data_7YP1 # _entry.id 7YP1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YP1 pdb_00007yp1 10.2210/pdb7yp1/pdb WWPDB D_1300031335 ? ? EMDB EMD-33992 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YP1 _pdbx_database_status.recvd_initial_deposition_date 2022-08-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)' _pdbx_database_related.db_id EMD-33992 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email abing0811@xmu.edu.cn _pdbx_contact_author.name_first Qingbing _pdbx_contact_author.name_last Zheng _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-7516-9965 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, L.' 1 ? 'Sun, H.' 2 ? 'Jiang, Y.' 3 ? 'Hong, J.' 4 ? 'Zheng, Q.' 5 ? 'Li, S.' 6 ? 'Chen, Y.' 7 ? 'Xia, N.' 8 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Rep Med' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2666-3791 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 101296 _citation.page_last 101296 _citation.title 'Non-overlapping epitopes on the gHgL-gp42 complex for the rational design of a triple-antibody cocktail against EBV infection.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.xcrm.2023.101296 _citation.pdbx_database_id_PubMed 37992686 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hong, J.' 1 ? primary 'Zhong, L.' 2 ? primary 'Liu, L.' 3 ? primary 'Wu, Q.' 4 ? primary 'Zhang, W.' 5 ? primary 'Chen, K.' 6 ? primary 'Wei, D.' 7 ? primary 'Sun, H.' 8 ? primary 'Zhou, X.' 9 ? primary 'Zhang, X.' 10 ? primary 'Kang, Y.F.' 11 ? primary 'Huang, Y.' 12 ? primary 'Chen, J.' 13 ? primary 'Wang, G.' 14 ? primary 'Zhou, Y.' 15 ? primary 'Chen, Y.' 16 ? primary 'Feng, Q.S.' 17 ? primary 'Yu, H.' 18 ? primary 'Li, S.' 19 ? primary 'Zeng, M.S.' 20 ? primary 'Zeng, Y.X.' 21 ? primary 'Xu, M.' 22 ? primary 'Zheng, Q.' 23 ? primary 'Chen, Y.' 24 ? primary 'Zhang, X.' 25 ? primary 'Xia, N.' 26 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'EBV gH' 22774.117 1 ? ? ? ? 2 polymer man 'EBV gL' 8623.719 1 ? ? ? ? 3 polymer man '10E4 heavy chain' 12273.763 1 ? ? ? ? 4 polymer man '10E4 light chain' 11917.251 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LSEVKLHLDIEGHASHYTIPWTELMAKVPGLSPEALWREANVTEDLASMLNRYKLIYKTSGTLGIALASAPLEKQLFYYI GTMLPNTRPHSYVFYQLRCHLSYVALSINGDKFQYTGAMTSKFLMGTYKRVTEKGDEHVLSLVFGKTKDLPDLRGPFSYP SLTSAQSGDYSLVIVTTFVHYANFHNYFVPNLKDMFSRAVT ; ;LSEVKLHLDIEGHASHYTIPWTELMAKVPGLSPEALWREANVTEDLASMLNRYKLIYKTSGTLGIALASAPLEKQLFYYI GTMLPNTRPHSYVFYQLRCHLSYVALSINGDKFQYTGAMTSKFLMGTYKRVTEKGDEHVLSLVFGKTKDLPDLRGPFSYP SLTSAQSGDYSLVIVTTFVHYANFHNYFVPNLKDMFSRAVT ; A ? 2 'polypeptide(L)' no no LALENISDIYLVSNQTCDGFSLASLNSVISRCANGLNVVSFFISILKRSSSALTGHLRELLTTLETLYGSFSVEDLFGAN LALENISDIYLVSNQTCDGFSLASLNSVISRCANGLNVVSFFISILKRSSSALTGHLRELLTTLETLYGSFSVEDLFGAN B ? 3 'polypeptide(L)' no no ;QQVKESGGRLVTPGTPLTLTCTASGFSLSTYWMSWVRQAPGKGLEYIGVIGGSGSTYYASWAKGRFTISKTSTTVDLKIT SPTTEDTATYFCARDSGAGVRFRFWGPGTLVTVSS ; ;QQVKESGGRLVTPGTPLTLTCTASGFSLSTYWMSWVRQAPGKGLEYIGVIGGSGSTYYASWAKGRFTISKTSTTVDLKIT SPTTEDTATYFCARDSGAGVRFRFWGPGTLVTVSS ; D ? 4 'polypeptide(L)' no no ;DLVMTQTPASVEAGVGGTVTINCQASENIGSRLAWYQQKPGQPPKLLIYRASTLESGVPSRFKGSGSGTEFTLTISDLEC ADAATYYCQCTYGVSITINYGNDFGGGTEVVVK ; ;DLVMTQTPASVEAGVGGTVTINCQASENIGSRLAWYQQKPGQPPKLLIYRASTLESGVPSRFKGSGSGTEFTLTISDLEC ADAATYYCQCTYGVSITINYGNDFGGGTEVVVK ; G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 SER n 1 3 GLU n 1 4 VAL n 1 5 LYS n 1 6 LEU n 1 7 HIS n 1 8 LEU n 1 9 ASP n 1 10 ILE n 1 11 GLU n 1 12 GLY n 1 13 HIS n 1 14 ALA n 1 15 SER n 1 16 HIS n 1 17 TYR n 1 18 THR n 1 19 ILE n 1 20 PRO n 1 21 TRP n 1 22 THR n 1 23 GLU n 1 24 LEU n 1 25 MET n 1 26 ALA n 1 27 LYS n 1 28 VAL n 1 29 PRO n 1 30 GLY n 1 31 LEU n 1 32 SER n 1 33 PRO n 1 34 GLU n 1 35 ALA n 1 36 LEU n 1 37 TRP n 1 38 ARG n 1 39 GLU n 1 40 ALA n 1 41 ASN n 1 42 VAL n 1 43 THR n 1 44 GLU n 1 45 ASP n 1 46 LEU n 1 47 ALA n 1 48 SER n 1 49 MET n 1 50 LEU n 1 51 ASN n 1 52 ARG n 1 53 TYR n 1 54 LYS n 1 55 LEU n 1 56 ILE n 1 57 TYR n 1 58 LYS n 1 59 THR n 1 60 SER n 1 61 GLY n 1 62 THR n 1 63 LEU n 1 64 GLY n 1 65 ILE n 1 66 ALA n 1 67 LEU n 1 68 ALA n 1 69 SER n 1 70 ALA n 1 71 PRO n 1 72 LEU n 1 73 GLU n 1 74 LYS n 1 75 GLN n 1 76 LEU n 1 77 PHE n 1 78 TYR n 1 79 TYR n 1 80 ILE n 1 81 GLY n 1 82 THR n 1 83 MET n 1 84 LEU n 1 85 PRO n 1 86 ASN n 1 87 THR n 1 88 ARG n 1 89 PRO n 1 90 HIS n 1 91 SER n 1 92 TYR n 1 93 VAL n 1 94 PHE n 1 95 TYR n 1 96 GLN n 1 97 LEU n 1 98 ARG n 1 99 CYS n 1 100 HIS n 1 101 LEU n 1 102 SER n 1 103 TYR n 1 104 VAL n 1 105 ALA n 1 106 LEU n 1 107 SER n 1 108 ILE n 1 109 ASN n 1 110 GLY n 1 111 ASP n 1 112 LYS n 1 113 PHE n 1 114 GLN n 1 115 TYR n 1 116 THR n 1 117 GLY n 1 118 ALA n 1 119 MET n 1 120 THR n 1 121 SER n 1 122 LYS n 1 123 PHE n 1 124 LEU n 1 125 MET n 1 126 GLY n 1 127 THR n 1 128 TYR n 1 129 LYS n 1 130 ARG n 1 131 VAL n 1 132 THR n 1 133 GLU n 1 134 LYS n 1 135 GLY n 1 136 ASP n 1 137 GLU n 1 138 HIS n 1 139 VAL n 1 140 LEU n 1 141 SER n 1 142 LEU n 1 143 VAL n 1 144 PHE n 1 145 GLY n 1 146 LYS n 1 147 THR n 1 148 LYS n 1 149 ASP n 1 150 LEU n 1 151 PRO n 1 152 ASP n 1 153 LEU n 1 154 ARG n 1 155 GLY n 1 156 PRO n 1 157 PHE n 1 158 SER n 1 159 TYR n 1 160 PRO n 1 161 SER n 1 162 LEU n 1 163 THR n 1 164 SER n 1 165 ALA n 1 166 GLN n 1 167 SER n 1 168 GLY n 1 169 ASP n 1 170 TYR n 1 171 SER n 1 172 LEU n 1 173 VAL n 1 174 ILE n 1 175 VAL n 1 176 THR n 1 177 THR n 1 178 PHE n 1 179 VAL n 1 180 HIS n 1 181 TYR n 1 182 ALA n 1 183 ASN n 1 184 PHE n 1 185 HIS n 1 186 ASN n 1 187 TYR n 1 188 PHE n 1 189 VAL n 1 190 PRO n 1 191 ASN n 1 192 LEU n 1 193 LYS n 1 194 ASP n 1 195 MET n 1 196 PHE n 1 197 SER n 1 198 ARG n 1 199 ALA n 1 200 VAL n 1 201 THR n 2 1 LEU n 2 2 ALA n 2 3 LEU n 2 4 GLU n 2 5 ASN n 2 6 ILE n 2 7 SER n 2 8 ASP n 2 9 ILE n 2 10 TYR n 2 11 LEU n 2 12 VAL n 2 13 SER n 2 14 ASN n 2 15 GLN n 2 16 THR n 2 17 CYS n 2 18 ASP n 2 19 GLY n 2 20 PHE n 2 21 SER n 2 22 LEU n 2 23 ALA n 2 24 SER n 2 25 LEU n 2 26 ASN n 2 27 SER n 2 28 VAL n 2 29 ILE n 2 30 SER n 2 31 ARG n 2 32 CYS n 2 33 ALA n 2 34 ASN n 2 35 GLY n 2 36 LEU n 2 37 ASN n 2 38 VAL n 2 39 VAL n 2 40 SER n 2 41 PHE n 2 42 PHE n 2 43 ILE n 2 44 SER n 2 45 ILE n 2 46 LEU n 2 47 LYS n 2 48 ARG n 2 49 SER n 2 50 SER n 2 51 SER n 2 52 ALA n 2 53 LEU n 2 54 THR n 2 55 GLY n 2 56 HIS n 2 57 LEU n 2 58 ARG n 2 59 GLU n 2 60 LEU n 2 61 LEU n 2 62 THR n 2 63 THR n 2 64 LEU n 2 65 GLU n 2 66 THR n 2 67 LEU n 2 68 TYR n 2 69 GLY n 2 70 SER n 2 71 PHE n 2 72 SER n 2 73 VAL n 2 74 GLU n 2 75 ASP n 2 76 LEU n 2 77 PHE n 2 78 GLY n 2 79 ALA n 2 80 ASN n 3 1 GLN n 3 2 GLN n 3 3 VAL n 3 4 LYS n 3 5 GLU n 3 6 SER n 3 7 GLY n 3 8 GLY n 3 9 ARG n 3 10 LEU n 3 11 VAL n 3 12 THR n 3 13 PRO n 3 14 GLY n 3 15 THR n 3 16 PRO n 3 17 LEU n 3 18 THR n 3 19 LEU n 3 20 THR n 3 21 CYS n 3 22 THR n 3 23 ALA n 3 24 SER n 3 25 GLY n 3 26 PHE n 3 27 SER n 3 28 LEU n 3 29 SER n 3 30 THR n 3 31 TYR n 3 32 TRP n 3 33 MET n 3 34 SER n 3 35 TRP n 3 36 VAL n 3 37 ARG n 3 38 GLN n 3 39 ALA n 3 40 PRO n 3 41 GLY n 3 42 LYS n 3 43 GLY n 3 44 LEU n 3 45 GLU n 3 46 TYR n 3 47 ILE n 3 48 GLY n 3 49 VAL n 3 50 ILE n 3 51 GLY n 3 52 GLY n 3 53 SER n 3 54 GLY n 3 55 SER n 3 56 THR n 3 57 TYR n 3 58 TYR n 3 59 ALA n 3 60 SER n 3 61 TRP n 3 62 ALA n 3 63 LYS n 3 64 GLY n 3 65 ARG n 3 66 PHE n 3 67 THR n 3 68 ILE n 3 69 SER n 3 70 LYS n 3 71 THR n 3 72 SER n 3 73 THR n 3 74 THR n 3 75 VAL n 3 76 ASP n 3 77 LEU n 3 78 LYS n 3 79 ILE n 3 80 THR n 3 81 SER n 3 82 PRO n 3 83 THR n 3 84 THR n 3 85 GLU n 3 86 ASP n 3 87 THR n 3 88 ALA n 3 89 THR n 3 90 TYR n 3 91 PHE n 3 92 CYS n 3 93 ALA n 3 94 ARG n 3 95 ASP n 3 96 SER n 3 97 GLY n 3 98 ALA n 3 99 GLY n 3 100 VAL n 3 101 ARG n 3 102 PHE n 3 103 ARG n 3 104 PHE n 3 105 TRP n 3 106 GLY n 3 107 PRO n 3 108 GLY n 3 109 THR n 3 110 LEU n 3 111 VAL n 3 112 THR n 3 113 VAL n 3 114 SER n 3 115 SER n 4 1 ASP n 4 2 LEU n 4 3 VAL n 4 4 MET n 4 5 THR n 4 6 GLN n 4 7 THR n 4 8 PRO n 4 9 ALA n 4 10 SER n 4 11 VAL n 4 12 GLU n 4 13 ALA n 4 14 GLY n 4 15 VAL n 4 16 GLY n 4 17 GLY n 4 18 THR n 4 19 VAL n 4 20 THR n 4 21 ILE n 4 22 ASN n 4 23 CYS n 4 24 GLN n 4 25 ALA n 4 26 SER n 4 27 GLU n 4 28 ASN n 4 29 ILE n 4 30 GLY n 4 31 SER n 4 32 ARG n 4 33 LEU n 4 34 ALA n 4 35 TRP n 4 36 TYR n 4 37 GLN n 4 38 GLN n 4 39 LYS n 4 40 PRO n 4 41 GLY n 4 42 GLN n 4 43 PRO n 4 44 PRO n 4 45 LYS n 4 46 LEU n 4 47 LEU n 4 48 ILE n 4 49 TYR n 4 50 ARG n 4 51 ALA n 4 52 SER n 4 53 THR n 4 54 LEU n 4 55 GLU n 4 56 SER n 4 57 GLY n 4 58 VAL n 4 59 PRO n 4 60 SER n 4 61 ARG n 4 62 PHE n 4 63 LYS n 4 64 GLY n 4 65 SER n 4 66 GLY n 4 67 SER n 4 68 GLY n 4 69 THR n 4 70 GLU n 4 71 PHE n 4 72 THR n 4 73 LEU n 4 74 THR n 4 75 ILE n 4 76 SER n 4 77 ASP n 4 78 LEU n 4 79 GLU n 4 80 CYS n 4 81 ALA n 4 82 ASP n 4 83 ALA n 4 84 ALA n 4 85 THR n 4 86 TYR n 4 87 TYR n 4 88 CYS n 4 89 GLN n 4 90 CYS n 4 91 THR n 4 92 TYR n 4 93 GLY n 4 94 VAL n 4 95 SER n 4 96 ILE n 4 97 THR n 4 98 ILE n 4 99 ASN n 4 100 TYR n 4 101 GLY n 4 102 ASN n 4 103 ASP n 4 104 PHE n 4 105 GLY n 4 106 GLY n 4 107 GLY n 4 108 THR n 4 109 GLU n 4 110 VAL n 4 111 VAL n 4 112 VAL n 4 113 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 201 ? ? ? ? ? ? ? ? ? 'Human gammaherpesvirus 4' 10376 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 80 ? ? ? ? ? ? ? ? ? 'Human gammaherpesvirus 4' 10376 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 115 ? ? ? ? ? ? ? ? ? 'Oryctolagus cuniculus' 9986 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample 'Biological sequence' 1 113 ? ? ? ? ? ? ? ? ? 'Oryctolagus cuniculus' 9986 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 20 20 LEU LEU A . n A 1 2 SER 2 21 21 SER SER A . n A 1 3 GLU 3 22 22 GLU GLU A . n A 1 4 VAL 4 23 23 VAL VAL A . n A 1 5 LYS 5 24 24 LYS LYS A . n A 1 6 LEU 6 25 25 LEU LEU A . n A 1 7 HIS 7 26 26 HIS HIS A . n A 1 8 LEU 8 27 27 LEU LEU A . n A 1 9 ASP 9 28 28 ASP ASP A . n A 1 10 ILE 10 29 29 ILE ILE A . n A 1 11 GLU 11 30 30 GLU GLU A . n A 1 12 GLY 12 31 31 GLY GLY A . n A 1 13 HIS 13 32 32 HIS HIS A . n A 1 14 ALA 14 33 33 ALA ALA A . n A 1 15 SER 15 34 34 SER SER A . n A 1 16 HIS 16 35 35 HIS HIS A . n A 1 17 TYR 17 36 36 TYR TYR A . n A 1 18 THR 18 37 37 THR THR A . n A 1 19 ILE 19 38 38 ILE ILE A . n A 1 20 PRO 20 39 39 PRO PRO A . n A 1 21 TRP 21 40 40 TRP TRP A . n A 1 22 THR 22 41 41 THR THR A . n A 1 23 GLU 23 42 42 GLU GLU A . n A 1 24 LEU 24 43 43 LEU LEU A . n A 1 25 MET 25 44 44 MET MET A . n A 1 26 ALA 26 45 45 ALA ALA A . n A 1 27 LYS 27 46 46 LYS LYS A . n A 1 28 VAL 28 47 47 VAL VAL A . n A 1 29 PRO 29 48 48 PRO PRO A . n A 1 30 GLY 30 49 49 GLY GLY A . n A 1 31 LEU 31 50 50 LEU LEU A . n A 1 32 SER 32 51 51 SER SER A . n A 1 33 PRO 33 52 52 PRO PRO A . n A 1 34 GLU 34 53 53 GLU GLU A . n A 1 35 ALA 35 54 54 ALA ALA A . n A 1 36 LEU 36 55 55 LEU LEU A . n A 1 37 TRP 37 56 56 TRP TRP A . n A 1 38 ARG 38 57 57 ARG ARG A . n A 1 39 GLU 39 58 58 GLU GLU A . n A 1 40 ALA 40 59 59 ALA ALA A . n A 1 41 ASN 41 60 60 ASN ASN A . n A 1 42 VAL 42 61 61 VAL VAL A . n A 1 43 THR 43 62 62 THR THR A . n A 1 44 GLU 44 63 63 GLU GLU A . n A 1 45 ASP 45 64 64 ASP ASP A . n A 1 46 LEU 46 65 65 LEU LEU A . n A 1 47 ALA 47 66 66 ALA ALA A . n A 1 48 SER 48 67 67 SER SER A . n A 1 49 MET 49 68 68 MET MET A . n A 1 50 LEU 50 69 69 LEU LEU A . n A 1 51 ASN 51 70 70 ASN ASN A . n A 1 52 ARG 52 71 71 ARG ARG A . n A 1 53 TYR 53 72 72 TYR TYR A . n A 1 54 LYS 54 73 73 LYS LYS A . n A 1 55 LEU 55 74 74 LEU LEU A . n A 1 56 ILE 56 75 75 ILE ILE A . n A 1 57 TYR 57 76 76 TYR TYR A . n A 1 58 LYS 58 77 77 LYS LYS A . n A 1 59 THR 59 78 78 THR THR A . n A 1 60 SER 60 79 79 SER SER A . n A 1 61 GLY 61 80 80 GLY GLY A . n A 1 62 THR 62 81 81 THR THR A . n A 1 63 LEU 63 82 82 LEU LEU A . n A 1 64 GLY 64 83 83 GLY GLY A . n A 1 65 ILE 65 84 84 ILE ILE A . n A 1 66 ALA 66 85 85 ALA ALA A . n A 1 67 LEU 67 86 86 LEU LEU A . n A 1 68 ALA 68 87 87 ALA ALA A . n A 1 69 SER 69 123 123 SER SER A . n A 1 70 ALA 70 124 124 ALA ALA A . n A 1 71 PRO 71 125 125 PRO PRO A . n A 1 72 LEU 72 126 126 LEU LEU A . n A 1 73 GLU 73 127 127 GLU GLU A . n A 1 74 LYS 74 128 128 LYS LYS A . n A 1 75 GLN 75 129 129 GLN GLN A . n A 1 76 LEU 76 130 130 LEU LEU A . n A 1 77 PHE 77 131 131 PHE PHE A . n A 1 78 TYR 78 132 132 TYR TYR A . n A 1 79 TYR 79 133 133 TYR TYR A . n A 1 80 ILE 80 134 134 ILE ILE A . n A 1 81 GLY 81 135 135 GLY GLY A . n A 1 82 THR 82 136 136 THR THR A . n A 1 83 MET 83 137 137 MET MET A . n A 1 84 LEU 84 138 138 LEU LEU A . n A 1 85 PRO 85 139 139 PRO PRO A . n A 1 86 ASN 86 140 140 ASN ASN A . n A 1 87 THR 87 141 141 THR THR A . n A 1 88 ARG 88 142 142 ARG ARG A . n A 1 89 PRO 89 143 143 PRO PRO A . n A 1 90 HIS 90 144 144 HIS HIS A . n A 1 91 SER 91 145 145 SER SER A . n A 1 92 TYR 92 146 146 TYR TYR A . n A 1 93 VAL 93 147 147 VAL VAL A . n A 1 94 PHE 94 148 148 PHE PHE A . n A 1 95 TYR 95 149 149 TYR TYR A . n A 1 96 GLN 96 150 150 GLN GLN A . n A 1 97 LEU 97 151 151 LEU LEU A . n A 1 98 ARG 98 152 152 ARG ARG A . n A 1 99 CYS 99 153 153 CYS CYS A . n A 1 100 HIS 100 154 154 HIS HIS A . n A 1 101 LEU 101 155 155 LEU LEU A . n A 1 102 SER 102 156 156 SER SER A . n A 1 103 TYR 103 157 157 TYR TYR A . n A 1 104 VAL 104 158 158 VAL VAL A . n A 1 105 ALA 105 159 159 ALA ALA A . n A 1 106 LEU 106 160 ? ? ? A . n A 1 107 SER 107 161 ? ? ? A . n A 1 108 ILE 108 162 ? ? ? A . n A 1 109 ASN 109 163 ? ? ? A . n A 1 110 GLY 110 164 ? ? ? A . n A 1 111 ASP 111 165 ? ? ? A . n A 1 112 LYS 112 166 ? ? ? A . n A 1 113 PHE 113 167 ? ? ? A . n A 1 114 GLN 114 168 ? ? ? A . n A 1 115 TYR 115 169 169 TYR TYR A . n A 1 116 THR 116 170 170 THR THR A . n A 1 117 GLY 117 171 171 GLY GLY A . n A 1 118 ALA 118 172 172 ALA ALA A . n A 1 119 MET 119 173 173 MET MET A . n A 1 120 THR 120 174 174 THR THR A . n A 1 121 SER 121 175 175 SER SER A . n A 1 122 LYS 122 176 176 LYS LYS A . n A 1 123 PHE 123 177 177 PHE PHE A . n A 1 124 LEU 124 178 178 LEU LEU A . n A 1 125 MET 125 179 179 MET MET A . n A 1 126 GLY 126 180 180 GLY GLY A . n A 1 127 THR 127 181 181 THR THR A . n A 1 128 TYR 128 182 182 TYR TYR A . n A 1 129 LYS 129 183 183 LYS LYS A . n A 1 130 ARG 130 184 184 ARG ARG A . n A 1 131 VAL 131 185 ? ? ? A . n A 1 132 THR 132 186 ? ? ? A . n A 1 133 GLU 133 187 ? ? ? A . n A 1 134 LYS 134 188 ? ? ? A . n A 1 135 GLY 135 189 ? ? ? A . n A 1 136 ASP 136 190 ? ? ? A . n A 1 137 GLU 137 191 ? ? ? A . n A 1 138 HIS 138 192 192 HIS HIS A . n A 1 139 VAL 139 193 193 VAL VAL A . n A 1 140 LEU 140 194 194 LEU LEU A . n A 1 141 SER 141 195 195 SER SER A . n A 1 142 LEU 142 196 196 LEU LEU A . n A 1 143 VAL 143 197 197 VAL VAL A . n A 1 144 PHE 144 198 198 PHE PHE A . n A 1 145 GLY 145 199 199 GLY GLY A . n A 1 146 LYS 146 200 200 LYS LYS A . n A 1 147 THR 147 201 201 THR THR A . n A 1 148 LYS 148 202 202 LYS LYS A . n A 1 149 ASP 149 203 203 ASP ASP A . n A 1 150 LEU 150 204 204 LEU LEU A . n A 1 151 PRO 151 205 205 PRO PRO A . n A 1 152 ASP 152 206 206 ASP ASP A . n A 1 153 LEU 153 207 207 LEU LEU A . n A 1 154 ARG 154 208 208 ARG ARG A . n A 1 155 GLY 155 209 209 GLY GLY A . n A 1 156 PRO 156 210 210 PRO PRO A . n A 1 157 PHE 157 211 211 PHE PHE A . n A 1 158 SER 158 212 212 SER SER A . n A 1 159 TYR 159 213 213 TYR TYR A . n A 1 160 PRO 160 214 214 PRO PRO A . n A 1 161 SER 161 215 215 SER SER A . n A 1 162 LEU 162 216 216 LEU LEU A . n A 1 163 THR 163 217 217 THR THR A . n A 1 164 SER 164 218 218 SER SER A . n A 1 165 ALA 165 219 219 ALA ALA A . n A 1 166 GLN 166 220 220 GLN GLN A . n A 1 167 SER 167 221 221 SER SER A . n A 1 168 GLY 168 222 222 GLY GLY A . n A 1 169 ASP 169 223 223 ASP ASP A . n A 1 170 TYR 170 224 224 TYR TYR A . n A 1 171 SER 171 225 225 SER SER A . n A 1 172 LEU 172 226 226 LEU LEU A . n A 1 173 VAL 173 227 227 VAL VAL A . n A 1 174 ILE 174 228 228 ILE ILE A . n A 1 175 VAL 175 229 229 VAL VAL A . n A 1 176 THR 176 230 230 THR THR A . n A 1 177 THR 177 231 231 THR THR A . n A 1 178 PHE 178 232 232 PHE PHE A . n A 1 179 VAL 179 233 233 VAL VAL A . n A 1 180 HIS 180 234 234 HIS HIS A . n A 1 181 TYR 181 235 235 TYR TYR A . n A 1 182 ALA 182 236 236 ALA ALA A . n A 1 183 ASN 183 237 237 ASN ASN A . n A 1 184 PHE 184 238 238 PHE PHE A . n A 1 185 HIS 185 239 239 HIS HIS A . n A 1 186 ASN 186 240 240 ASN ASN A . n A 1 187 TYR 187 241 241 TYR TYR A . n A 1 188 PHE 188 242 242 PHE PHE A . n A 1 189 VAL 189 243 243 VAL VAL A . n A 1 190 PRO 190 244 244 PRO PRO A . n A 1 191 ASN 191 245 245 ASN ASN A . n A 1 192 LEU 192 246 246 LEU LEU A . n A 1 193 LYS 193 247 247 LYS LYS A . n A 1 194 ASP 194 248 248 ASP ASP A . n A 1 195 MET 195 249 249 MET MET A . n A 1 196 PHE 196 250 250 PHE PHE A . n A 1 197 SER 197 251 251 SER SER A . n A 1 198 ARG 198 252 252 ARG ARG A . n A 1 199 ALA 199 253 253 ALA ALA A . n A 1 200 VAL 200 254 254 VAL VAL A . n A 1 201 THR 201 255 255 THR THR A . n B 2 1 LEU 1 40 40 LEU LEU B . n B 2 2 ALA 2 41 41 ALA ALA B . n B 2 3 LEU 3 42 42 LEU LEU B . n B 2 4 GLU 4 43 43 GLU GLU B . n B 2 5 ASN 5 44 44 ASN ASN B . n B 2 6 ILE 6 45 45 ILE ILE B . n B 2 7 SER 7 46 46 SER SER B . n B 2 8 ASP 8 47 47 ASP ASP B . n B 2 9 ILE 9 48 48 ILE ILE B . n B 2 10 TYR 10 49 49 TYR TYR B . n B 2 11 LEU 11 50 50 LEU LEU B . n B 2 12 VAL 12 51 51 VAL VAL B . n B 2 13 SER 13 52 52 SER SER B . n B 2 14 ASN 14 53 53 ASN ASN B . n B 2 15 GLN 15 54 54 GLN GLN B . n B 2 16 THR 16 55 55 THR THR B . n B 2 17 CYS 17 56 56 CYS CYS B . n B 2 18 ASP 18 57 57 ASP ASP B . n B 2 19 GLY 19 58 58 GLY GLY B . n B 2 20 PHE 20 59 59 PHE PHE B . n B 2 21 SER 21 60 60 SER SER B . n B 2 22 LEU 22 61 61 LEU LEU B . n B 2 23 ALA 23 62 62 ALA ALA B . n B 2 24 SER 24 63 63 SER SER B . n B 2 25 LEU 25 64 64 LEU LEU B . n B 2 26 ASN 26 65 65 ASN ASN B . n B 2 27 SER 27 66 66 SER SER B . n B 2 28 VAL 28 75 75 VAL VAL B . n B 2 29 ILE 29 76 76 ILE ILE B . n B 2 30 SER 30 77 77 SER SER B . n B 2 31 ARG 31 78 78 ARG ARG B . n B 2 32 CYS 32 79 79 CYS CYS B . n B 2 33 ALA 33 80 80 ALA ALA B . n B 2 34 ASN 34 81 81 ASN ASN B . n B 2 35 GLY 35 82 82 GLY GLY B . n B 2 36 LEU 36 83 83 LEU LEU B . n B 2 37 ASN 37 84 84 ASN ASN B . n B 2 38 VAL 38 85 85 VAL VAL B . n B 2 39 VAL 39 86 86 VAL VAL B . n B 2 40 SER 40 87 87 SER SER B . n B 2 41 PHE 41 88 88 PHE PHE B . n B 2 42 PHE 42 89 89 PHE PHE B . n B 2 43 ILE 43 90 90 ILE ILE B . n B 2 44 SER 44 91 91 SER SER B . n B 2 45 ILE 45 92 92 ILE ILE B . n B 2 46 LEU 46 93 93 LEU LEU B . n B 2 47 LYS 47 94 94 LYS LYS B . n B 2 48 ARG 48 95 95 ARG ARG B . n B 2 49 SER 49 96 96 SER SER B . n B 2 50 SER 50 97 97 SER SER B . n B 2 51 SER 51 98 98 SER SER B . n B 2 52 ALA 52 99 99 ALA ALA B . n B 2 53 LEU 53 100 100 LEU LEU B . n B 2 54 THR 54 101 101 THR THR B . n B 2 55 GLY 55 102 102 GLY GLY B . n B 2 56 HIS 56 103 103 HIS HIS B . n B 2 57 LEU 57 104 104 LEU LEU B . n B 2 58 ARG 58 105 105 ARG ARG B . n B 2 59 GLU 59 106 106 GLU GLU B . n B 2 60 LEU 60 107 107 LEU LEU B . n B 2 61 LEU 61 108 108 LEU LEU B . n B 2 62 THR 62 109 109 THR THR B . n B 2 63 THR 63 110 110 THR THR B . n B 2 64 LEU 64 111 111 LEU LEU B . n B 2 65 GLU 65 112 112 GLU GLU B . n B 2 66 THR 66 113 113 THR THR B . n B 2 67 LEU 67 114 114 LEU LEU B . n B 2 68 TYR 68 115 115 TYR TYR B . n B 2 69 GLY 69 116 116 GLY GLY B . n B 2 70 SER 70 117 117 SER SER B . n B 2 71 PHE 71 118 118 PHE PHE B . n B 2 72 SER 72 119 119 SER SER B . n B 2 73 VAL 73 120 120 VAL VAL B . n B 2 74 GLU 74 121 121 GLU GLU B . n B 2 75 ASP 75 122 122 ASP ASP B . n B 2 76 LEU 76 123 123 LEU LEU B . n B 2 77 PHE 77 124 124 PHE PHE B . n B 2 78 GLY 78 125 ? ? ? B . n B 2 79 ALA 79 126 ? ? ? B . n B 2 80 ASN 80 127 ? ? ? B . n C 3 1 GLN 1 2 2 GLN GLN D . n C 3 2 GLN 2 3 3 GLN GLN D . n C 3 3 VAL 3 4 4 VAL VAL D . n C 3 4 LYS 4 5 5 LYS LYS D . n C 3 5 GLU 5 6 6 GLU GLU D . n C 3 6 SER 6 7 7 SER SER D . n C 3 7 GLY 7 8 8 GLY GLY D . n C 3 8 GLY 8 9 9 GLY GLY D . n C 3 9 ARG 9 10 10 ARG ARG D . n C 3 10 LEU 10 11 11 LEU LEU D . n C 3 11 VAL 11 12 12 VAL VAL D . n C 3 12 THR 12 13 13 THR THR D . n C 3 13 PRO 13 14 14 PRO PRO D . n C 3 14 GLY 14 15 15 GLY GLY D . n C 3 15 THR 15 16 16 THR THR D . n C 3 16 PRO 16 17 17 PRO PRO D . n C 3 17 LEU 17 18 18 LEU LEU D . n C 3 18 THR 18 19 19 THR THR D . n C 3 19 LEU 19 20 20 LEU LEU D . n C 3 20 THR 20 21 21 THR THR D . n C 3 21 CYS 21 22 22 CYS CYS D . n C 3 22 THR 22 23 23 THR THR D . n C 3 23 ALA 23 24 24 ALA ALA D . n C 3 24 SER 24 25 25 SER SER D . n C 3 25 GLY 25 26 26 GLY GLY D . n C 3 26 PHE 26 27 27 PHE PHE D . n C 3 27 SER 27 28 28 SER SER D . n C 3 28 LEU 28 29 29 LEU LEU D . n C 3 29 SER 29 30 30 SER SER D . n C 3 30 THR 30 31 31 THR THR D . n C 3 31 TYR 31 32 32 TYR TYR D . n C 3 32 TRP 32 33 33 TRP TRP D . n C 3 33 MET 33 34 34 MET MET D . n C 3 34 SER 34 35 35 SER SER D . n C 3 35 TRP 35 36 36 TRP TRP D . n C 3 36 VAL 36 37 37 VAL VAL D . n C 3 37 ARG 37 38 38 ARG ARG D . n C 3 38 GLN 38 39 39 GLN GLN D . n C 3 39 ALA 39 40 40 ALA ALA D . n C 3 40 PRO 40 41 41 PRO PRO D . n C 3 41 GLY 41 42 42 GLY GLY D . n C 3 42 LYS 42 43 43 LYS LYS D . n C 3 43 GLY 43 44 44 GLY GLY D . n C 3 44 LEU 44 45 45 LEU LEU D . n C 3 45 GLU 45 46 46 GLU GLU D . n C 3 46 TYR 46 47 47 TYR TYR D . n C 3 47 ILE 47 48 48 ILE ILE D . n C 3 48 GLY 48 49 49 GLY GLY D . n C 3 49 VAL 49 50 50 VAL VAL D . n C 3 50 ILE 50 51 51 ILE ILE D . n C 3 51 GLY 51 52 52 GLY GLY D . n C 3 52 GLY 52 53 53 GLY GLY D . n C 3 53 SER 53 54 54 SER SER D . n C 3 54 GLY 54 55 55 GLY GLY D . n C 3 55 SER 55 56 56 SER SER D . n C 3 56 THR 56 57 57 THR THR D . n C 3 57 TYR 57 58 58 TYR TYR D . n C 3 58 TYR 58 59 59 TYR TYR D . n C 3 59 ALA 59 60 60 ALA ALA D . n C 3 60 SER 60 61 61 SER SER D . n C 3 61 TRP 61 62 62 TRP TRP D . n C 3 62 ALA 62 63 63 ALA ALA D . n C 3 63 LYS 63 64 64 LYS LYS D . n C 3 64 GLY 64 65 65 GLY GLY D . n C 3 65 ARG 65 66 66 ARG ARG D . n C 3 66 PHE 66 67 67 PHE PHE D . n C 3 67 THR 67 68 68 THR THR D . n C 3 68 ILE 68 69 69 ILE ILE D . n C 3 69 SER 69 70 70 SER SER D . n C 3 70 LYS 70 71 71 LYS LYS D . n C 3 71 THR 71 72 72 THR THR D . n C 3 72 SER 72 73 73 SER SER D . n C 3 73 THR 73 74 74 THR THR D . n C 3 74 THR 74 75 75 THR THR D . n C 3 75 VAL 75 76 76 VAL VAL D . n C 3 76 ASP 76 77 77 ASP ASP D . n C 3 77 LEU 77 78 78 LEU LEU D . n C 3 78 LYS 78 79 79 LYS LYS D . n C 3 79 ILE 79 80 80 ILE ILE D . n C 3 80 THR 80 81 81 THR THR D . n C 3 81 SER 81 82 82 SER SER D . n C 3 82 PRO 82 83 83 PRO PRO D . n C 3 83 THR 83 84 84 THR THR D . n C 3 84 THR 84 85 85 THR THR D . n C 3 85 GLU 85 86 86 GLU GLU D . n C 3 86 ASP 86 87 87 ASP ASP D . n C 3 87 THR 87 88 88 THR THR D . n C 3 88 ALA 88 89 89 ALA ALA D . n C 3 89 THR 89 90 90 THR THR D . n C 3 90 TYR 90 91 91 TYR TYR D . n C 3 91 PHE 91 92 92 PHE PHE D . n C 3 92 CYS 92 93 93 CYS CYS D . n C 3 93 ALA 93 94 94 ALA ALA D . n C 3 94 ARG 94 95 95 ARG ARG D . n C 3 95 ASP 95 96 96 ASP ASP D . n C 3 96 SER 96 97 97 SER SER D . n C 3 97 GLY 97 98 98 GLY GLY D . n C 3 98 ALA 98 99 99 ALA ALA D . n C 3 99 GLY 99 100 100 GLY GLY D . n C 3 100 VAL 100 101 101 VAL VAL D . n C 3 101 ARG 101 102 102 ARG ARG D . n C 3 102 PHE 102 103 103 PHE PHE D . n C 3 103 ARG 103 104 104 ARG ARG D . n C 3 104 PHE 104 105 105 PHE PHE D . n C 3 105 TRP 105 106 106 TRP TRP D . n C 3 106 GLY 106 107 107 GLY GLY D . n C 3 107 PRO 107 108 108 PRO PRO D . n C 3 108 GLY 108 109 109 GLY GLY D . n C 3 109 THR 109 110 110 THR THR D . n C 3 110 LEU 110 111 111 LEU LEU D . n C 3 111 VAL 111 112 112 VAL VAL D . n C 3 112 THR 112 113 113 THR THR D . n C 3 113 VAL 113 114 114 VAL VAL D . n C 3 114 SER 114 115 115 SER SER D . n C 3 115 SER 115 116 116 SER SER D . n D 4 1 ASP 1 1 1 ASP ASP G . n D 4 2 LEU 2 2 2 LEU LEU G . n D 4 3 VAL 3 3 3 VAL VAL G . n D 4 4 MET 4 4 4 MET MET G . n D 4 5 THR 5 5 5 THR THR G . n D 4 6 GLN 6 6 6 GLN GLN G . n D 4 7 THR 7 7 7 THR THR G . n D 4 8 PRO 8 8 8 PRO PRO G . n D 4 9 ALA 9 9 9 ALA ALA G . n D 4 10 SER 10 10 10 SER SER G . n D 4 11 VAL 11 11 11 VAL VAL G . n D 4 12 GLU 12 12 12 GLU GLU G . n D 4 13 ALA 13 13 13 ALA ALA G . n D 4 14 GLY 14 14 14 GLY GLY G . n D 4 15 VAL 15 15 15 VAL VAL G . n D 4 16 GLY 16 16 16 GLY GLY G . n D 4 17 GLY 17 17 17 GLY GLY G . n D 4 18 THR 18 18 18 THR THR G . n D 4 19 VAL 19 19 19 VAL VAL G . n D 4 20 THR 20 20 20 THR THR G . n D 4 21 ILE 21 21 21 ILE ILE G . n D 4 22 ASN 22 22 22 ASN ASN G . n D 4 23 CYS 23 23 23 CYS CYS G . n D 4 24 GLN 24 24 24 GLN GLN G . n D 4 25 ALA 25 25 25 ALA ALA G . n D 4 26 SER 26 26 26 SER SER G . n D 4 27 GLU 27 27 27 GLU GLU G . n D 4 28 ASN 28 28 28 ASN ASN G . n D 4 29 ILE 29 29 29 ILE ILE G . n D 4 30 GLY 30 30 30 GLY GLY G . n D 4 31 SER 31 31 31 SER SER G . n D 4 32 ARG 32 32 32 ARG ARG G . n D 4 33 LEU 33 33 33 LEU LEU G . n D 4 34 ALA 34 34 34 ALA ALA G . n D 4 35 TRP 35 35 35 TRP TRP G . n D 4 36 TYR 36 36 36 TYR TYR G . n D 4 37 GLN 37 37 37 GLN GLN G . n D 4 38 GLN 38 38 38 GLN GLN G . n D 4 39 LYS 39 39 39 LYS LYS G . n D 4 40 PRO 40 40 40 PRO PRO G . n D 4 41 GLY 41 41 41 GLY GLY G . n D 4 42 GLN 42 42 42 GLN GLN G . n D 4 43 PRO 43 43 43 PRO PRO G . n D 4 44 PRO 44 44 44 PRO PRO G . n D 4 45 LYS 45 45 45 LYS LYS G . n D 4 46 LEU 46 46 46 LEU LEU G . n D 4 47 LEU 47 47 47 LEU LEU G . n D 4 48 ILE 48 48 48 ILE ILE G . n D 4 49 TYR 49 49 49 TYR TYR G . n D 4 50 ARG 50 50 50 ARG ARG G . n D 4 51 ALA 51 51 51 ALA ALA G . n D 4 52 SER 52 52 52 SER SER G . n D 4 53 THR 53 53 53 THR THR G . n D 4 54 LEU 54 54 54 LEU LEU G . n D 4 55 GLU 55 55 55 GLU GLU G . n D 4 56 SER 56 56 56 SER SER G . n D 4 57 GLY 57 57 57 GLY GLY G . n D 4 58 VAL 58 58 58 VAL VAL G . n D 4 59 PRO 59 59 59 PRO PRO G . n D 4 60 SER 60 60 60 SER SER G . n D 4 61 ARG 61 61 61 ARG ARG G . n D 4 62 PHE 62 62 62 PHE PHE G . n D 4 63 LYS 63 63 63 LYS LYS G . n D 4 64 GLY 64 64 64 GLY GLY G . n D 4 65 SER 65 65 65 SER SER G . n D 4 66 GLY 66 66 66 GLY GLY G . n D 4 67 SER 67 67 67 SER SER G . n D 4 68 GLY 68 68 68 GLY GLY G . n D 4 69 THR 69 69 69 THR THR G . n D 4 70 GLU 70 70 70 GLU GLU G . n D 4 71 PHE 71 71 71 PHE PHE G . n D 4 72 THR 72 72 72 THR THR G . n D 4 73 LEU 73 73 73 LEU LEU G . n D 4 74 THR 74 74 74 THR THR G . n D 4 75 ILE 75 75 75 ILE ILE G . n D 4 76 SER 76 76 76 SER SER G . n D 4 77 ASP 77 77 77 ASP ASP G . n D 4 78 LEU 78 78 78 LEU LEU G . n D 4 79 GLU 79 79 79 GLU GLU G . n D 4 80 CYS 80 80 80 CYS CYS G . n D 4 81 ALA 81 81 81 ALA ALA G . n D 4 82 ASP 82 82 82 ASP ASP G . n D 4 83 ALA 83 83 83 ALA ALA G . n D 4 84 ALA 84 84 84 ALA ALA G . n D 4 85 THR 85 85 85 THR THR G . n D 4 86 TYR 86 86 86 TYR TYR G . n D 4 87 TYR 87 87 87 TYR TYR G . n D 4 88 CYS 88 88 88 CYS CYS G . n D 4 89 GLN 89 89 89 GLN GLN G . n D 4 90 CYS 90 90 90 CYS CYS G . n D 4 91 THR 91 91 91 THR THR G . n D 4 92 TYR 92 92 92 TYR TYR G . n D 4 93 GLY 93 93 93 GLY GLY G . n D 4 94 VAL 94 94 94 VAL VAL G . n D 4 95 SER 95 95 95 SER SER G . n D 4 96 ILE 96 95 95 ILE ILE G A n D 4 97 THR 97 95 95 THR THR G Z n D 4 98 ILE 98 96 96 ILE ILE G . n D 4 99 ASN 99 97 97 ASN ASN G . n D 4 100 TYR 100 98 98 TYR TYR G . n D 4 101 GLY 101 99 99 GLY GLY G . n D 4 102 ASN 102 100 100 ASN ASN G . n D 4 103 ASP 103 101 101 ASP ASP G . n D 4 104 PHE 104 102 102 PHE PHE G . n D 4 105 GLY 105 103 103 GLY GLY G . n D 4 106 GLY 106 104 104 GLY GLY G . n D 4 107 GLY 107 105 105 GLY GLY G . n D 4 108 THR 108 106 106 THR THR G . n D 4 109 GLU 109 107 107 GLU GLU G . n D 4 110 VAL 110 108 108 VAL VAL G . n D 4 111 VAL 111 109 109 VAL VAL G . n D 4 112 VAL 112 110 110 VAL VAL G . n D 4 113 LYS 113 111 111 LYS LYS G . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.14_3259: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7YP1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7YP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YP1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7YP1 _struct.title 'Cryo-EM structure of EBV gHgL-gp42 in complex with mAb 10E4 (localized refinement)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YP1 _struct_keywords.text 'EBV, Cryo-EM, Glycoprotein, gHgL-gp42 complex, Antibody, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7YP1 7YP1 ? 1 ? 1 2 PDB 7YP1 7YP1 ? 2 ? 1 3 PDB 7YP1 7YP1 ? 3 ? 1 4 PDB 7YP1 7YP1 ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7YP1 A 1 ? 201 ? 7YP1 20 ? 255 ? 20 255 2 2 7YP1 B 1 ? 80 ? 7YP1 40 ? 127 ? 40 127 3 3 7YP1 D 1 ? 115 ? 7YP1 2 ? 116 ? 2 116 4 4 7YP1 G 1 ? 113 ? 7YP1 1 ? 111 ? 1 111 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 23 ? VAL A 28 ? GLU A 42 VAL A 47 1 ? 6 HELX_P HELX_P2 AA2 SER A 32 ? ASN A 41 ? SER A 51 ASN A 60 1 ? 10 HELX_P HELX_P3 AA3 SER A 48 ? LYS A 54 ? SER A 67 LYS A 73 1 ? 7 HELX_P HELX_P4 AA4 ALA A 70 ? PHE A 77 ? ALA A 124 PHE A 131 1 ? 8 HELX_P HELX_P5 AA5 SER A 158 ? SER A 161 ? SER A 212 SER A 215 5 ? 4 HELX_P HELX_P6 AA6 ALA B 2 ? ILE B 6 ? ALA B 41 ILE B 45 5 ? 5 HELX_P HELX_P7 AA7 GLY B 35 ? LYS B 47 ? GLY B 82 LYS B 94 1 ? 13 HELX_P HELX_P8 AA8 HIS B 56 ? SER B 70 ? HIS B 103 SER B 117 1 ? 15 HELX_P HELX_P9 AA9 SER B 72 ? LEU B 76 ? SER B 119 LEU B 123 5 ? 5 HELX_P HELX_P10 AB1 THR C 83 ? THR C 87 ? THR D 84 THR D 88 5 ? 5 HELX_P HELX_P11 AB2 GLU D 79 ? ALA D 83 ? GLU G 79 ALA G 83 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? C CYS 21 SG ? ? ? 1_555 C CYS 92 SG ? ? D CYS 22 D CYS 93 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? D CYS 23 SG ? ? ? 1_555 D CYS 88 SG ? ? G CYS 23 G CYS 88 1_555 ? ? ? ? ? ? ? 2.042 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 29 A . ? PRO 48 A GLY 30 A ? GLY 49 A 1 -2.41 2 ARG 88 A . ? ARG 142 A PRO 89 A ? PRO 143 A 1 -1.38 3 THR 7 D . ? THR 7 G PRO 8 D ? PRO 8 G 1 -1.04 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 4 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 5 ? AA8 ? 4 ? AA9 ? 2 ? AB1 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA7 4 5 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS A 13 ? SER A 15 ? HIS A 32 SER A 34 AA1 2 LYS A 5 ? ILE A 10 ? LYS A 24 ILE A 29 AA1 3 ASP B 8 ? VAL B 12 ? ASP B 47 VAL B 51 AA1 4 LEU B 25 ? ASN B 26 ? LEU B 64 ASN B 65 AA2 1 GLY A 81 ? LEU A 84 ? GLY A 135 LEU A 138 AA2 2 LEU A 97 ? CYS A 99 ? LEU A 151 CYS A 153 AA3 1 SER A 102 ? VAL A 104 ? SER A 156 VAL A 158 AA3 2 GLY A 117 ? MET A 119 ? GLY A 171 MET A 173 AA4 1 PHE A 123 ? TYR A 128 ? PHE A 177 TYR A 182 AA4 2 LEU A 140 ? LYS A 146 ? LEU A 194 LYS A 200 AA4 3 TYR A 170 ? VAL A 175 ? TYR A 224 VAL A 229 AA4 4 THR A 163 ? SER A 167 ? THR A 217 SER A 221 AA5 1 LEU B 22 ? ALA B 23 ? LEU B 61 ALA B 62 AA5 2 ALA B 33 ? ASN B 34 ? ALA B 80 ASN B 81 AA6 1 VAL C 3 ? SER C 6 ? VAL D 4 SER D 7 AA6 2 LEU C 17 ? ALA C 23 ? LEU D 18 ALA D 24 AA6 3 THR C 74 ? ILE C 79 ? THR D 75 ILE D 80 AA6 4 PHE C 66 ? LYS C 70 ? PHE D 67 LYS D 71 AA7 1 THR C 56 ? TYR C 58 ? THR D 57 TYR D 59 AA7 2 GLU C 45 ? ILE C 50 ? GLU D 46 ILE D 51 AA7 3 MET C 33 ? GLN C 38 ? MET D 34 GLN D 39 AA7 4 THR C 89 ? ARG C 94 ? THR D 90 ARG D 95 AA7 5 PHE C 104 ? TRP C 105 ? PHE D 105 TRP D 106 AA8 1 MET D 4 ? THR D 7 ? MET G 4 THR G 7 AA8 2 ILE D 21 ? ALA D 25 ? ILE G 21 ALA G 25 AA8 3 GLU D 70 ? LEU D 73 ? GLU G 70 LEU G 73 AA8 4 GLY D 64 ? SER D 65 ? GLY G 64 SER G 65 AA9 1 SER D 10 ? ALA D 13 ? SER G 10 ALA G 13 AA9 2 GLU D 109 ? VAL D 112 ? GLU G 107 VAL G 110 AB1 1 THR D 53 ? LEU D 54 ? THR G 53 LEU G 54 AB1 2 LYS D 45 ? TYR D 49 ? LYS G 45 TYR G 49 AB1 3 ALA D 34 ? GLN D 38 ? ALA G 34 GLN G 38 AB1 4 THR D 85 ? GLN D 89 ? THR G 85 GLN G 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O SER A 15 ? O SER A 34 N LEU A 8 ? N LEU A 27 AA1 2 3 N HIS A 7 ? N HIS A 26 O ILE B 9 ? O ILE B 48 AA1 3 4 N ASP B 8 ? N ASP B 47 O ASN B 26 ? O ASN B 65 AA2 1 2 N GLY A 81 ? N GLY A 135 O CYS A 99 ? O CYS A 153 AA3 1 2 N VAL A 104 ? N VAL A 158 O GLY A 117 ? O GLY A 171 AA4 1 2 N LEU A 124 ? N LEU A 178 O PHE A 144 ? O PHE A 198 AA4 2 3 N VAL A 143 ? N VAL A 197 O VAL A 173 ? O VAL A 227 AA4 3 4 O LEU A 172 ? O LEU A 226 N SER A 164 ? N SER A 218 AA5 1 2 N ALA B 23 ? N ALA B 62 O ALA B 33 ? O ALA B 80 AA6 1 2 N SER C 6 ? N SER D 7 O THR C 20 ? O THR D 21 AA6 2 3 N LEU C 19 ? N LEU D 20 O LEU C 77 ? O LEU D 78 AA6 3 4 O ASP C 76 ? O ASP D 77 N SER C 69 ? N SER D 70 AA7 1 2 O TYR C 57 ? O TYR D 58 N VAL C 49 ? N VAL D 50 AA7 2 3 O GLU C 45 ? O GLU D 46 N ARG C 37 ? N ARG D 38 AA7 3 4 N SER C 34 ? N SER D 35 O ALA C 93 ? O ALA D 94 AA7 4 5 N ARG C 94 ? N ARG D 95 O PHE C 104 ? O PHE D 105 AA8 1 2 N THR D 7 ? N THR G 7 O ASN D 22 ? O ASN G 22 AA8 2 3 N CYS D 23 ? N CYS G 23 O PHE D 71 ? O PHE G 71 AA8 3 4 O THR D 72 ? O THR G 72 N SER D 65 ? N SER G 65 AA9 1 2 N VAL D 11 ? N VAL G 11 O GLU D 109 ? O GLU G 107 AB1 1 2 O THR D 53 ? O THR G 53 N TYR D 49 ? N TYR G 49 AB1 2 3 O LEU D 47 ? O LEU G 47 N TRP D 35 ? N TRP G 35 AB1 3 4 N ALA D 34 ? N ALA G 34 O GLN D 89 ? O GLN G 89 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 G _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 23 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 G _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 23 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 G _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 23 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 122.63 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 8.43 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 21 ? ? -96.55 -66.60 2 1 SER A 51 ? ? -156.41 84.63 3 1 LYS A 73 ? ? -98.02 34.52 4 1 PRO A 143 ? ? -95.30 38.09 5 1 TYR A 235 ? ? -88.57 30.74 6 1 SER B 96 ? ? -96.52 57.15 7 1 ALA D 89 ? ? -161.64 -166.91 8 1 ALA G 51 ? ? 67.96 -6.05 9 1 ALA G 81 ? ? -92.76 52.13 10 1 ILE G 96 ? ? -95.85 -68.27 11 1 ASN G 100 ? ? -144.03 37.77 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A ALA 87 ? ? N A SER 123 ? ? 21.97 2 1 C B SER 66 ? ? N B VAL 75 ? ? 6.27 # _em_3d_fitting.entry_id 7YP1 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7YP1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 402382 _em_3d_reconstruction.resolution 3.54 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.details _em_entity_assembly.name _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.entity_id_list _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details 1 0 ? 'gHgL-gp42 in complex with mAb 10E4' RECOMBINANT COMPLEX '1, 2, 3, 4' ? ? 2 1 ? gH,gL RECOMBINANT COMPLEX 1,2 ? ? 3 1 ? 10E4 RECOMBINANT COMPLEX 3,4 ? ? # _em_imaging.id 1 _em_imaging.entry_id 7YP1 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI F30' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7YP1 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7YP1 _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 160 ? A LEU 106 2 1 Y 1 A SER 161 ? A SER 107 3 1 Y 1 A ILE 162 ? A ILE 108 4 1 Y 1 A ASN 163 ? A ASN 109 5 1 Y 1 A GLY 164 ? A GLY 110 6 1 Y 1 A ASP 165 ? A ASP 111 7 1 Y 1 A LYS 166 ? A LYS 112 8 1 Y 1 A PHE 167 ? A PHE 113 9 1 Y 1 A GLN 168 ? A GLN 114 10 1 Y 1 A VAL 185 ? A VAL 131 11 1 Y 1 A THR 186 ? A THR 132 12 1 Y 1 A GLU 187 ? A GLU 133 13 1 Y 1 A LYS 188 ? A LYS 134 14 1 Y 1 A GLY 189 ? A GLY 135 15 1 Y 1 A ASP 190 ? A ASP 136 16 1 Y 1 A GLU 191 ? A GLU 137 17 1 Y 1 B GLY 125 ? B GLY 78 18 1 Y 1 B ALA 126 ? B ALA 79 19 1 Y 1 B ASN 127 ? B ASN 80 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # loop_ _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue 1 2 ? ? 10376 ? ? 'Human gammaherpesvirus 4' ? ? 2 3 ? ? 9986 ? ? 'Oryctolagus cuniculus' ? ? # loop_ _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain 1 2 ? 9606 'Homo sapiens' ? ? 2 3 ? 9606 'Homo sapiens' ? ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60.0 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 7YP1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_