HEADER DNA BINDING PROTEIN/DNA 02-AUG-22 7YOZ TITLE CRYO-EM STRUCTURE OF HUMAN SUBNUCLEOSOME (INTERMEDIATE FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: B, D, F, H; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: WIDOM601 DNA FW (145-MER); COMPND 14 CHAIN: I; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: WIDOM601 DNA RV (145-MER); COMPND 18 CHAIN: J; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3C1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H4C1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 22 ORGANISM_TAXID: 32630; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUBNUCLEOSOME, NUCLEAR PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR K.NOZAWA,Y.TAKIZAWA,H.KURUMIZAKA REVDAT 1 16-NOV-22 7YOZ 0 JRNL AUTH K.NOZAWA,Y.TAKIZAWA,L.PIERRAKEAS,C.SOGAWA-FUJIWARA, JRNL AUTH 2 K.SAIKUSA,S.AKASHI,E.LUK,H.KURUMIZAKA JRNL TITL CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE H3-H4 OCTASOME: A JRNL TITL 2 NUCLEOSOME-LIKE PARTICLE WITHOUT HISTONES H2A AND H2B. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 42119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36322721 JRNL DOI 10.1073/PNAS.2206542119 REMARK 2 REMARK 2 RESOLUTION. 4.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3LZ0 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.300 REMARK 3 NUMBER OF PARTICLES : 104987 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7YOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300030926. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF HUMAN REMARK 245 SUBNUCLEOSOME (INTERMEDIATE REMARK 245 FORM); HISTONE H3.1,HISTONE H4; REMARK 245 WIDOM601 DNA FW (145-MER), REMARK 245 WIDOM601 DNA RV (145-MER) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1250.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 156.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 HIS A 39 REMARK 465 ARG A 40 REMARK 465 TYR A 41 REMARK 465 ARG A 42 REMARK 465 PRO A 43 REMARK 465 GLY A 44 REMARK 465 THR A 45 REMARK 465 VAL A 46 REMARK 465 ALA A 47 REMARK 465 LEU A 48 REMARK 465 ARG A 49 REMARK 465 GLU A 50 REMARK 465 ILE A 51 REMARK 465 ARG A 52 REMARK 465 ARG A 53 REMARK 465 TYR A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 SER A 57 REMARK 465 THR A 58 REMARK 465 ALA A 135 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 LEU B 97 REMARK 465 TYR B 98 REMARK 465 GLY B 99 REMARK 465 PHE B 100 REMARK 465 GLY B 101 REMARK 465 GLY B 102 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 ARG C 2 REMARK 465 THR C 3 REMARK 465 LYS C 4 REMARK 465 GLN C 5 REMARK 465 THR C 6 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 LYS C 14 REMARK 465 ALA C 15 REMARK 465 PRO C 16 REMARK 465 ARG C 17 REMARK 465 LYS C 18 REMARK 465 GLN C 19 REMARK 465 LEU C 20 REMARK 465 ALA C 21 REMARK 465 THR C 22 REMARK 465 LYS C 23 REMARK 465 ALA C 24 REMARK 465 ALA C 25 REMARK 465 ARG C 26 REMARK 465 LYS C 27 REMARK 465 SER C 28 REMARK 465 ALA C 29 REMARK 465 PRO C 30 REMARK 465 ALA C 31 REMARK 465 THR C 32 REMARK 465 GLY C 33 REMARK 465 GLY C 34 REMARK 465 VAL C 35 REMARK 465 LYS C 36 REMARK 465 LYS C 37 REMARK 465 PRO C 38 REMARK 465 HIS C 39 REMARK 465 ARG C 40 REMARK 465 TYR C 41 REMARK 465 ARG C 42 REMARK 465 PRO C 43 REMARK 465 GLY C 44 REMARK 465 THR C 45 REMARK 465 VAL C 46 REMARK 465 ALA C 47 REMARK 465 LEU C 48 REMARK 465 ARG C 49 REMARK 465 GLU C 50 REMARK 465 ILE C 51 REMARK 465 ARG C 52 REMARK 465 ARG C 53 REMARK 465 TYR C 54 REMARK 465 GLN C 55 REMARK 465 LYS C 56 REMARK 465 SER C 57 REMARK 465 THR C 58 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 HIS D -1 REMARK 465 MET D 0 REMARK 465 SER D 1 REMARK 465 GLY D 2 REMARK 465 ARG D 3 REMARK 465 GLY D 4 REMARK 465 LYS D 5 REMARK 465 GLY D 6 REMARK 465 GLY D 7 REMARK 465 LYS D 8 REMARK 465 GLY D 9 REMARK 465 LEU D 10 REMARK 465 GLY D 11 REMARK 465 LYS D 12 REMARK 465 GLY D 13 REMARK 465 GLY D 14 REMARK 465 ALA D 15 REMARK 465 LYS D 16 REMARK 465 ARG D 17 REMARK 465 HIS D 18 REMARK 465 ARG D 19 REMARK 465 LYS D 20 REMARK 465 VAL D 21 REMARK 465 LEU D 22 REMARK 465 ARG D 23 REMARK 465 ASP D 24 REMARK 465 THR D 96 REMARK 465 LEU D 97 REMARK 465 TYR D 98 REMARK 465 GLY D 99 REMARK 465 PHE D 100 REMARK 465 GLY D 101 REMARK 465 GLY D 102 REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 HIS E -1 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 PRO E 38 REMARK 465 HIS E 39 REMARK 465 ARG E 40 REMARK 465 TYR E 41 REMARK 465 ARG E 42 REMARK 465 PRO E 43 REMARK 465 GLY E 44 REMARK 465 THR E 45 REMARK 465 VAL E 46 REMARK 465 ALA E 47 REMARK 465 LEU E 48 REMARK 465 ARG E 49 REMARK 465 GLU E 50 REMARK 465 ILE E 51 REMARK 465 ARG E 52 REMARK 465 ARG E 53 REMARK 465 TYR E 54 REMARK 465 GLN E 55 REMARK 465 LYS E 56 REMARK 465 SER E 57 REMARK 465 THR E 58 REMARK 465 ALA E 135 REMARK 465 GLY F -3 REMARK 465 SER F -2 REMARK 465 HIS F -1 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 ARG F 95 REMARK 465 THR F 96 REMARK 465 LEU F 97 REMARK 465 TYR F 98 REMARK 465 GLY F 99 REMARK 465 PHE F 100 REMARK 465 GLY F 101 REMARK 465 GLY F 102 REMARK 465 GLY G -3 REMARK 465 SER G -2 REMARK 465 HIS G -1 REMARK 465 MET G 0 REMARK 465 ALA G 1 REMARK 465 ARG G 2 REMARK 465 THR G 3 REMARK 465 LYS G 4 REMARK 465 GLN G 5 REMARK 465 THR G 6 REMARK 465 ALA G 7 REMARK 465 ARG G 8 REMARK 465 LYS G 9 REMARK 465 SER G 10 REMARK 465 THR G 11 REMARK 465 GLY G 12 REMARK 465 GLY G 13 REMARK 465 LYS G 14 REMARK 465 ALA G 15 REMARK 465 PRO G 16 REMARK 465 ARG G 17 REMARK 465 LYS G 18 REMARK 465 GLN G 19 REMARK 465 LEU G 20 REMARK 465 ALA G 21 REMARK 465 THR G 22 REMARK 465 LYS G 23 REMARK 465 ALA G 24 REMARK 465 ALA G 25 REMARK 465 ARG G 26 REMARK 465 LYS G 27 REMARK 465 SER G 28 REMARK 465 ALA G 29 REMARK 465 PRO G 30 REMARK 465 ALA G 31 REMARK 465 THR G 32 REMARK 465 GLY G 33 REMARK 465 GLY G 34 REMARK 465 VAL G 35 REMARK 465 LYS G 36 REMARK 465 LYS G 37 REMARK 465 PRO G 38 REMARK 465 HIS G 39 REMARK 465 ARG G 40 REMARK 465 TYR G 41 REMARK 465 ARG G 42 REMARK 465 PRO G 43 REMARK 465 GLY G 44 REMARK 465 THR G 45 REMARK 465 VAL G 46 REMARK 465 ALA G 47 REMARK 465 LEU G 48 REMARK 465 ARG G 49 REMARK 465 GLU G 50 REMARK 465 ILE G 51 REMARK 465 ARG G 52 REMARK 465 ARG G 53 REMARK 465 TYR G 54 REMARK 465 GLN G 55 REMARK 465 LYS G 56 REMARK 465 SER G 57 REMARK 465 THR G 58 REMARK 465 GLY H -3 REMARK 465 SER H -2 REMARK 465 HIS H -1 REMARK 465 MET H 0 REMARK 465 SER H 1 REMARK 465 GLY H 2 REMARK 465 ARG H 3 REMARK 465 GLY H 4 REMARK 465 LYS H 5 REMARK 465 GLY H 6 REMARK 465 GLY H 7 REMARK 465 LYS H 8 REMARK 465 GLY H 9 REMARK 465 LEU H 10 REMARK 465 GLY H 11 REMARK 465 LYS H 12 REMARK 465 GLY H 13 REMARK 465 GLY H 14 REMARK 465 ALA H 15 REMARK 465 LYS H 16 REMARK 465 ARG H 17 REMARK 465 HIS H 18 REMARK 465 ARG H 19 REMARK 465 LYS H 20 REMARK 465 VAL H 21 REMARK 465 LEU H 22 REMARK 465 ARG H 23 REMARK 465 THR H 96 REMARK 465 LEU H 97 REMARK 465 TYR H 98 REMARK 465 GLY H 99 REMARK 465 PHE H 100 REMARK 465 GLY H 101 REMARK 465 GLY H 102 REMARK 465 DA I -70 REMARK 465 DT I -69 REMARK 465 DC I -68 REMARK 465 DA I -67 REMARK 465 DG I -66 REMARK 465 DA I -65 REMARK 465 DA I -64 REMARK 465 DT I -63 REMARK 465 DC I -62 REMARK 465 DG I 60 REMARK 465 DA I 61 REMARK 465 DT I 62 REMARK 465 DA I 63 REMARK 465 DT I 64 REMARK 465 DA I 65 REMARK 465 DT I 66 REMARK 465 DA I 67 REMARK 465 DC I 68 REMARK 465 DA I 69 REMARK 465 DT I 70 REMARK 465 DC I 71 REMARK 465 DG I 72 REMARK 465 DA I 73 REMARK 465 DT I 74 REMARK 465 DA J -74 REMARK 465 DT J -73 REMARK 465 DC J -72 REMARK 465 DG J -71 REMARK 465 DA J -70 REMARK 465 DT J -69 REMARK 465 DG J -68 REMARK 465 DT J -67 REMARK 465 DA J -66 REMARK 465 DT J -65 REMARK 465 DA J -64 REMARK 465 DT J -63 REMARK 465 DA J -62 REMARK 465 DT J -61 REMARK 465 DC J -60 REMARK 465 DG J 62 REMARK 465 DA J 63 REMARK 465 DT J 64 REMARK 465 DT J 65 REMARK 465 DC J 66 REMARK 465 DT J 67 REMARK 465 DG J 68 REMARK 465 DA J 69 REMARK 465 DT J 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 61.84 64.34 REMARK 500 LYS D 79 -2.50 69.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-33991 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF HUMAN SUBNUCLEOSOME (INTERMEDIATE FORM) DBREF 7YOZ A 1 135 UNP P68431 H31_HUMAN 2 136 DBREF 7YOZ B 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7YOZ C 1 135 UNP P68431 H31_HUMAN 2 136 DBREF 7YOZ D 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7YOZ E 1 135 UNP P68431 H31_HUMAN 2 136 DBREF 7YOZ F 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7YOZ G 1 135 UNP P68431 H31_HUMAN 2 136 DBREF 7YOZ H 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 7YOZ I -70 74 PDB 7YOZ 7YOZ -70 74 DBREF 7YOZ J -74 70 PDB 7YOZ 7YOZ -74 70 SEQADV 7YOZ GLY A -3 UNP P68431 EXPRESSION TAG SEQADV 7YOZ SER A -2 UNP P68431 EXPRESSION TAG SEQADV 7YOZ HIS A -1 UNP P68431 EXPRESSION TAG SEQADV 7YOZ MET A 0 UNP P68431 EXPRESSION TAG SEQADV 7YOZ GLY B -3 UNP P62805 EXPRESSION TAG SEQADV 7YOZ SER B -2 UNP P62805 EXPRESSION TAG SEQADV 7YOZ HIS B -1 UNP P62805 EXPRESSION TAG SEQADV 7YOZ GLY C -3 UNP P68431 EXPRESSION TAG SEQADV 7YOZ SER C -2 UNP P68431 EXPRESSION TAG SEQADV 7YOZ HIS C -1 UNP P68431 EXPRESSION TAG SEQADV 7YOZ MET C 0 UNP P68431 EXPRESSION TAG SEQADV 7YOZ GLY D -3 UNP P62805 EXPRESSION TAG SEQADV 7YOZ SER D -2 UNP P62805 EXPRESSION TAG SEQADV 7YOZ HIS D -1 UNP P62805 EXPRESSION TAG SEQADV 7YOZ GLY E -3 UNP P68431 EXPRESSION TAG SEQADV 7YOZ SER E -2 UNP P68431 EXPRESSION TAG SEQADV 7YOZ HIS E -1 UNP P68431 EXPRESSION TAG SEQADV 7YOZ MET E 0 UNP P68431 EXPRESSION TAG SEQADV 7YOZ GLY F -3 UNP P62805 EXPRESSION TAG SEQADV 7YOZ SER F -2 UNP P62805 EXPRESSION TAG SEQADV 7YOZ HIS F -1 UNP P62805 EXPRESSION TAG SEQADV 7YOZ GLY G -3 UNP P68431 EXPRESSION TAG SEQADV 7YOZ SER G -2 UNP P68431 EXPRESSION TAG SEQADV 7YOZ HIS G -1 UNP P68431 EXPRESSION TAG SEQADV 7YOZ MET G 0 UNP P68431 EXPRESSION TAG SEQADV 7YOZ GLY H -3 UNP P62805 EXPRESSION TAG SEQADV 7YOZ SER H -2 UNP P62805 EXPRESSION TAG SEQADV 7YOZ HIS H -1 UNP P62805 EXPRESSION TAG SEQRES 1 A 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 A 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 A 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 A 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 A 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 A 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 A 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 A 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 A 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 A 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 A 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 B 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 B 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 B 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 B 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 B 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 B 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 B 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 B 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 B 106 GLY GLY SEQRES 1 C 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 C 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 C 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 C 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 C 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 C 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 C 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 C 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 C 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 C 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 C 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 D 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 D 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 D 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 D 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 D 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 D 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 D 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 D 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 D 106 GLY GLY SEQRES 1 E 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 E 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 E 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 E 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 E 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 E 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 E 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 E 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 E 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 E 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 E 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 F 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 F 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 F 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 F 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 F 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 F 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 F 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 F 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 F 106 GLY GLY SEQRES 1 G 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 G 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 G 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 G 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 G 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 G 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 G 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 G 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 G 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 G 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 G 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 H 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 H 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 H 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 H 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 H 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 H 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 H 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 H 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 H 106 GLY GLY SEQRES 1 I 145 DA DT DC DA DG DA DA DT DC DC DC DG DG SEQRES 2 I 145 DT DG DC DC DG DA DG DG DC DC DG DC DT SEQRES 3 I 145 DC DA DA DT DT DG DG DT DC DG DT DA DG SEQRES 4 I 145 DA DC DA DG DC DT DC DT DA DG DC DA DC SEQRES 5 I 145 DC DG DC DT DT DA DA DA DC DG DC DA DC SEQRES 6 I 145 DG DT DA DC DG DC DG DC DT DG DT DC DC SEQRES 7 I 145 DC DC DC DG DC DG DT DT DT DT DA DA DC SEQRES 8 I 145 DC DG DC DC DA DA DG DG DG DG DA DT DT SEQRES 9 I 145 DA DC DT DC DC DC DT DA DG DT DC DT DC SEQRES 10 I 145 DC DA DG DG DC DA DC DG DT DG DT DC DA SEQRES 11 I 145 DG DA DT DA DT DA DT DA DC DA DT DC DG SEQRES 12 I 145 DA DT SEQRES 1 J 145 DA DT DC DG DA DT DG DT DA DT DA DT DA SEQRES 2 J 145 DT DC DT DG DA DC DA DC DG DT DG DC DC SEQRES 3 J 145 DT DG DG DA DG DA DC DT DA DG DG DG DA SEQRES 4 J 145 DG DT DA DA DT DC DC DC DC DT DT DG DG SEQRES 5 J 145 DC DG DG DT DT DA DA DA DA DC DG DC DG SEQRES 6 J 145 DG DG DG DG DA DC DA DG DC DG DC DG DT SEQRES 7 J 145 DA DC DG DT DG DC DG DT DT DT DA DA DG SEQRES 8 J 145 DC DG DG DT DG DC DT DA DG DA DG DC DT SEQRES 9 J 145 DG DT DC DT DA DC DG DA DC DC DA DA DT SEQRES 10 J 145 DT DG DA DG DC DG DG DC DC DT DC DG DG SEQRES 11 J 145 DC DA DC DC DG DG DG DA DT DT DC DT DG SEQRES 12 J 145 DA DT HELIX 1 AA1 LYS A 64 LYS A 79 1 16 HELIX 2 AA2 GLN A 85 ALA A 114 1 30 HELIX 3 AA3 MET A 120 GLY A 132 1 13 HELIX 4 AA4 ASP B 24 ILE B 29 5 6 HELIX 5 AA5 THR B 30 GLY B 41 1 12 HELIX 6 AA6 LEU B 49 ALA B 76 1 28 HELIX 7 AA7 THR B 82 GLN B 93 1 12 HELIX 8 AA8 ARG C 63 LYS C 79 1 17 HELIX 9 AA9 GLN C 85 ALA C 114 1 30 HELIX 10 AB1 MET C 120 ARG C 131 1 12 HELIX 11 AB2 ASN D 25 ILE D 29 5 5 HELIX 12 AB3 THR D 30 GLY D 41 1 12 HELIX 13 AB4 LEU D 49 LYS D 77 1 29 HELIX 14 AB5 THR D 82 ARG D 95 1 14 HELIX 15 AB6 ARG E 63 LYS E 79 1 17 HELIX 16 AB7 GLN E 85 ALA E 114 1 30 HELIX 17 AB8 MET E 120 ARG E 131 1 12 HELIX 18 AB9 ASN F 25 ILE F 29 5 5 HELIX 19 AC1 THR F 30 GLY F 41 1 12 HELIX 20 AC2 LEU F 49 ALA F 76 1 28 HELIX 21 AC3 THR F 82 GLN F 93 1 12 HELIX 22 AC4 ARG G 63 LYS G 79 1 17 HELIX 23 AC5 GLN G 85 ALA G 114 1 30 HELIX 24 AC6 MET G 120 GLY G 132 1 13 HELIX 25 AC7 ASP H 24 ILE H 29 5 6 HELIX 26 AC8 THR H 30 GLY H 41 1 12 HELIX 27 AC9 LEU H 49 ALA H 76 1 28 HELIX 28 AD1 THR H 82 GLN H 93 1 12 SHEET 1 AA1 2 THR C 118 ILE C 119 0 SHEET 2 AA1 2 ARG D 45 ILE D 46 1 O ARG D 45 N ILE C 119 SHEET 1 AA2 2 ARG G 83 PHE G 84 0 SHEET 2 AA2 2 THR H 80 VAL H 81 1 O VAL H 81 N ARG G 83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000