HEADER PROTEIN TRANSPORT 01-AUG-22 7YO8 TITLE CRYSTAL STRUCTURE OF FISSION YEAST HFL1 LIR FUSED TO HUMAN GABARAPL2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN 184 HOMOLOG C30D11.06C,GAMMA- COMPND 3 AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: GABA(A) RECEPTOR-ASSOCIATED PROTEIN-LIKE 2,GANGLIOSIDE COMPND 6 EXPRESSION FACTOR 2,GEF-2,GENERAL PROTEIN TRANSPORT FACTOR P16,GOLGI- COMPND 7 ASSOCIATED ATPASE ENHANCER OF 16 KDA,GATE-16,MAP1 LIGHT CHAIN 3- COMPND 8 RELATED PROTEIN; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: FISSION YEAST, HUMAN; SOURCE 4 ORGANISM_TAXID: 4896, 9606; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SPAC30D11.06C, GABARAPL2, FLC3A, GEF2; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AUTOPHAGY, VACUOLE, AUTOPHAGOSOME, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMASAKI,N.N.NODA REVDAT 3 29-NOV-23 7YO8 1 REMARK REVDAT 2 14-JUN-23 7YO8 1 JRNL REVDAT 1 02-NOV-22 7YO8 0 JRNL AUTH S.W.PARK,P.JEON,A.YAMASAKI,H.E.LEE,H.CHOI,J.Y.MUN,Y.W.JUN, JRNL AUTH 2 J.H.PARK,S.H.LEE,S.K.LEE,Y.K.LEE,H.K.SONG,M.LAZAROU,D.H.CHO, JRNL AUTH 3 M.KOMATSU,N.N.NODA,D.J.JANG,J.A.LEE JRNL TITL DEVELOPMENT OF NEW TOOLS TO STUDY MEMBRANE-ANCHORED JRNL TITL 2 MAMMALIAN ATG8 PROTEINS. JRNL REF AUTOPHAGY V. 19 1424 2023 JRNL REFN ESSN 1554-8635 JRNL PMID 36250672 JRNL DOI 10.1080/15548627.2022.2132040 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9100 - 3.2800 1.00 2680 142 0.1608 0.1841 REMARK 3 2 3.2800 - 2.6000 1.00 2534 133 0.1849 0.2116 REMARK 3 3 2.6000 - 2.2700 1.00 2481 131 0.1790 0.1987 REMARK 3 4 2.2700 - 2.0700 1.00 2461 129 0.1745 0.2229 REMARK 3 5 2.0700 - 1.9200 1.00 2431 128 0.1981 0.2324 REMARK 3 6 1.9200 - 1.8050 0.99 2429 128 0.2507 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.174 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.694 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1162 REMARK 3 ANGLE : 0.774 1570 REMARK 3 CHIRALITY : 0.057 173 REMARK 3 PLANARITY : 0.007 203 REMARK 3 DIHEDRAL : 14.431 439 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0368 3.3594 -13.5805 REMARK 3 T TENSOR REMARK 3 T11: 0.9496 T22: 0.7719 REMARK 3 T33: 0.6690 T12: -0.0212 REMARK 3 T13: 0.0341 T23: -0.1014 REMARK 3 L TENSOR REMARK 3 L11: 3.9153 L22: 5.4978 REMARK 3 L33: 4.5458 L12: 4.6003 REMARK 3 L13: 4.2203 L23: 4.9693 REMARK 3 S TENSOR REMARK 3 S11: -1.2663 S12: 0.3129 S13: 0.4705 REMARK 3 S21: -0.1855 S22: 0.1637 S23: -0.0457 REMARK 3 S31: -0.0233 S32: 0.4608 S33: 1.2080 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6761 -2.3607 -11.0099 REMARK 3 T TENSOR REMARK 3 T11: 0.5651 T22: 0.2339 REMARK 3 T33: 0.3641 T12: 0.0174 REMARK 3 T13: 0.1173 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 4.9998 L22: 3.1838 REMARK 3 L33: 8.1727 L12: -0.0827 REMARK 3 L13: -3.2338 L23: -0.8492 REMARK 3 S TENSOR REMARK 3 S11: -0.2288 S12: -0.5850 S13: -0.8741 REMARK 3 S21: 0.2601 S22: -0.2777 S23: 0.0726 REMARK 3 S31: 1.3606 S32: 0.2751 S33: 0.2286 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3222 -2.4513 -0.6135 REMARK 3 T TENSOR REMARK 3 T11: 0.5751 T22: 0.4559 REMARK 3 T33: 0.3265 T12: -0.0897 REMARK 3 T13: -0.0381 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.6620 L22: 0.8089 REMARK 3 L33: 7.2351 L12: 0.8816 REMARK 3 L13: -4.3281 L23: -1.7695 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: 1.0392 S13: -0.2741 REMARK 3 S21: -1.0520 S22: 0.5940 S23: 0.1146 REMARK 3 S31: -0.2557 S32: -1.0349 S33: 0.0344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 36 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7836 -4.1465 18.3481 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.1987 REMARK 3 T33: 0.2429 T12: 0.0129 REMARK 3 T13: -0.0191 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 4.3389 L22: 4.3004 REMARK 3 L33: 5.6640 L12: 0.8789 REMARK 3 L13: -1.9299 L23: -0.2353 REMARK 3 S TENSOR REMARK 3 S11: 0.1877 S12: -0.1306 S13: 0.8214 REMARK 3 S21: 0.1591 S22: -0.0021 S23: 0.4257 REMARK 3 S31: -0.4718 S32: -0.1398 S33: -0.0021 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9933 -13.8793 5.4459 REMARK 3 T TENSOR REMARK 3 T11: 0.1693 T22: 0.1720 REMARK 3 T33: 0.2156 T12: -0.0211 REMARK 3 T13: -0.0049 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.0411 L22: 2.9890 REMARK 3 L33: 4.1297 L12: -0.9183 REMARK 3 L13: -0.4445 L23: 1.3190 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.1525 S13: 0.1114 REMARK 3 S21: -0.3412 S22: -0.0486 S23: 0.1179 REMARK 3 S31: 0.0210 S32: -0.2156 S33: 0.1288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4554 -20.8707 8.5698 REMARK 3 T TENSOR REMARK 3 T11: 0.1737 T22: 0.2273 REMARK 3 T33: 0.2573 T12: -0.0190 REMARK 3 T13: 0.0433 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.7832 L22: 3.0253 REMARK 3 L33: 4.2567 L12: -0.3268 REMARK 3 L13: -0.0305 L23: 1.3529 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.0448 S13: -0.1885 REMARK 3 S21: 0.0332 S22: -0.1694 S23: 0.4086 REMARK 3 S31: 0.1617 S32: -0.2519 S33: 0.2422 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4928 -25.1180 3.5504 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.1626 REMARK 3 T33: 0.2113 T12: 0.0166 REMARK 3 T13: 0.0435 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.2761 L22: 3.0470 REMARK 3 L33: 3.9984 L12: -0.2039 REMARK 3 L13: 0.3740 L23: 1.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.1047 S12: 0.0378 S13: -0.1170 REMARK 3 S21: -0.0276 S22: 0.0892 S23: 0.1250 REMARK 3 S31: 0.0390 S32: 0.0333 S33: 0.0811 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6139 -20.5460 17.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.3120 REMARK 3 T33: 0.2604 T12: 0.0146 REMARK 3 T13: 0.0070 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 4.7049 L22: 5.8278 REMARK 3 L33: 3.6034 L12: -0.0391 REMARK 3 L13: -1.6086 L23: -0.7279 REMARK 3 S TENSOR REMARK 3 S11: -0.1626 S12: -0.6590 S13: 0.0976 REMARK 3 S21: 0.5856 S22: -0.0436 S23: -0.3177 REMARK 3 S31: 0.1409 S32: 0.4114 S33: 0.1676 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8014 -18.2117 0.9484 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1429 REMARK 3 T33: 0.1459 T12: 0.0284 REMARK 3 T13: -0.0109 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 2.0925 L22: 2.7481 REMARK 3 L33: 3.9836 L12: -0.6768 REMARK 3 L13: -1.4777 L23: 0.5349 REMARK 3 S TENSOR REMARK 3 S11: 0.0778 S12: 0.2030 S13: -0.0236 REMARK 3 S21: -0.1024 S22: -0.2464 S23: 0.0992 REMARK 3 S31: 0.3629 S32: -0.3644 S33: 0.1141 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15809 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.805 REMARK 200 RESOLUTION RANGE LOW (A) : 43.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.15420 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.97 REMARK 200 R MERGE FOR SHELL (I) : 1.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2 REMARK 200 STARTING MODEL: 4CO7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 3000, 0.1 M SODIUM CITRATE, PH REMARK 280 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.29000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 22.92500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 22.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 114.43500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 22.92500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 22.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.14500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 22.92500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 22.92500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 114.43500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 22.92500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 22.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.14500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.29000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 45.85000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -45.85000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 22 REMARK 465 GLY A 23 REMARK 465 ASP A 24 REMARK 465 TYR A 25 REMARK 465 LEU A 145 REMARK 465 PHE A 146 REMARK 465 GLN A 147 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LEU A 2 CG CD1 CD2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 MET A 26 CG SD CE REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 216 O HOH A 289 2.01 REMARK 500 OE2 GLU A 137 O HOH A 201 2.04 REMARK 500 O HOH A 308 O HOH A 320 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 341 O HOH A 347 6545 1.95 REMARK 500 O HOH A 300 O HOH A 341 6445 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 5 148.33 -179.42 REMARK 500 ILE A 6 97.58 -62.54 REMARK 500 GLN A 19 59.81 -101.99 REMARK 500 LYS A 27 57.13 -95.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 348 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 349 DISTANCE = 6.36 ANGSTROMS DBREF 7YO8 A 2 25 UNP Q09906 TM184_SCHPO 386 409 DBREF 7YO8 A 26 141 UNP P60520 GBRL2_HUMAN 1 116 SEQADV 7YO8 MET A 1 UNP Q09906 INITIATING METHIONINE SEQADV 7YO8 SER A 28 UNP P60520 TRP 3 ENGINEERED MUTATION SEQADV 7YO8 THR A 29 UNP P60520 MET 4 ENGINEERED MUTATION SEQADV 7YO8 LEU A 142 UNP P60520 EXPRESSION TAG SEQADV 7YO8 GLU A 143 UNP P60520 EXPRESSION TAG SEQADV 7YO8 VAL A 144 UNP P60520 EXPRESSION TAG SEQADV 7YO8 LEU A 145 UNP P60520 EXPRESSION TAG SEQADV 7YO8 PHE A 146 UNP P60520 EXPRESSION TAG SEQADV 7YO8 GLN A 147 UNP P60520 EXPRESSION TAG SEQRES 1 A 147 MET LEU GLN PHE GLU ILE ASP ASP GLU MET GLU PRO LEU SEQRES 2 A 147 TYR ASN GLN ALA LYS GLN MET ARG TYR GLY ASP TYR MET SEQRES 3 A 147 LYS SER THR PHE LYS GLU ASP HIS SER LEU GLU HIS ARG SEQRES 4 A 147 CYS VAL GLU SER ALA LYS ILE ARG ALA LYS TYR PRO ASP SEQRES 5 A 147 ARG VAL PRO VAL ILE VAL GLU LYS VAL SER GLY SER GLN SEQRES 6 A 147 ILE VAL ASP ILE ASP LYS ARG LYS TYR LEU VAL PRO SER SEQRES 7 A 147 ASP ILE THR VAL ALA GLN PHE MET TRP ILE ILE ARG LYS SEQRES 8 A 147 ARG ILE GLN LEU PRO SER GLU LYS ALA ILE PHE LEU PHE SEQRES 9 A 147 VAL ASP LYS THR VAL PRO GLN SER SER LEU THR MET GLY SEQRES 10 A 147 GLN LEU TYR GLU LYS GLU LYS ASP GLU ASP GLY PHE LEU SEQRES 11 A 147 TYR VAL ALA TYR SER GLY GLU ASN THR PHE GLY LEU GLU SEQRES 12 A 147 VAL LEU PHE GLN FORMUL 2 HOH *149(H2 O) HELIX 1 AA1 MET A 10 LYS A 18 1 9 HELIX 2 AA2 THR A 29 HIS A 34 1 6 HELIX 3 AA3 SER A 35 TYR A 50 1 16 HELIX 4 AA4 THR A 81 GLN A 94 1 14 HELIX 5 AA5 THR A 115 LYS A 124 1 10 SHEET 1 AA1 4 LYS A 73 PRO A 77 0 SHEET 2 AA1 4 ARG A 53 LYS A 60 -1 N VAL A 56 O TYR A 74 SHEET 3 AA1 4 LEU A 130 SER A 135 1 O VAL A 132 N ILE A 57 SHEET 4 AA1 4 PHE A 102 PHE A 104 -1 N PHE A 104 O ALA A 133 CRYST1 45.850 45.850 152.580 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006554 0.00000