HEADER TRANSFERASE 02-AUG-22 7YP5 TITLE CRYSTAL STRUCTURE OF ELAIOPHYLIN GLYCOSYLTRANSFERASE IN COMPLEX WITH TITLE 2 TDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. SCSIO 01934; SOURCE 3 ORGANISM_TAXID: 911111; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GLYCOSYLTRANSFERASE, ELAIOPHYLIN, GT1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.XU,Q.LIU,Q.GAN,J.LIU REVDAT 2 29-NOV-23 7YP5 1 REMARK REVDAT 1 02-NOV-22 7YP5 0 JRNL AUTH T.XU,Q.GAN,Q.LIU,R.CHEN,X.ZHEN,C.ZHANG,J.LIU JRNL TITL SUBSTRATE-INDUCED DIMERIZATION OF ELAIOPHYLIN JRNL TITL 2 GLYCOSYLTRANSFERASE REVEALS A NOVEL SELF-ACTIVATING FORM OF JRNL TITL 3 GLYCOSYLTRANSFERASE FOR SYMMETRIC GLYCOSYLATION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 78 1235 2022 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 36189743 JRNL DOI 10.1107/S2059798322008658 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 48260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3610 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3700 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.830 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6836 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6193 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9346 ; 1.358 ; 1.635 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14389 ; 0.454 ; 1.545 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 7.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;19.333 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1048 ;16.733 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1055 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7776 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1336 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7YP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50754 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 95.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 24.40 REMARK 200 R MERGE (I) : 0.21400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 22.00 REMARK 200 R MERGE FOR SHELL (I) : 2.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7YP3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% POLYETHYLENE GLYCOL 3350, 0.15 M REMARK 280 DL-MALIC PH 7.2, 25% PROPYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.80000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.10500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.10500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.90000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.10500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.10500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.70000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.10500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.90000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.10500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 161.70000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 107.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1A TYD B 500 O HOH B 601 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 65 45.37 -100.49 REMARK 500 ASP A 68 138.08 -178.46 REMARK 500 ALA A 101 -65.06 -134.53 REMARK 500 ALA A 343 -128.78 46.46 REMARK 500 GLU B 65 43.45 -99.26 REMARK 500 ASN B 66 -60.98 -107.91 REMARK 500 ASP B 68 141.30 175.16 REMARK 500 ALA B 101 -65.01 -134.33 REMARK 500 ALA B 343 -130.45 46.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A -1 HIS A 0 -149.37 REMARK 500 ASN A 58 LEU A 59 -144.06 REMARK 500 SER B -1 HIS B 0 -149.58 REMARK 500 ASN B 58 LEU B 59 -145.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.12 SIDE CHAIN REMARK 500 ARG A 84 0.09 SIDE CHAIN REMARK 500 ARG A 159 0.09 SIDE CHAIN REMARK 500 ARG A 165 0.11 SIDE CHAIN REMARK 500 ARG A 188 0.21 SIDE CHAIN REMARK 500 ARG A 255 0.09 SIDE CHAIN REMARK 500 ARG A 372 0.18 SIDE CHAIN REMARK 500 ARG A 392 0.23 SIDE CHAIN REMARK 500 ARG A 397 0.14 SIDE CHAIN REMARK 500 ARG A 417 0.10 SIDE CHAIN REMARK 500 ARG B 159 0.09 SIDE CHAIN REMARK 500 ARG B 165 0.11 SIDE CHAIN REMARK 500 ARG B 188 0.20 SIDE CHAIN REMARK 500 ARG B 218 0.08 SIDE CHAIN REMARK 500 ARG B 238 0.10 SIDE CHAIN REMARK 500 ARG B 245 0.10 SIDE CHAIN REMARK 500 ARG B 372 0.15 SIDE CHAIN REMARK 500 ARG B 392 0.23 SIDE CHAIN REMARK 500 ARG B 397 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7YP5 A 1 417 UNP E5L4T5 E5L4T5_9ACTN 1 417 DBREF 7YP5 B 1 417 UNP E5L4T5 E5L4T5_9ACTN 1 417 SEQADV 7YP5 MET A -19 UNP E5L4T5 INITIATING METHIONINE SEQADV 7YP5 GLY A -18 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER A -17 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER A -16 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A -15 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A -14 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A -13 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A -12 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A -11 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A -10 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER A -9 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER A -8 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 GLY A -7 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 LEU A -6 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 VAL A -5 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 PRO A -4 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 ARG A -3 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 GLY A -2 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER A -1 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS A 0 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 MET B -19 UNP E5L4T5 INITIATING METHIONINE SEQADV 7YP5 GLY B -18 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER B -17 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER B -16 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B -15 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B -14 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B -13 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B -12 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B -11 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B -10 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER B -9 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER B -8 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 GLY B -7 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 LEU B -6 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 VAL B -5 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 PRO B -4 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 ARG B -3 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 GLY B -2 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 SER B -1 UNP E5L4T5 EXPRESSION TAG SEQADV 7YP5 HIS B 0 UNP E5L4T5 EXPRESSION TAG SEQRES 1 A 437 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 437 LEU VAL PRO ARG GLY SER HIS MET ARG ILE LEU PHE ALA SEQRES 3 A 437 THR VAL SER GLU LYS SER HIS LEU PHE THR MET VAL PRO SEQRES 4 A 437 LEU ALA TRP SER LEU ALA ALA ALA GLY HIS GLU VAL HIS SEQRES 5 A 437 VAL ALA SER ASN PRO ALA LEU THR ALA SER ILE LYS SER SEQRES 6 A 437 THR GLY LEU THR ALA VAL PRO VAL GLY LYS ASP HIS ASN SEQRES 7 A 437 LEU HIS GLU MET LEU THR GLU ASN ARG ASP SER LEU GLU SEQRES 8 A 437 ASN PRO LEU SER ASP TRP SER THR PRO GLU LEU ASP ARG SEQRES 9 A 437 HIS SER TRP GLU GLN VAL LEU MET LYS PHE LYS VAL SER SEQRES 10 A 437 VAL MET PHE ALA TYR GLN THR TYR ASN ASP CYS MET VAL SEQRES 11 A 437 HIS GLU LEU VAL ASP TYR ALA ARG HIS TRP GLN PRO ASP SEQRES 12 A 437 LEU VAL ILE TRP ASP PRO VAL THR TYR ALA GLY PRO VAL SEQRES 13 A 437 ALA ALA ARG VAL VAL GLY ALA ALA HIS ALA ARG LEU LEU SEQRES 14 A 437 TRP CYS ILE ASP ILE TYR ALA LYS MET ARG GLU VAL PHE SEQRES 15 A 437 LEU ALA ARG LEU ALA GLU GLN PRO GLU GLU ARG ARG GLU SEQRES 16 A 437 ASP PRO MET ALA ASP TRP LEU GLY GLY ILE LEU GLY ARG SEQRES 17 A 437 TYR GLY HIS THR PHE ASP GLU GLU VAL VAL VAL GLY GLN SEQRES 18 A 437 TRP THR ILE ASP GLN ILE PRO THR SER LEU GLN LEU PRO SEQRES 19 A 437 LEU SER LEU ARG ARG VAL PRO VAL ARG TYR LEU PRO HIS SEQRES 20 A 437 ASN GLY PRO SER GLU ILE PRO ASP TRP LEU ARG GLU ALA SEQRES 21 A 437 PRO GLY ARG PRO ARG VAL VAL LEU THR SER GLY VAL SER SEQRES 22 A 437 ALA ARG ALA ALA LEU GLY GLY THR PHE MET PRO VAL ALA SEQRES 23 A 437 ASP MET ILE ASN THR LEU GLY SER MET ASP ILE ASP VAL SEQRES 24 A 437 VAL ALA ALA LEU PRO PRO GLU GLU VAL GLU ALA LEU GLU SEQRES 25 A 437 LYS VAL PRO ALA ASN THR ARG ILE VAL ASP PHE VAL PRO SEQRES 26 A 437 LEU HIS ALA LEU LEU PRO GLY ALA SER VAL LEU ILE HIS SEQRES 27 A 437 HIS GLY GLY PHE GLY SER TRP GLY THR ALA LEU VAL ASN SEQRES 28 A 437 GLY VAL PRO GLN PHE ILE PRO THR ILE ARG TYR ALA ASP SEQRES 29 A 437 TRP TRP ASN LYS GLY THR SER LEU HIS GLU ALA GLY ALA SEQRES 30 A 437 GLY LEU VAL VAL HIS ALA SER GLU LEU THR ALA GLU VAL SEQRES 31 A 437 LEU ARG GLU SER VAL GLU ARG LEU VAL GLU ASP ALA SER SEQRES 32 A 437 TYR ARG GLU ALA ALA GLU ARG LEU ARG GLU GLU ASN GLN SEQRES 33 A 437 ARG THR PRO THR PRO HIS ASP VAL VAL PRO VAL ILE GLU SEQRES 34 A 437 GLU LEU THR ALA GLU HIS GLY ARG SEQRES 1 B 437 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 437 LEU VAL PRO ARG GLY SER HIS MET ARG ILE LEU PHE ALA SEQRES 3 B 437 THR VAL SER GLU LYS SER HIS LEU PHE THR MET VAL PRO SEQRES 4 B 437 LEU ALA TRP SER LEU ALA ALA ALA GLY HIS GLU VAL HIS SEQRES 5 B 437 VAL ALA SER ASN PRO ALA LEU THR ALA SER ILE LYS SER SEQRES 6 B 437 THR GLY LEU THR ALA VAL PRO VAL GLY LYS ASP HIS ASN SEQRES 7 B 437 LEU HIS GLU MET LEU THR GLU ASN ARG ASP SER LEU GLU SEQRES 8 B 437 ASN PRO LEU SER ASP TRP SER THR PRO GLU LEU ASP ARG SEQRES 9 B 437 HIS SER TRP GLU GLN VAL LEU MET LYS PHE LYS VAL SER SEQRES 10 B 437 VAL MET PHE ALA TYR GLN THR TYR ASN ASP CYS MET VAL SEQRES 11 B 437 HIS GLU LEU VAL ASP TYR ALA ARG HIS TRP GLN PRO ASP SEQRES 12 B 437 LEU VAL ILE TRP ASP PRO VAL THR TYR ALA GLY PRO VAL SEQRES 13 B 437 ALA ALA ARG VAL VAL GLY ALA ALA HIS ALA ARG LEU LEU SEQRES 14 B 437 TRP CYS ILE ASP ILE TYR ALA LYS MET ARG GLU VAL PHE SEQRES 15 B 437 LEU ALA ARG LEU ALA GLU GLN PRO GLU GLU ARG ARG GLU SEQRES 16 B 437 ASP PRO MET ALA ASP TRP LEU GLY GLY ILE LEU GLY ARG SEQRES 17 B 437 TYR GLY HIS THR PHE ASP GLU GLU VAL VAL VAL GLY GLN SEQRES 18 B 437 TRP THR ILE ASP GLN ILE PRO THR SER LEU GLN LEU PRO SEQRES 19 B 437 LEU SER LEU ARG ARG VAL PRO VAL ARG TYR LEU PRO HIS SEQRES 20 B 437 ASN GLY PRO SER GLU ILE PRO ASP TRP LEU ARG GLU ALA SEQRES 21 B 437 PRO GLY ARG PRO ARG VAL VAL LEU THR SER GLY VAL SER SEQRES 22 B 437 ALA ARG ALA ALA LEU GLY GLY THR PHE MET PRO VAL ALA SEQRES 23 B 437 ASP MET ILE ASN THR LEU GLY SER MET ASP ILE ASP VAL SEQRES 24 B 437 VAL ALA ALA LEU PRO PRO GLU GLU VAL GLU ALA LEU GLU SEQRES 25 B 437 LYS VAL PRO ALA ASN THR ARG ILE VAL ASP PHE VAL PRO SEQRES 26 B 437 LEU HIS ALA LEU LEU PRO GLY ALA SER VAL LEU ILE HIS SEQRES 27 B 437 HIS GLY GLY PHE GLY SER TRP GLY THR ALA LEU VAL ASN SEQRES 28 B 437 GLY VAL PRO GLN PHE ILE PRO THR ILE ARG TYR ALA ASP SEQRES 29 B 437 TRP TRP ASN LYS GLY THR SER LEU HIS GLU ALA GLY ALA SEQRES 30 B 437 GLY LEU VAL VAL HIS ALA SER GLU LEU THR ALA GLU VAL SEQRES 31 B 437 LEU ARG GLU SER VAL GLU ARG LEU VAL GLU ASP ALA SER SEQRES 32 B 437 TYR ARG GLU ALA ALA GLU ARG LEU ARG GLU GLU ASN GLN SEQRES 33 B 437 ARG THR PRO THR PRO HIS ASP VAL VAL PRO VAL ILE GLU SEQRES 34 B 437 GLU LEU THR ALA GLU HIS GLY ARG HET TYD A 500 25 HET PGR A 501 5 HET PGR A 502 5 HET PGR A 503 5 HET PGR A 504 5 HET CL A 505 1 HET PGR A 506 5 HET TYD B 500 25 HET PGR B 501 5 HET PGR B 502 5 HET PGR B 503 5 HET PGR B 504 5 HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM PGR R-1,2-PROPANEDIOL HETNAM CL CHLORIDE ION FORMUL 3 TYD 2(C10 H16 N2 O11 P2) FORMUL 4 PGR 9(C3 H8 O2) FORMUL 8 CL CL 1- FORMUL 15 HOH *120(H2 O) HELIX 1 AA1 GLU A 10 MET A 17 1 8 HELIX 2 AA2 MET A 17 ALA A 27 1 11 HELIX 3 AA3 ASN A 36 ALA A 38 5 3 HELIX 4 AA4 LEU A 39 SER A 45 1 7 HELIX 5 AA5 ASN A 58 LEU A 63 1 6 HELIX 6 AA6 GLU A 81 HIS A 85 5 5 HELIX 7 AA7 SER A 86 ALA A 101 1 16 HELIX 8 AA8 ALA A 101 ASP A 107 1 7 HELIX 9 AA9 MET A 109 GLN A 121 1 13 HELIX 10 AB1 TYR A 132 VAL A 141 1 10 HELIX 11 AB2 ASP A 153 GLU A 168 1 16 HELIX 12 AB3 PRO A 170 ARG A 174 5 5 HELIX 13 AB4 ASP A 176 ARG A 188 1 13 HELIX 14 AB5 GLU A 195 GLY A 200 1 6 HELIX 15 AB6 PRO A 208 GLN A 212 5 5 HELIX 16 AB7 PRO A 234 ARG A 238 5 5 HELIX 17 AB8 SER A 253 GLY A 259 1 7 HELIX 18 AB9 PRO A 264 GLY A 273 1 10 HELIX 19 AC1 PRO A 284 ALA A 290 1 7 HELIX 20 AC2 PRO A 305 LEU A 310 1 6 HELIX 21 AC3 GLY A 321 GLY A 332 1 12 HELIX 22 AC4 ASP A 344 ALA A 355 1 12 HELIX 23 AC5 SER A 364 LEU A 366 5 3 HELIX 24 AC6 THR A 367 ASP A 381 1 15 HELIX 25 AC7 ASP A 381 THR A 398 1 18 HELIX 26 AC8 THR A 400 HIS A 415 1 16 HELIX 27 AC9 GLU B 10 ALA B 27 1 18 HELIX 28 AD1 ASN B 36 ALA B 38 5 3 HELIX 29 AD2 LEU B 39 SER B 45 1 7 HELIX 30 AD3 ASN B 58 LEU B 63 1 6 HELIX 31 AD4 GLU B 81 HIS B 85 5 5 HELIX 32 AD5 SER B 86 ALA B 101 1 16 HELIX 33 AD6 ALA B 101 ASP B 107 1 7 HELIX 34 AD7 MET B 109 GLN B 121 1 13 HELIX 35 AD8 TYR B 132 VAL B 141 1 10 HELIX 36 AD9 ASP B 153 GLU B 168 1 16 HELIX 37 AE1 PRO B 170 ARG B 174 5 5 HELIX 38 AE2 ASP B 176 ARG B 188 1 13 HELIX 39 AE3 GLU B 195 GLY B 200 1 6 HELIX 40 AE4 PRO B 208 GLN B 212 5 5 HELIX 41 AE5 PRO B 234 ARG B 238 5 5 HELIX 42 AE6 SER B 253 GLY B 259 1 7 HELIX 43 AE7 PRO B 264 GLY B 273 1 10 HELIX 44 AE8 PRO B 284 ALA B 290 1 7 HELIX 45 AE9 PRO B 305 LEU B 310 1 6 HELIX 46 AF1 GLY B 321 ASN B 331 1 11 HELIX 47 AF2 ASP B 344 ALA B 355 1 12 HELIX 48 AF3 SER B 364 LEU B 366 5 3 HELIX 49 AF4 THR B 367 ASP B 381 1 15 HELIX 50 AF5 ASP B 381 THR B 398 1 18 HELIX 51 AF6 THR B 400 GLY B 416 1 17 SHEET 1 AA1 7 THR A 49 PRO A 52 0 SHEET 2 AA1 7 GLU A 30 SER A 35 1 N VAL A 33 O THR A 49 SHEET 3 AA1 7 ARG A 2 ALA A 6 1 N ILE A 3 O GLU A 30 SHEET 4 AA1 7 LEU A 124 TRP A 127 1 O LEU A 124 N LEU A 4 SHEET 5 AA1 7 ALA A 144 LEU A 149 1 O ALA A 144 N VAL A 125 SHEET 6 AA1 7 TRP A 202 ASP A 205 1 O ILE A 204 N ARG A 147 SHEET 7 AA1 7 ARG A 219 PRO A 221 1 O VAL A 220 N THR A 203 SHEET 1 AA2 6 THR A 298 VAL A 301 0 SHEET 2 AA2 6 ASP A 278 ALA A 282 1 N ALA A 281 O ARG A 299 SHEET 3 AA2 6 ARG A 245 THR A 249 1 N VAL A 246 O ASP A 278 SHEET 4 AA2 6 VAL A 315 ILE A 317 1 O ILE A 317 N VAL A 247 SHEET 5 AA2 6 GLN A 335 THR A 339 1 O PHE A 336 N LEU A 316 SHEET 6 AA2 6 GLY A 358 HIS A 362 1 O LEU A 359 N ILE A 337 SHEET 1 AA3 7 THR B 49 PRO B 52 0 SHEET 2 AA3 7 GLU B 30 SER B 35 1 N VAL B 33 O THR B 49 SHEET 3 AA3 7 ARG B 2 ALA B 6 1 N ILE B 3 O GLU B 30 SHEET 4 AA3 7 LEU B 124 TRP B 127 1 O LEU B 124 N LEU B 4 SHEET 5 AA3 7 ALA B 144 LEU B 149 1 O ALA B 144 N VAL B 125 SHEET 6 AA3 7 TRP B 202 ASP B 205 1 O ILE B 204 N ARG B 147 SHEET 7 AA3 7 ARG B 219 PRO B 221 1 O VAL B 220 N THR B 203 SHEET 1 AA4 6 THR B 298 VAL B 301 0 SHEET 2 AA4 6 ASP B 278 ALA B 282 1 N ALA B 281 O ARG B 299 SHEET 3 AA4 6 ARG B 245 THR B 249 1 N VAL B 246 O ASP B 278 SHEET 4 AA4 6 VAL B 315 ILE B 317 1 O ILE B 317 N VAL B 247 SHEET 5 AA4 6 GLN B 335 THR B 339 1 O PHE B 336 N LEU B 316 SHEET 6 AA4 6 GLY B 358 HIS B 362 1 O LEU B 359 N ILE B 337 CRYST1 106.210 106.210 215.600 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004638 0.00000