HEADER TRANSFERASE 08-AUG-22 7YQQ TITLE CRYSTAL STRUCTURE OF XCC NAMPT AND ITS COMPLEX WITH NMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-B CELL ENHANCING FACTOR RELATED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS; SOURCE 3 ORGANISM_TAXID: 340; SOURCE 4 STRAIN: 8004; SOURCE 5 GENE: XC_0719; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS XCC NAMPT IN COMPLEXED STATE WITH NMN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.L.XU,Z.H.MING REVDAT 2 04-SEP-24 7YQQ 1 JRNL REVDAT 1 14-FEB-24 7YQQ 0 JRNL AUTH G.XU,J.MA,Q.FANG,Q.PENG,X.JIAO,W.HU,Q.ZHAO,Y.KONG,F.LIU, JRNL AUTH 2 X.SHI,D.J.TANG,J.L.TANG,Z.MING JRNL TITL STRUCTURAL INSIGHTS INTO XANTHOMONAS CAMPESTRIS PV. JRNL TITL 2 CAMPESTRIS NAD + BIOSYNTHESIS VIA THE NAM SALVAGE PATHWAY. JRNL REF COMMUN BIOL V. 7 255 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 38429435 JRNL DOI 10.1038/S42003-024-05921-3 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 58992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.8700 - 5.2189 0.99 5067 166 0.1897 0.2166 REMARK 3 2 5.2189 - 4.1428 1.00 4796 157 0.1489 0.1606 REMARK 3 3 4.1428 - 3.6192 0.99 4681 154 0.1604 0.1992 REMARK 3 4 3.6192 - 3.2883 0.98 4653 148 0.1682 0.2091 REMARK 3 5 3.2883 - 3.0526 0.98 4566 152 0.1788 0.2232 REMARK 3 6 3.0526 - 2.8727 0.97 4525 147 0.1893 0.2241 REMARK 3 7 2.8727 - 2.7288 0.96 4483 147 0.2008 0.2716 REMARK 3 8 2.7288 - 2.6100 0.94 4348 143 0.1967 0.2737 REMARK 3 9 2.6100 - 2.5095 0.93 4270 138 0.1973 0.2354 REMARK 3 10 2.5095 - 2.4229 0.91 4230 137 0.2011 0.2110 REMARK 3 11 2.4229 - 2.3472 0.91 4180 137 0.2058 0.2431 REMARK 3 12 2.3472 - 2.2801 0.87 4001 124 0.2488 0.2858 REMARK 3 13 2.2801 - 2.2201 0.73 3331 111 0.3439 0.3648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -17.2920 -51.9618 -4.2112 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.2990 REMARK 3 T33: 0.4428 T12: 0.0058 REMARK 3 T13: -0.0075 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 0.7983 L22: 0.0928 REMARK 3 L33: 0.4138 L12: 0.1244 REMARK 3 L13: -0.1082 L23: 0.0222 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0767 S13: 0.0573 REMARK 3 S21: -0.0165 S22: 0.0129 S23: -0.0003 REMARK 3 S31: -0.0019 S32: -0.0283 S33: -0.0174 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 106.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 37.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7YQO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM TARTRATE, N,N-BIS(3-D REMARK 280 -GLUCONAMIDOPROPYL) CHOLAMIDE, N,N-DIMETHYLDECYLAMINE-N-OXIDE, REMARK 280 NMN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.03667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 212.07333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 159.05500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 265.09167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.01833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.03667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 212.07333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 265.09167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 159.05500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.01833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 613 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 401 REMARK 465 GLN A 402 REMARK 465 GLY A 403 REMARK 465 LYS A 404 REMARK 465 MET B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 SER B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 THR B 231 REMARK 465 ILE B 232 REMARK 465 THR B 233 REMARK 465 SER B 234 REMARK 465 TRP B 235 REMARK 465 GLY B 236 REMARK 465 ARG B 237 REMARK 465 GLU B 238 REMARK 465 ARG B 239 REMARK 465 GLU B 240 REMARK 465 VAL B 241 REMARK 465 ASP B 242 REMARK 465 ALA B 243 REMARK 465 TYR B 244 REMARK 465 ARG B 245 REMARK 465 ASN B 246 REMARK 465 MET B 247 REMARK 465 LEU B 248 REMARK 465 THR B 249 REMARK 465 GLN B 250 REMARK 465 PHE B 251 REMARK 465 ALA B 252 REMARK 465 ARG B 253 REMARK 465 ASP B 397 REMARK 465 PRO B 398 REMARK 465 ILE B 399 REMARK 465 THR B 400 REMARK 465 ASP B 401 REMARK 465 GLN B 402 REMARK 465 GLY B 403 REMARK 465 LYS B 404 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 672 O HOH A 776 1.81 REMARK 500 O HOH B 715 O HOH B 726 1.85 REMARK 500 O HOH B 683 O HOH B 712 1.86 REMARK 500 O HOH A 744 O HOH A 811 1.94 REMARK 500 O HOH B 702 O HOH B 744 1.97 REMARK 500 OD1 ASP B 438 O HOH B 501 1.98 REMARK 500 OG1 THR A 432 O HOH A 601 2.00 REMARK 500 O HOH B 554 O HOH B 587 2.01 REMARK 500 O PRO B 294 O HOH B 502 2.02 REMARK 500 O HOH A 759 O HOH A 819 2.02 REMARK 500 O HOH B 698 O HOH B 699 2.03 REMARK 500 OD2 ASP B 164 O HOH B 503 2.06 REMARK 500 O HOH B 729 O HOH B 739 2.06 REMARK 500 O HOH B 568 O HOH B 589 2.07 REMARK 500 O HOH A 791 O HOH A 794 2.08 REMARK 500 OE1 GLU A 228 NZ LYS B 15 2.08 REMARK 500 OE2 GLU A 347 O HOH A 602 2.11 REMARK 500 OE1 GLU A 457 O HOH A 603 2.13 REMARK 500 O2 PO4 A 502 O HOH A 604 2.13 REMARK 500 O HOH A 810 O HOH B 739 2.13 REMARK 500 OE2 GLU A 77 O HOH A 605 2.14 REMARK 500 O HOH B 604 O HOH B 639 2.15 REMARK 500 O ALA A 16 O HOH A 606 2.16 REMARK 500 OD1 ASP B 67 O HOH B 504 2.17 REMARK 500 O HOH B 732 O HOH B 746 2.17 REMARK 500 O HOH B 506 O HOH B 694 2.18 REMARK 500 O HOH B 606 O HOH B 676 2.18 REMARK 500 OE2 GLU B 457 O HOH B 505 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 798 O HOH A 817 8545 1.99 REMARK 500 NH2 ARG A 272 OE2 GLU B 312 10444 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 111 31.17 70.37 REMARK 500 ALA A 124 43.29 -92.01 REMARK 500 HIS A 274 33.95 -87.07 REMARK 500 HIS A 328 -19.73 74.41 REMARK 500 LYS A 370 49.76 -83.82 REMARK 500 LYS A 396 -74.88 -109.64 REMARK 500 ALA A 431 -143.90 -67.02 REMARK 500 THR A 432 -77.26 52.49 REMARK 500 LEU A 451 -80.05 -98.49 REMARK 500 ASN B 6 106.44 -163.20 REMARK 500 HIS B 229 85.78 23.70 REMARK 500 SER B 262 -155.22 -163.09 REMARK 500 HIS B 328 -10.97 71.03 REMARK 500 LYS B 370 46.51 -79.48 REMARK 500 ALA B 384 148.72 -171.94 REMARK 500 LEU B 451 -89.90 -106.66 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7YQQ A 1 468 UNP A0A0H2X5R2_XANC8 DBREF2 7YQQ A A0A0H2X5R2 1 468 DBREF1 7YQQ B 1 468 UNP A0A0H2X5R2_XANC8 DBREF2 7YQQ B A0A0H2X5R2 1 468 SEQADV 7YQQ MET A -13 UNP A0A0H2X5R INITIATING METHIONINE SEQADV 7YQQ GLY A -12 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER A -11 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER A -10 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS A -9 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS A -8 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS A -7 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS A -6 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS A -5 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS A -4 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER A -3 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ GLN A -2 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ GLY A -1 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER A 0 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ MET B -13 UNP A0A0H2X5R INITIATING METHIONINE SEQADV 7YQQ GLY B -12 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER B -11 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER B -10 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS B -9 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS B -8 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS B -7 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS B -6 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS B -5 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ HIS B -4 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER B -3 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ GLN B -2 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ GLY B -1 UNP A0A0H2X5R EXPRESSION TAG SEQADV 7YQQ SER B 0 UNP A0A0H2X5R EXPRESSION TAG SEQRES 1 A 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLY SEQRES 2 A 482 SER MET HIS TYR LEU ASP ASN LEU LEU LEU ASN THR ASP SEQRES 3 A 482 SER TYR LYS ALA SER HIS TRP LEU GLN TYR PRO PRO GLY SEQRES 4 A 482 THR ASP ALA SER PHE PHE TYR VAL GLU SER ARG GLY GLY SEQRES 5 A 482 VAL TYR ASP GLN THR ALA PHE PHE GLY LEU GLN SER ILE SEQRES 6 A 482 LEU LYS GLU ALA ILE ASN ARG PRO VAL THR HIS ALA ASP SEQRES 7 A 482 ILE ASP ASP ALA LYS ALA LEU LEU ALA ALA HIS GLY GLU SEQRES 8 A 482 PRO PHE ASN GLU ALA GLY TRP ARG ASP ILE VAL ASP ARG SEQRES 9 A 482 LEU GLY GLY GLN LEU PRO ILE ARG ILE ARG ALA VAL PRO SEQRES 10 A 482 GLU GLY CYS VAL VAL PRO THR HIS ASN VAL LEU MET THR SEQRES 11 A 482 ILE GLU SER THR ASP ALA LYS ALA PHE TRP VAL PRO SER SEQRES 12 A 482 TYR LEU GLU THR LEU LEU LEU ARG VAL TRP TYR PRO VAL SEQRES 13 A 482 THR VAL ALA THR VAL SER TRP GLN VAL LYS GLN ILE VAL SEQRES 14 A 482 ARG ASP PHE LEU GLN ARG THR SER ASP ASP PRO GLU GLY SEQRES 15 A 482 GLN LEU PRO PHE LYS LEU HIS ASP PHE GLY ALA ARG GLY SEQRES 16 A 482 VAL SER SER LEU GLY SER ALA ALA LEU GLY GLY ALA ALA SEQRES 17 A 482 HIS LEU VAL ASN PHE LEU GLY THR ASP THR LEU SER ALA SEQRES 18 A 482 LEU LEU LEU ALA ARG ALA HIS TYR HIS THR PRO VAL ALA SEQRES 19 A 482 GLY TYR SER ILE PRO ALA ALA GLU HIS SER THR ILE THR SEQRES 20 A 482 SER TRP GLY ARG GLU ARG GLU VAL ASP ALA TYR ARG ASN SEQRES 21 A 482 MET LEU THR GLN PHE ALA ARG PRO GLY ALA ILE VAL ALA SEQRES 22 A 482 VAL VAL SER ASP SER TYR ASP ILE TYR ARG ALA ILE ARG SEQRES 23 A 482 GLU HIS TRP GLY THR THR LEU ARG GLU GLU ILE ILE ALA SEQRES 24 A 482 SER GLY ALA THR VAL VAL ILE ARG PRO ASP SER GLY ASP SEQRES 25 A 482 PRO VAL ASP VAL VAL GLU GLN CYS LEU LEU LEU LEU ASP SEQRES 26 A 482 GLU ALA PHE GLY HIS GLN VAL ASN GLY LYS GLY TYR LYS SEQRES 27 A 482 VAL LEU ASN HIS VAL ARG VAL ILE GLN GLY ASP GLY ILE SEQRES 28 A 482 ASN PRO GLN SER LEU ARG ALA ILE LEU GLU ARG ILE THR SEQRES 29 A 482 ALA ALA GLY TYR ALA ALA ASP ASN VAL ALA PHE GLY MET SEQRES 30 A 482 GLY GLY ALA LEU LEU GLN LYS VAL ASP ARG ASP THR GLN SEQRES 31 A 482 LYS PHE ALA LEU LYS CYS SER ALA VAL ARG VAL ASP GLY SEQRES 32 A 482 ALA TRP ILE ASP VAL TYR LYS ASP PRO ILE THR ASP GLN SEQRES 33 A 482 GLY LYS GLN SER LYS ARG GLY ARG LEU THR LEU LEU ARG SEQRES 34 A 482 ASP ARG ALA THR GLY GLN TYR ARG SER ALA LEU LEU ASP SEQRES 35 A 482 GLU VAL ALA THR HIS ALA GLY ASP SER ASP ASP ALA LEU SEQRES 36 A 482 VAL THR VAL TRP GLU ASN GLY GLN MET LEU ARG GLU TRP SEQRES 37 A 482 THR LEU GLU GLN VAL ARG ALA HIS ALA ASP ALA ALA ARG SEQRES 38 A 482 LEU SEQRES 1 B 482 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN GLY SEQRES 2 B 482 SER MET HIS TYR LEU ASP ASN LEU LEU LEU ASN THR ASP SEQRES 3 B 482 SER TYR LYS ALA SER HIS TRP LEU GLN TYR PRO PRO GLY SEQRES 4 B 482 THR ASP ALA SER PHE PHE TYR VAL GLU SER ARG GLY GLY SEQRES 5 B 482 VAL TYR ASP GLN THR ALA PHE PHE GLY LEU GLN SER ILE SEQRES 6 B 482 LEU LYS GLU ALA ILE ASN ARG PRO VAL THR HIS ALA ASP SEQRES 7 B 482 ILE ASP ASP ALA LYS ALA LEU LEU ALA ALA HIS GLY GLU SEQRES 8 B 482 PRO PHE ASN GLU ALA GLY TRP ARG ASP ILE VAL ASP ARG SEQRES 9 B 482 LEU GLY GLY GLN LEU PRO ILE ARG ILE ARG ALA VAL PRO SEQRES 10 B 482 GLU GLY CYS VAL VAL PRO THR HIS ASN VAL LEU MET THR SEQRES 11 B 482 ILE GLU SER THR ASP ALA LYS ALA PHE TRP VAL PRO SER SEQRES 12 B 482 TYR LEU GLU THR LEU LEU LEU ARG VAL TRP TYR PRO VAL SEQRES 13 B 482 THR VAL ALA THR VAL SER TRP GLN VAL LYS GLN ILE VAL SEQRES 14 B 482 ARG ASP PHE LEU GLN ARG THR SER ASP ASP PRO GLU GLY SEQRES 15 B 482 GLN LEU PRO PHE LYS LEU HIS ASP PHE GLY ALA ARG GLY SEQRES 16 B 482 VAL SER SER LEU GLY SER ALA ALA LEU GLY GLY ALA ALA SEQRES 17 B 482 HIS LEU VAL ASN PHE LEU GLY THR ASP THR LEU SER ALA SEQRES 18 B 482 LEU LEU LEU ALA ARG ALA HIS TYR HIS THR PRO VAL ALA SEQRES 19 B 482 GLY TYR SER ILE PRO ALA ALA GLU HIS SER THR ILE THR SEQRES 20 B 482 SER TRP GLY ARG GLU ARG GLU VAL ASP ALA TYR ARG ASN SEQRES 21 B 482 MET LEU THR GLN PHE ALA ARG PRO GLY ALA ILE VAL ALA SEQRES 22 B 482 VAL VAL SER ASP SER TYR ASP ILE TYR ARG ALA ILE ARG SEQRES 23 B 482 GLU HIS TRP GLY THR THR LEU ARG GLU GLU ILE ILE ALA SEQRES 24 B 482 SER GLY ALA THR VAL VAL ILE ARG PRO ASP SER GLY ASP SEQRES 25 B 482 PRO VAL ASP VAL VAL GLU GLN CYS LEU LEU LEU LEU ASP SEQRES 26 B 482 GLU ALA PHE GLY HIS GLN VAL ASN GLY LYS GLY TYR LYS SEQRES 27 B 482 VAL LEU ASN HIS VAL ARG VAL ILE GLN GLY ASP GLY ILE SEQRES 28 B 482 ASN PRO GLN SER LEU ARG ALA ILE LEU GLU ARG ILE THR SEQRES 29 B 482 ALA ALA GLY TYR ALA ALA ASP ASN VAL ALA PHE GLY MET SEQRES 30 B 482 GLY GLY ALA LEU LEU GLN LYS VAL ASP ARG ASP THR GLN SEQRES 31 B 482 LYS PHE ALA LEU LYS CYS SER ALA VAL ARG VAL ASP GLY SEQRES 32 B 482 ALA TRP ILE ASP VAL TYR LYS ASP PRO ILE THR ASP GLN SEQRES 33 B 482 GLY LYS GLN SER LYS ARG GLY ARG LEU THR LEU LEU ARG SEQRES 34 B 482 ASP ARG ALA THR GLY GLN TYR ARG SER ALA LEU LEU ASP SEQRES 35 B 482 GLU VAL ALA THR HIS ALA GLY ASP SER ASP ASP ALA LEU SEQRES 36 B 482 VAL THR VAL TRP GLU ASN GLY GLN MET LEU ARG GLU TRP SEQRES 37 B 482 THR LEU GLU GLN VAL ARG ALA HIS ALA ASP ALA ALA ARG SEQRES 38 B 482 LEU HET NMN A 501 22 HET PO4 A 502 5 HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 3 NMN C11 H16 N2 O8 P 1+ FORMUL 4 PO4 O4 P 3- FORMUL 5 HOH *478(H2 O) HELIX 1 AA1 MET A 1 ASP A 5 5 5 HELIX 2 AA2 ASN A 6 ASN A 10 5 5 HELIX 3 AA3 ASP A 12 SER A 17 1 6 HELIX 4 AA4 HIS A 18 TYR A 22 5 5 HELIX 5 AA5 GLY A 47 ILE A 56 1 10 HELIX 6 AA6 THR A 61 GLY A 76 1 16 HELIX 7 AA7 ASN A 80 LEU A 91 1 12 HELIX 8 AA8 TRP A 126 LEU A 131 1 6 HELIX 9 AA9 LEU A 131 ARG A 137 1 7 HELIX 10 AB1 VAL A 138 SER A 163 1 26 HELIX 11 AB2 ASP A 165 LEU A 170 1 6 HELIX 12 AB3 GLY A 178 GLY A 181 5 4 HELIX 13 AB4 SER A 184 VAL A 197 1 14 HELIX 14 AB5 THR A 204 TYR A 215 1 12 HELIX 15 AB6 GLU A 228 SER A 234 1 7 HELIX 16 AB7 TRP A 235 GLU A 238 5 4 HELIX 17 AB8 ARG A 239 ALA A 252 1 14 HELIX 18 AB9 ASP A 263 GLU A 273 1 11 HELIX 19 AC1 GLY A 276 GLY A 287 1 12 HELIX 20 AC2 ASP A 298 GLY A 315 1 18 HELIX 21 AC3 ASN A 338 ALA A 352 1 15 HELIX 22 AC4 ALA A 355 ASP A 357 5 3 HELIX 23 AC5 GLY A 364 GLN A 369 1 6 HELIX 24 AC6 ASP A 428 VAL A 430 5 3 HELIX 25 AC7 THR A 455 ALA A 466 1 12 HELIX 26 AC8 MET B 1 ASP B 5 5 5 HELIX 27 AC9 ASN B 6 ASN B 10 5 5 HELIX 28 AD1 ASP B 12 TYR B 22 5 11 HELIX 29 AD2 GLY B 47 ILE B 56 1 10 HELIX 30 AD3 THR B 61 GLY B 76 1 16 HELIX 31 AD4 ASN B 80 LEU B 91 1 12 HELIX 32 AD5 TRP B 126 LEU B 131 1 6 HELIX 33 AD6 LEU B 131 ARG B 137 1 7 HELIX 34 AD7 VAL B 138 SER B 163 1 26 HELIX 35 AD8 ASP B 165 LEU B 170 1 6 HELIX 36 AD9 GLY B 178 VAL B 182 5 5 HELIX 37 AE1 SER B 184 VAL B 197 1 14 HELIX 38 AE2 THR B 204 TYR B 215 1 12 HELIX 39 AE3 ASP B 263 GLU B 273 1 11 HELIX 40 AE4 HIS B 274 GLY B 287 1 14 HELIX 41 AE5 ASP B 298 GLY B 315 1 18 HELIX 42 AE6 ASN B 338 ALA B 352 1 15 HELIX 43 AE7 ALA B 355 ASP B 357 5 3 HELIX 44 AE8 GLY B 364 GLN B 369 1 6 HELIX 45 AE9 ASP B 428 HIS B 433 1 6 HELIX 46 AF1 THR B 455 ALA B 466 1 12 SHEET 1 AA1 7 ALA A 390 ASP A 393 0 SHEET 2 AA1 7 PHE A 378 VAL A 387 -1 N VAL A 387 O ALA A 390 SHEET 3 AA1 7 THR A 26 SER A 35 -1 N ASP A 27 O ARG A 386 SHEET 4 AA1 7 MET A 115 SER A 119 -1 O ILE A 117 N PHE A 31 SHEET 5 AA1 7 ILE A 97 ALA A 101 -1 N ARG A 98 O GLU A 118 SHEET 6 AA1 7 VAL A 442 GLU A 446 -1 O TRP A 445 N ILE A 99 SHEET 7 AA1 7 GLN A 449 MET A 450 -1 O GLN A 449 N GLU A 446 SHEET 1 AA2 2 GLN A 42 ALA A 44 0 SHEET 2 AA2 2 VAL A 107 PRO A 109 -1 O VAL A 108 N THR A 43 SHEET 1 AA3 5 LEU A 174 ASP A 176 0 SHEET 2 AA3 5 VAL A 359 MET A 363 1 O PHE A 361 N HIS A 175 SHEET 3 AA3 5 VAL A 329 GLN A 333 1 N GLN A 333 O GLY A 362 SHEET 4 AA3 5 THR A 289 PRO A 294 1 N ILE A 292 O ARG A 330 SHEET 5 AA3 5 ILE A 257 SER A 262 1 N VAL A 258 O VAL A 291 SHEET 1 AA4 2 HIS A 316 VAL A 318 0 SHEET 2 AA4 2 LYS A 324 LEU A 326 -1 O VAL A 325 N GLN A 317 SHEET 1 AA5 3 TYR A 422 LEU A 426 0 SHEET 2 AA5 3 LEU A 411 ASP A 416 -1 N LEU A 414 O ARG A 423 SHEET 3 AA5 3 SER A 437 ASP A 439 -1 O ASP A 438 N ARG A 415 SHEET 1 AA6 7 ALA B 390 ASP B 393 0 SHEET 2 AA6 7 PHE B 378 VAL B 387 -1 N VAL B 387 O ALA B 390 SHEET 3 AA6 7 THR B 26 SER B 35 -1 N ASP B 27 O ARG B 386 SHEET 4 AA6 7 MET B 115 SER B 119 -1 O ILE B 117 N PHE B 31 SHEET 5 AA6 7 ILE B 97 ALA B 101 -1 N ARG B 100 O THR B 116 SHEET 6 AA6 7 VAL B 442 GLU B 446 -1 O TRP B 445 N ILE B 99 SHEET 7 AA6 7 GLN B 449 MET B 450 -1 O GLN B 449 N GLU B 446 SHEET 1 AA7 2 GLN B 42 ALA B 44 0 SHEET 2 AA7 2 VAL B 107 PRO B 109 -1 O VAL B 108 N THR B 43 SHEET 1 AA8 6 LEU B 174 ASP B 176 0 SHEET 2 AA8 6 VAL B 359 MET B 363 1 O PHE B 361 N HIS B 175 SHEET 3 AA8 6 VAL B 329 GLN B 333 1 N GLN B 333 O ALA B 360 SHEET 4 AA8 6 THR B 289 PRO B 294 1 N ILE B 292 O ARG B 330 SHEET 5 AA8 6 ILE B 257 SER B 262 1 N VAL B 258 O VAL B 291 SHEET 6 AA8 6 ALA B 226 ALA B 227 1 N ALA B 227 O ALA B 259 SHEET 1 AA9 2 HIS B 316 VAL B 318 0 SHEET 2 AA9 2 LYS B 324 LEU B 326 -1 O VAL B 325 N GLN B 317 SHEET 1 AB1 3 TYR B 422 LEU B 426 0 SHEET 2 AB1 3 LEU B 411 ASP B 416 -1 N LEU B 414 O ARG B 423 SHEET 3 AB1 3 SER B 437 ASP B 439 -1 O ASP B 438 N ARG B 415 CRYST1 115.740 115.740 318.110 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008640 0.004988 0.000000 0.00000 SCALE2 0.000000 0.009977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003144 0.00000