HEADER VIRAL PROTEIN 05-AUG-22 7YQB TITLE FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF NOROVIRUS GII.6 IN TITLE 2 RECOGNIZING HISTO-BLOOD GROUP ANTIGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NOROVIRUS P DOMAIN PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS GII; SOURCE 3 ORGANISM_TAXID: 122929; SOURCE 4 GENE: ORF2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.CONG,Z.J.DUAN REVDAT 2 29-NOV-23 7YQB 1 REMARK REVDAT 1 03-MAY-23 7YQB 0 JRNL AUTH X.CONG,H.B.LI,X.M.SUN,J.X.QI,Q.ZHANG,Z.J.DUAN,Y.XU,W.L.LIU JRNL TITL FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF NOROVIRUS JRNL TITL 2 GII.6 IN RECOGNIZING HISTO-BLOOD GROUP ANTIGENS. JRNL REF VIROL SIN V. 38 56 2023 JRNL REFN ISSN 1995-820X JRNL PMID 36216242 JRNL DOI 10.1016/J.VIRS.2022.09.010 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 66173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3308 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.9124 - 3.8997 1.00 2890 159 0.1356 0.1428 REMARK 3 2 3.8997 - 3.4069 1.00 2889 144 0.1513 0.1922 REMARK 3 3 3.4069 - 3.0955 1.00 2864 157 0.1638 0.1704 REMARK 3 4 3.0955 - 2.8736 1.00 2860 122 0.1700 0.1936 REMARK 3 5 2.8736 - 2.7042 1.00 2839 140 0.1856 0.2134 REMARK 3 6 2.7042 - 2.5688 1.00 2845 144 0.1822 0.2116 REMARK 3 7 2.5688 - 2.4570 1.00 2824 150 0.1809 0.1994 REMARK 3 8 2.4570 - 2.3624 1.00 2825 141 0.1761 0.1780 REMARK 3 9 2.3624 - 2.2809 1.00 2803 150 0.1701 0.1986 REMARK 3 10 2.2809 - 2.2096 1.00 2790 167 0.1719 0.2314 REMARK 3 11 2.2096 - 2.1464 1.00 2822 130 0.1763 0.2197 REMARK 3 12 2.1464 - 2.0899 1.00 2798 174 0.1776 0.2125 REMARK 3 13 2.0899 - 2.0389 1.00 2807 148 0.1746 0.1951 REMARK 3 14 2.0389 - 1.9926 0.98 2733 141 0.1840 0.1920 REMARK 3 15 1.9926 - 1.9502 0.97 2719 134 0.1881 0.1947 REMARK 3 16 1.9502 - 1.9111 0.94 2645 145 0.1897 0.2608 REMARK 3 17 1.9111 - 1.8751 0.90 2514 123 0.1958 0.2032 REMARK 3 18 1.8416 - 1.8104 0.80 2273 112 0.1908 0.2019 REMARK 3 19 1.8104 - 1.7812 0.77 2128 105 0.1965 0.2150 REMARK 3 20 1.7812 - 1.7538 0.71 2009 98 0.2022 0.2418 REMARK 3 21 1.7538 - 1.7280 0.67 1853 109 0.2210 0.2297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 80.7992 102.2513 24.5242 REMARK 3 T TENSOR REMARK 3 T11: 0.0524 T22: 0.0562 REMARK 3 T33: 0.0672 T12: 0.0025 REMARK 3 T13: -0.0048 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1770 L22: 0.3279 REMARK 3 L33: 0.6841 L12: -0.0952 REMARK 3 L13: 0.0021 L23: 0.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0154 S13: 0.0072 REMARK 3 S21: 0.0421 S22: 0.0266 S23: -0.0290 REMARK 3 S31: -0.0344 S32: 0.0116 S33: -0.0600 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 70.0940 94.5604 4.6354 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0658 REMARK 3 T33: 0.0650 T12: -0.0035 REMARK 3 T13: 0.0012 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2601 L22: 0.2373 REMARK 3 L33: 0.4936 L12: -0.0710 REMARK 3 L13: 0.1295 L23: -0.0727 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.0136 S13: 0.0026 REMARK 3 S21: -0.0452 S22: 0.0096 S23: 0.0218 REMARK 3 S31: 0.0485 S32: -0.0528 S33: -0.0127 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YQB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71255 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8430 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4RLZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE PH4.6, 20% (VOL/VOL) 2-PROPANOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.22200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.50500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.38850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.50500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.22200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.38850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 THR A 3 REMARK 465 GLN A 72 REMARK 465 THR A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 SER A 76 REMARK 465 ALA A 77 REMARK 465 ASP A 78 REMARK 465 SER A 79 REMARK 465 THR A 80 REMARK 465 ASP A 81 REMARK 465 SER A 82 REMARK 465 ALA A 83 REMARK 465 PRO A 84 REMARK 465 ARG A 85 REMARK 465 VAL A 86 REMARK 465 ARG A 87 REMARK 465 SER B 1 REMARK 465 LYS B 2 REMARK 465 THR B 3 REMARK 465 SER B 74 REMARK 465 ARG B 75 REMARK 465 SER B 76 REMARK 465 ALA B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 THR B 80 REMARK 465 ASP B 81 REMARK 465 SER B 82 REMARK 465 ALA B 83 REMARK 465 PRO B 84 REMARK 465 ARG B 85 REMARK 465 VAL B 86 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 292 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 455 O HOH B 540 1.94 REMARK 500 OD1 ASN A 88 O HOH A 401 1.95 REMARK 500 O HOH B 695 O HOH B 707 1.95 REMARK 500 O HOH A 539 O HOH B 652 2.01 REMARK 500 OD1 ASN A 33 O HOH A 402 2.07 REMARK 500 O HOH A 752 O HOH A 756 2.07 REMARK 500 O HOH A 569 O HOH A 733 2.08 REMARK 500 O HOH A 515 O HOH A 726 2.12 REMARK 500 O HOH A 610 O HOH B 406 2.15 REMARK 500 O HOH B 406 O HOH B 573 2.15 REMARK 500 NZ LYS A 96 O HOH A 403 2.17 REMARK 500 O HOH B 468 O HOH B 651 2.17 REMARK 500 O HOH A 451 O HOH A 625 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 417 O HOH B 674 2775 2.05 REMARK 500 O HOH A 631 O HOH A 746 2774 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU A 201 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 ASN A 292 C - N - CA ANGL. DEV. = 24.5 DEGREES REMARK 500 ASN B 292 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 39 56.74 -144.73 REMARK 500 THR A 200 67.16 61.56 REMARK 500 LEU A 201 152.09 -47.55 REMARK 500 ASN A 291 -165.44 -79.30 REMARK 500 ASN A 292 154.54 -46.91 REMARK 500 GLN B 39 54.98 -142.89 REMARK 500 ALA B 228 58.69 -93.57 REMARK 500 ASN B 292 151.99 -47.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 291 ASN A 292 -132.64 REMARK 500 ASN B 292 PRO B 293 -145.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 753 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 754 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 755 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 757 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 753 DISTANCE = 6.11 ANGSTROMS DBREF1 7YQB A 1 317 UNP A0A2U9GLY1_9CALI DBREF2 7YQB A A0A2U9GLY1 221 537 DBREF1 7YQB B 1 317 UNP A0A2U9GLY1_9CALI DBREF2 7YQB B A0A2U9GLY1 221 537 SEQADV 7YQB PRO A 84 UNP A0A2U9GLY GLN 304 ENGINEERED MUTATION SEQADV 7YQB PRO B 84 UNP A0A2U9GLY GLN 304 ENGINEERED MUTATION SEQRES 1 A 317 SER LYS THR LYS PRO PHE THR LEU PRO ILE LEU THR LEU SEQRES 2 A 317 GLY GLU LEU SER ASN SER ARG PHE PRO ALA PRO ILE ASP SEQRES 3 A 317 MET LEU TYR THR ASP PRO ASN GLU ALA ILE VAL VAL GLN SEQRES 4 A 317 PRO GLN ASN GLY ARG CYS THR LEU ASP GLY THR LEU GLN SEQRES 5 A 317 GLY THR THR GLN LEU VAL PRO THR GLN ILE CYS SER PHE SEQRES 6 A 317 ARG GLY THR LEU ILE SER GLN THR SER ARG SER ALA ASP SEQRES 7 A 317 SER THR ASP SER ALA PRO ARG VAL ARG ASN HIS PRO LEU SEQRES 8 A 317 HIS VAL GLN LEU LYS ASN LEU ASP GLY THR PRO TYR ASP SEQRES 9 A 317 PRO THR ASP GLU VAL PRO ALA VAL LEU GLY ALA ILE ASP SEQRES 10 A 317 PHE LYS GLY THR VAL PHE GLY VAL ALA SER GLN ARG ASN SEQRES 11 A 317 THR THR GLY ASN SER ILE GLY ALA THR ARG ALA HIS GLU SEQRES 12 A 317 VAL HIS ILE ASP THR THR ASN PRO ARG TYR THR PRO LYS SEQRES 13 A 317 LEU GLY SER VAL LEU MET TYR SER GLU SER ASN ASP PHE SEQRES 14 A 317 ASP ASP GLY GLN PRO THR ARG PHE THR PRO ILE GLY MET SEQRES 15 A 317 GLY ALA ASP ASP TRP HIS GLN TRP GLU LEU PRO GLU TYR SEQRES 16 A 317 SER GLY HIS LEU THR LEU ASN MET ASN LEU ALA PRO ALA SEQRES 17 A 317 VAL ALA PRO ALA PHE PRO GLY GLU ARG ILE LEU PHE PHE SEQRES 18 A 317 ARG SER VAL VAL PRO SER ALA GLY GLY TYR GLY SER GLY SEQRES 19 A 317 HIS ILE ASP CYS LEU ILE PRO GLN GLU TRP VAL GLN HIS SEQRES 20 A 317 PHE TYR GLN GLU ALA ALA PRO SER GLN SER ALA VAL ALA SEQRES 21 A 317 LEU ILE ARG TYR VAL ASN PRO ASP THR GLY ARG ASN ILE SEQRES 22 A 317 PHE GLU ALA LYS LEU HIS ARG GLU GLY PHE ILE THR VAL SEQRES 23 A 317 ALA ASN SER GLY ASN ASN PRO ILE VAL VAL PRO PRO ASN SEQRES 24 A 317 GLY TYR PHE ARG PHE GLU ALA TRP VAL ASN GLN PHE TYR SEQRES 25 A 317 THR LEU THR PRO MET SEQRES 1 B 317 SER LYS THR LYS PRO PHE THR LEU PRO ILE LEU THR LEU SEQRES 2 B 317 GLY GLU LEU SER ASN SER ARG PHE PRO ALA PRO ILE ASP SEQRES 3 B 317 MET LEU TYR THR ASP PRO ASN GLU ALA ILE VAL VAL GLN SEQRES 4 B 317 PRO GLN ASN GLY ARG CYS THR LEU ASP GLY THR LEU GLN SEQRES 5 B 317 GLY THR THR GLN LEU VAL PRO THR GLN ILE CYS SER PHE SEQRES 6 B 317 ARG GLY THR LEU ILE SER GLN THR SER ARG SER ALA ASP SEQRES 7 B 317 SER THR ASP SER ALA PRO ARG VAL ARG ASN HIS PRO LEU SEQRES 8 B 317 HIS VAL GLN LEU LYS ASN LEU ASP GLY THR PRO TYR ASP SEQRES 9 B 317 PRO THR ASP GLU VAL PRO ALA VAL LEU GLY ALA ILE ASP SEQRES 10 B 317 PHE LYS GLY THR VAL PHE GLY VAL ALA SER GLN ARG ASN SEQRES 11 B 317 THR THR GLY ASN SER ILE GLY ALA THR ARG ALA HIS GLU SEQRES 12 B 317 VAL HIS ILE ASP THR THR ASN PRO ARG TYR THR PRO LYS SEQRES 13 B 317 LEU GLY SER VAL LEU MET TYR SER GLU SER ASN ASP PHE SEQRES 14 B 317 ASP ASP GLY GLN PRO THR ARG PHE THR PRO ILE GLY MET SEQRES 15 B 317 GLY ALA ASP ASP TRP HIS GLN TRP GLU LEU PRO GLU TYR SEQRES 16 B 317 SER GLY HIS LEU THR LEU ASN MET ASN LEU ALA PRO ALA SEQRES 17 B 317 VAL ALA PRO ALA PHE PRO GLY GLU ARG ILE LEU PHE PHE SEQRES 18 B 317 ARG SER VAL VAL PRO SER ALA GLY GLY TYR GLY SER GLY SEQRES 19 B 317 HIS ILE ASP CYS LEU ILE PRO GLN GLU TRP VAL GLN HIS SEQRES 20 B 317 PHE TYR GLN GLU ALA ALA PRO SER GLN SER ALA VAL ALA SEQRES 21 B 317 LEU ILE ARG TYR VAL ASN PRO ASP THR GLY ARG ASN ILE SEQRES 22 B 317 PHE GLU ALA LYS LEU HIS ARG GLU GLY PHE ILE THR VAL SEQRES 23 B 317 ALA ASN SER GLY ASN ASN PRO ILE VAL VAL PRO PRO ASN SEQRES 24 B 317 GLY TYR PHE ARG PHE GLU ALA TRP VAL ASN GLN PHE TYR SEQRES 25 B 317 THR LEU THR PRO MET FORMUL 3 HOH *710(H2 O) HELIX 1 AA1 THR A 12 LEU A 16 5 5 HELIX 2 AA2 VAL A 58 ILE A 62 5 5 HELIX 3 AA3 PRO A 241 ALA A 252 1 12 HELIX 4 AA4 THR B 12 LEU B 16 5 5 HELIX 5 AA5 VAL B 58 ILE B 62 5 5 HELIX 6 AA6 PRO B 241 ALA B 252 1 12 SHEET 1 AA1 3 MET A 27 TYR A 29 0 SHEET 2 AA1 3 GLU A 216 VAL A 224 -1 O PHE A 220 N TYR A 29 SHEET 3 AA1 3 HIS A 235 CYS A 238 -1 O ILE A 236 N SER A 223 SHEET 1 AA2 6 MET A 27 TYR A 29 0 SHEET 2 AA2 6 GLU A 216 VAL A 224 -1 O PHE A 220 N TYR A 29 SHEET 3 AA2 6 PHE A 283 ALA A 287 -1 O VAL A 286 N ARG A 217 SHEET 4 AA2 6 ARG A 271 HIS A 279 -1 N LYS A 277 O THR A 285 SHEET 5 AA2 6 VAL A 259 ASN A 266 -1 N ALA A 260 O LEU A 278 SHEET 6 AA2 6 TYR A 301 VAL A 308 -1 O ALA A 306 N LEU A 261 SHEET 1 AA3 7 PHE A 65 LEU A 69 0 SHEET 2 AA3 7 HIS A 89 LYS A 96 -1 O GLN A 94 N THR A 68 SHEET 3 AA3 7 SER A 159 SER A 164 -1 O SER A 164 N HIS A 89 SHEET 4 AA3 7 THR A 139 ASP A 147 -1 N HIS A 145 O TYR A 163 SHEET 5 AA3 7 THR A 121 ARG A 129 -1 N GLY A 124 O VAL A 144 SHEET 6 AA3 7 PRO A 174 MET A 182 -1 O ILE A 180 N PHE A 123 SHEET 7 AA3 7 PHE A 65 LEU A 69 -1 N GLY A 67 O THR A 175 SHEET 1 AA4 3 MET B 27 TYR B 29 0 SHEET 2 AA4 3 GLU B 216 VAL B 224 -1 O PHE B 220 N TYR B 29 SHEET 3 AA4 3 HIS B 235 CYS B 238 -1 O CYS B 238 N PHE B 221 SHEET 1 AA5 6 MET B 27 TYR B 29 0 SHEET 2 AA5 6 GLU B 216 VAL B 224 -1 O PHE B 220 N TYR B 29 SHEET 3 AA5 6 PHE B 283 ALA B 287 -1 O VAL B 286 N ARG B 217 SHEET 4 AA5 6 ASN B 272 HIS B 279 -1 N HIS B 279 O PHE B 283 SHEET 5 AA5 6 VAL B 259 VAL B 265 -1 N TYR B 264 O ILE B 273 SHEET 6 AA5 6 TYR B 301 VAL B 308 -1 O ALA B 306 N LEU B 261 SHEET 1 AA6 7 PHE B 65 ILE B 70 0 SHEET 2 AA6 7 HIS B 89 LYS B 96 -1 O GLN B 94 N THR B 68 SHEET 3 AA6 7 SER B 159 SER B 164 -1 O SER B 164 N HIS B 89 SHEET 4 AA6 7 THR B 139 ASP B 147 -1 N HIS B 145 O TYR B 163 SHEET 5 AA6 7 THR B 121 ARG B 129 -1 N GLY B 124 O VAL B 144 SHEET 6 AA6 7 PRO B 174 MET B 182 -1 O THR B 178 N VAL B 125 SHEET 7 AA6 7 PHE B 65 ILE B 70 -1 N PHE B 65 O PHE B 177 CRYST1 62.444 94.777 109.010 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009173 0.00000