 GLY B 333 ASN B 342 1 10 HELIX 40 AE4 SER B 346 LEU B 364 1 19 HELIX 41 AE5 GLY B 397 VAL B 410 1 14 HELIX 42 AE6 ASN B 432 THR B 435 5 4 HELIX 43 AE7 THR B 476 ASP B 488 1 13 HELIX 44 AE8 GLY B 504 LEU B 513 1 10 HELIX 45 AE9 ASP B 541 SER B 553 1 13 HELIX 46 AF1 ILE B 568 ASP B 573 1 6 HELIX 47 AF2 PRO B 586 GLN B 588 5 3 HELIX 48 AF3 GLU B 589 TYR B 599 1 11 HELIX 49 AF4 SER B 615 TYR B 619 5 5 HELIX 50 AF5 ILE B 642 MET B 650 1 9 HELIX 51 AF6 LYS B 765 SER B 768 5 4 SHEET 1 AA1 6 GLY A 92 THR A 94 0 SHEET 2 AA1 6 PHE A 105 GLN A 108 -1 O LEU A 107 N GLY A 92 SHEET 3 AA1 6 LEU A 156 ALA A 157 1 O LEU A 156 N GLN A 108 SHEET 4 AA1 6 ALA A 203 TRP A 209 1 O ALA A 203 N ALA A 157 SHEET 5 AA1 6 HIS A 263 CYS A 266 1 O MET A 265 N TRP A 209 SHEET 6 AA1 6 GLY A 296 SER A 299 1 O VAL A 298 N ILE A 264 SHEET 1 AA2 2 ASP A 223 ILE A 224 0 SHEET 2 AA2 2 VAL A 227 SER A 228 -1 O VAL A 227 N ILE A 224 SHEET 1 AA3 4 THR A 274 HIS A 275 0 SHEET 2 AA3 4 ARG A 270 ILE A 271 -1 N ILE A 271 O THR A 274 SHEET 3 AA3 4 SER A 237 ASN A 239 1 N SER A 238 O ARG A 270 SHEET 4 AA3 4 GLN A 633 ASN A 635 1 O SER A 634 N SER A 237 SHEET 1 AA4 6 THR A 411 ASN A 415 0 SHEET 2 AA4 6 VAL A 577 TYR A 584 -1 O VAL A 582 N THR A 411 SHEET 3 AA4 6 VAL A 556 THR A 562 1 N VAL A 558 O ALA A 579 SHEET 4 AA4 6 VAL A 518 ARG A 525 1 N LEU A 523 O VAL A 559 SHEET 5 AA4 6 ARG A 426 LEU A 430 1 N ALA A 428 O PHE A 520 SHEET 6 AA4 6 GLU A 491 VAL A 495 1 O VAL A 495 N VAL A 429 SHEET 1 AA5 3 PHE A 667 ASP A 675 0 SHEET 2 AA5 3 VAL A 705 ASN A 715 -1 O THR A 712 N SER A 670 SHEET 3 AA5 3 SER A 755 ARG A 763 -1 O VAL A 758 N ALA A 711 SHEET 1 AA6 4 GLN A 740 LEU A 750 0 SHEET 2 AA6 4 GLY A 721 SER A 730 -1 N ILE A 729 O GLN A 740 SHEET 3 AA6 4 PHE A 784 GLY A 789 -1 O SER A 787 N TYR A 728 SHEET 4 AA6 4 LEU A 797 TRP A 801 -1 O TRP A 801 N PHE A 784 SHEET 1 AA7 2 SER A 769 SER A 771 0 SHEET 2 AA7 2 LEU A 776 TYR A 778 -1 O LEU A 776 N SER A 771 SHEET 1 AA8 6 GLY B 92 VAL B 93 0 SHEET 2 AA8 6 CYS B 106 ASP B 109 -1 O LEU B 107 N GLY B 92 SHEET 3 AA8 6 LEU B 156 LEU B 158 1 O LEU B 156 N GLN B 108 SHEET 4 AA8 6 ALA B 203 TRP B 209 1 O ALA B 203 N ALA B 157 SHEET 5 AA8 6 HIS B 263 CYS B 266 1 O MET B 265 N TRP B 209 SHEET 6 AA8 6 GLY B 296 SER B 299 1 O VAL B 298 N ILE B 264 SHEET 1 AA9 2 ASP B 223 ILE B 224 0 SHEET 2 AA9 2 VAL B 227 SER B 228 -1 O VAL B 227 N ILE B 224 SHEET 1 AB1 4 THR B 274 HIS B 275 0 SHEET 2 AB1 4 ARG B 270 ILE B 271 -1 N ILE B 271 O THR B 274 SHEET 3 AB1 4 SER B 237 ASN B 239 1 N SER B 238 O ARG B 270 SHEET 4 AB1 4 GLN B 633 ASN B 635 1 O SER B 634 N ASN B 239 SHEET 1 AB2 6 THR B 411 ASN B 415 0 SHEET 2 AB2 6 VAL B 577 TYR B 584 -1 O VAL B 582 N THR B 411 SHEET 3 AB2 6 VAL B 556 THR B 562 1 N VAL B 558 O LEU B 581 SHEET 4 AB2 6 VAL B 518 ARG B 525 1 N LEU B 523 O VAL B 559 SHEET 5 AB2 6 ARG B 426 LEU B 430 1 N ALA B 428 O PHE B 520 SHEET 6 AB2 6 GLU B 491 VAL B 495 1 O ALA B 493 N VAL B 429 SHEET 1 AB3 3 PHE B 667 ASP B 675 0 SHEET 2 AB3 3 VAL B 705 ASN B 715 -1 O THR B 712 N SER B 670 SHEET 3 AB3 3 SER B 755 ARG B 763 -1 O VAL B 758 N ALA B 711 SHEET 1 AB4 4 GLN B 740 LEU B 750 0 SHEET 2 AB4 4 GLY B 721 SER B 730 -1 N ILE B 729 O GLN B 740 SHEET 3 AB4 4 PHE B 784 GLY B 789 -1 O GLY B 789 N GLN B 726 SHEET 4 AB4 4 LEU B 797 TRP B 801 -1 O TRP B 801 N PHE B 784 SHEET 1 AB5 2 SER B 769 SER B 771 0 SHEET 2 AB5 2 LEU B 776 TYR B 778 -1 O LEU B 776 N SER B 771 SSBOND 1 CYS A 90 CYS A 106 1555 1555 2.04 SSBOND 2 CYS A 266 CYS A 277 1555 1555 2.07 SSBOND 3 CYS A 444 CYS A 451 1555 1555 2.10 SSBOND 4 CYS B 90 CYS B 106 1555 1555 2.07 SSBOND 5 CYS B 266 CYS B 277 1555 1555 2.07 SSBOND 6 CYS B 444 CYS B 451 1555 1555 2.11 LINK ND2 ASN A 81 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN A 272 C1 NAG D 1 1555 1555 1.42 LINK ND2 ASN A 385 C1 NAG A 905 1555 1555 1.45 LINK ND2 ASN A 457 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN A 576 C1 NAG A 902 1555 1555 1.44 LINK ND2 ASN B 81 C1 NAG J 1 1555 1555 1.45 LINK ND2 ASN B 272 C1 NAG C 1 1555 1555 1.42 LINK ND2 ASN B 457 C1 NAG H 1 1555 1555 1.42 LINK ND2 ASN B 576 C1 NAG B 902 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C3 MAN C 3 1555 1555 1.54 LINK O1 MAN C 3 C1 NAG C 4 1555 1555 1.37 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O3 MAN E 1 C1 NAG E 2 1555 1555 1.45 LINK O3 MAN F 1 C1 NAG F 2 1555 1555 1.48 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.46 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.43 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.43 CISPEP 1 ASP A 109 GLY A 110 0 2.45 CISPEP 2 ALA A 159 PRO A 160 0 -2.72 CISPEP 3 GLY A 164 PRO A 165 0 -1.63 CISPEP 4 LYS A 207 HIS A 208 0 -4.27 CISPEP 5 TRP A 209 ILE A 210 0 3.44 CISPEP 6 MET A 319 PRO A 320 0 4.10 CISPEP 7 ALA A 381 PRO A 382 0 -2.87 CISPEP 8 LEU A 419 PRO A 420 0 2.22 CISPEP 9 ASP B 109 GLY B 110 0 -3.08 CISPEP 10 ALA B 159 PRO B 160 0 2.35 CISPEP 11 GLY B 164 PRO B 165 0 -9.61 CISPEP 12 LYS B 207 HIS B 208 0 -6.69 CISPEP 13 TRP B 209 ILE B 210 0 6.81 CISPEP 14 MET B 319 PRO B 320 0 4.68 CISPEP 15 ALA B 381 PRO B 382 0 11.09 CISPEP 16 LEU B 419 PRO B 420 0 -4.73 CRYST1 79.594 181.920 241.960 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012564 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005497 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004133 0.00000