data_7YR8 # _entry.id 7YR8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YR8 pdb_00007yr8 10.2210/pdb7yr8/pdb WWPDB D_1300031481 ? ? EMDB EMD-34049 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-04-19 2 'Structure model' 1 1 2023-05-17 3 'Structure model' 1 2 2023-05-24 4 'Structure model' 1 3 2024-07-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' em_3d_fitting_list 8 4 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_citation.page_first' 7 3 'Structure model' '_citation.page_last' 8 3 'Structure model' '_citation_author.identifier_ORCID' 9 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 10 4 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YR8 _pdbx_database_status.recvd_initial_deposition_date 2022-08-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex' _pdbx_database_related.db_id EMD-34049 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email noda.takeshi.6e@kyoto-u.ac.jp _pdbx_contact_author.name_first Takeshi _pdbx_contact_author.name_last Noda _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0658-4663 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hu, S.F.' 1 0000-0001-5671-8319 'Fujita-Fujiharu, Y.' 2 0000-0002-2411-5473 'Sugita, Y.' 3 0000-0001-6861-4840 'Wendt, L.' 4 0000-0002-0390-5820 'Muramoto, Y.' 5 0000-0002-8706-3113 'Nakano, M.' 6 0000-0003-4247-9008 'Hoenen, T.' 7 0000-0002-5829-6305 'Noda, T.' 8 0000-0002-0658-4663 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Pnas Nexus' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2752-6542 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 2 _citation.language ? _citation.page_first pgad120 _citation.page_last pgad120 _citation.title 'Cryoelectron microscopic structure of the nucleoprotein-RNA complex of the European filovirus, Lloviu virus.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/pnasnexus/pgad120 _citation.pdbx_database_id_PubMed 37124400 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hu, S.' 1 0000-0001-5671-8319 primary 'Fujita-Fujiharu, Y.' 2 0000-0002-2411-5473 primary 'Sugita, Y.' 3 0000-0001-6861-4840 primary 'Wendt, L.' 4 0000-0002-0390-5820 primary 'Muramoto, Y.' 5 0000-0002-8706-3113 primary 'Nakano, M.' 6 0000-0003-4247-9008 primary 'Hoenen, T.' 7 0000-0002-5829-6305 primary 'Noda, T.' 8 0000-0002-0658-4663 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Nucleoprotein 43197.594 1 ? ? ? ? 2 polymer syn ;RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') ; 1792.037 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ELHGILSLGLNVDHTIVRKKSIPLFEIGNSDQVCNWIIQIIEAGVDLQEVADSFLTMLCVNHAYQGDPNLFLESPAAHYL KGHGIHFEIQHRDNVDHITDLLGVGSRDKSLRKTLSALEFEPGGTTTAGMFLSFASLFLPKLVVGERACLEKVQRQIQIH AEQGLIQYPTQWQSVGHMMVVFRLIRVNFVLKFLLVHQGMHMMAGHDANDAIIANSISQTRFSGLLIVKTVLEHILQKTE AGVQLHPLARTSKVKGELLAFKSALEALASHREYAPFARLLNLSGVNNLEHGLYPQLSAIALGVATAHGSTLAGVNVSEQ YQQLREAATEAEKQLQQHSEMRELETLGLDEQERKILATFHSRKNEINIQQTSSILAIRKERLRKLT ; ;ELHGILSLGLNVDHTIVRKKSIPLFEIGNSDQVCNWIIQIIEAGVDLQEVADSFLTMLCVNHAYQGDPNLFLESPAAHYL KGHGIHFEIQHRDNVDHITDLLGVGSRDKSLRKTLSALEFEPGGTTTAGMFLSFASLFLPKLVVGERACLEKVQRQIQIH AEQGLIQYPTQWQSVGHMMVVFRLIRVNFVLKFLLVHQGMHMMAGHDANDAIIANSISQTRFSGLLIVKTVLEHILQKTE AGVQLHPLARTSKVKGELLAFKSALEALASHREYAPFARLLNLSGVNNLEHGLYPQLSAIALGVATAHGSTLAGVNVSEQ YQQLREAATEAEKQLQQHSEMRELETLGLDEQERKILATFHSRKNEINIQQTSSILAIRKERLRKLT ; A ? 2 polyribonucleotide no no UUUUUU UUUUUU R ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LEU n 1 3 HIS n 1 4 GLY n 1 5 ILE n 1 6 LEU n 1 7 SER n 1 8 LEU n 1 9 GLY n 1 10 LEU n 1 11 ASN n 1 12 VAL n 1 13 ASP n 1 14 HIS n 1 15 THR n 1 16 ILE n 1 17 VAL n 1 18 ARG n 1 19 LYS n 1 20 LYS n 1 21 SER n 1 22 ILE n 1 23 PRO n 1 24 LEU n 1 25 PHE n 1 26 GLU n 1 27 ILE n 1 28 GLY n 1 29 ASN n 1 30 SER n 1 31 ASP n 1 32 GLN n 1 33 VAL n 1 34 CYS n 1 35 ASN n 1 36 TRP n 1 37 ILE n 1 38 ILE n 1 39 GLN n 1 40 ILE n 1 41 ILE n 1 42 GLU n 1 43 ALA n 1 44 GLY n 1 45 VAL n 1 46 ASP n 1 47 LEU n 1 48 GLN n 1 49 GLU n 1 50 VAL n 1 51 ALA n 1 52 ASP n 1 53 SER n 1 54 PHE n 1 55 LEU n 1 56 THR n 1 57 MET n 1 58 LEU n 1 59 CYS n 1 60 VAL n 1 61 ASN n 1 62 HIS n 1 63 ALA n 1 64 TYR n 1 65 GLN n 1 66 GLY n 1 67 ASP n 1 68 PRO n 1 69 ASN n 1 70 LEU n 1 71 PHE n 1 72 LEU n 1 73 GLU n 1 74 SER n 1 75 PRO n 1 76 ALA n 1 77 ALA n 1 78 HIS n 1 79 TYR n 1 80 LEU n 1 81 LYS n 1 82 GLY n 1 83 HIS n 1 84 GLY n 1 85 ILE n 1 86 HIS n 1 87 PHE n 1 88 GLU n 1 89 ILE n 1 90 GLN n 1 91 HIS n 1 92 ARG n 1 93 ASP n 1 94 ASN n 1 95 VAL n 1 96 ASP n 1 97 HIS n 1 98 ILE n 1 99 THR n 1 100 ASP n 1 101 LEU n 1 102 LEU n 1 103 GLY n 1 104 VAL n 1 105 GLY n 1 106 SER n 1 107 ARG n 1 108 ASP n 1 109 LYS n 1 110 SER n 1 111 LEU n 1 112 ARG n 1 113 LYS n 1 114 THR n 1 115 LEU n 1 116 SER n 1 117 ALA n 1 118 LEU n 1 119 GLU n 1 120 PHE n 1 121 GLU n 1 122 PRO n 1 123 GLY n 1 124 GLY n 1 125 THR n 1 126 THR n 1 127 THR n 1 128 ALA n 1 129 GLY n 1 130 MET n 1 131 PHE n 1 132 LEU n 1 133 SER n 1 134 PHE n 1 135 ALA n 1 136 SER n 1 137 LEU n 1 138 PHE n 1 139 LEU n 1 140 PRO n 1 141 LYS n 1 142 LEU n 1 143 VAL n 1 144 VAL n 1 145 GLY n 1 146 GLU n 1 147 ARG n 1 148 ALA n 1 149 CYS n 1 150 LEU n 1 151 GLU n 1 152 LYS n 1 153 VAL n 1 154 GLN n 1 155 ARG n 1 156 GLN n 1 157 ILE n 1 158 GLN n 1 159 ILE n 1 160 HIS n 1 161 ALA n 1 162 GLU n 1 163 GLN n 1 164 GLY n 1 165 LEU n 1 166 ILE n 1 167 GLN n 1 168 TYR n 1 169 PRO n 1 170 THR n 1 171 GLN n 1 172 TRP n 1 173 GLN n 1 174 SER n 1 175 VAL n 1 176 GLY n 1 177 HIS n 1 178 MET n 1 179 MET n 1 180 VAL n 1 181 VAL n 1 182 PHE n 1 183 ARG n 1 184 LEU n 1 185 ILE n 1 186 ARG n 1 187 VAL n 1 188 ASN n 1 189 PHE n 1 190 VAL n 1 191 LEU n 1 192 LYS n 1 193 PHE n 1 194 LEU n 1 195 LEU n 1 196 VAL n 1 197 HIS n 1 198 GLN n 1 199 GLY n 1 200 MET n 1 201 HIS n 1 202 MET n 1 203 MET n 1 204 ALA n 1 205 GLY n 1 206 HIS n 1 207 ASP n 1 208 ALA n 1 209 ASN n 1 210 ASP n 1 211 ALA n 1 212 ILE n 1 213 ILE n 1 214 ALA n 1 215 ASN n 1 216 SER n 1 217 ILE n 1 218 SER n 1 219 GLN n 1 220 THR n 1 221 ARG n 1 222 PHE n 1 223 SER n 1 224 GLY n 1 225 LEU n 1 226 LEU n 1 227 ILE n 1 228 VAL n 1 229 LYS n 1 230 THR n 1 231 VAL n 1 232 LEU n 1 233 GLU n 1 234 HIS n 1 235 ILE n 1 236 LEU n 1 237 GLN n 1 238 LYS n 1 239 THR n 1 240 GLU n 1 241 ALA n 1 242 GLY n 1 243 VAL n 1 244 GLN n 1 245 LEU n 1 246 HIS n 1 247 PRO n 1 248 LEU n 1 249 ALA n 1 250 ARG n 1 251 THR n 1 252 SER n 1 253 LYS n 1 254 VAL n 1 255 LYS n 1 256 GLY n 1 257 GLU n 1 258 LEU n 1 259 LEU n 1 260 ALA n 1 261 PHE n 1 262 LYS n 1 263 SER n 1 264 ALA n 1 265 LEU n 1 266 GLU n 1 267 ALA n 1 268 LEU n 1 269 ALA n 1 270 SER n 1 271 HIS n 1 272 ARG n 1 273 GLU n 1 274 TYR n 1 275 ALA n 1 276 PRO n 1 277 PHE n 1 278 ALA n 1 279 ARG n 1 280 LEU n 1 281 LEU n 1 282 ASN n 1 283 LEU n 1 284 SER n 1 285 GLY n 1 286 VAL n 1 287 ASN n 1 288 ASN n 1 289 LEU n 1 290 GLU n 1 291 HIS n 1 292 GLY n 1 293 LEU n 1 294 TYR n 1 295 PRO n 1 296 GLN n 1 297 LEU n 1 298 SER n 1 299 ALA n 1 300 ILE n 1 301 ALA n 1 302 LEU n 1 303 GLY n 1 304 VAL n 1 305 ALA n 1 306 THR n 1 307 ALA n 1 308 HIS n 1 309 GLY n 1 310 SER n 1 311 THR n 1 312 LEU n 1 313 ALA n 1 314 GLY n 1 315 VAL n 1 316 ASN n 1 317 VAL n 1 318 SER n 1 319 GLU n 1 320 GLN n 1 321 TYR n 1 322 GLN n 1 323 GLN n 1 324 LEU n 1 325 ARG n 1 326 GLU n 1 327 ALA n 1 328 ALA n 1 329 THR n 1 330 GLU n 1 331 ALA n 1 332 GLU n 1 333 LYS n 1 334 GLN n 1 335 LEU n 1 336 GLN n 1 337 GLN n 1 338 HIS n 1 339 SER n 1 340 GLU n 1 341 MET n 1 342 ARG n 1 343 GLU n 1 344 LEU n 1 345 GLU n 1 346 THR n 1 347 LEU n 1 348 GLY n 1 349 LEU n 1 350 ASP n 1 351 GLU n 1 352 GLN n 1 353 GLU n 1 354 ARG n 1 355 LYS n 1 356 ILE n 1 357 LEU n 1 358 ALA n 1 359 THR n 1 360 PHE n 1 361 HIS n 1 362 SER n 1 363 ARG n 1 364 LYS n 1 365 ASN n 1 366 GLU n 1 367 ILE n 1 368 ASN n 1 369 ILE n 1 370 GLN n 1 371 GLN n 1 372 THR n 1 373 SER n 1 374 SER n 1 375 ILE n 1 376 LEU n 1 377 ALA n 1 378 ILE n 1 379 ARG n 1 380 LYS n 1 381 GLU n 1 382 ARG n 1 383 LEU n 1 384 ARG n 1 385 LYS n 1 386 LEU n 1 387 THR n 2 1 U n 2 2 U n 2 3 U n 2 4 U n 2 5 U n 2 6 U n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 387 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'isolate Bat/Spain/Asturias-Bat86/2003' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Lloviu cuevavirus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1513237 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 9606 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue 'Kidney(Embryonic)' _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HEK293T _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'Adhension Cell Culture' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 20 20 GLU GLU A . n A 1 2 LEU 2 21 21 LEU LEU A . n A 1 3 HIS 3 22 22 HIS HIS A . n A 1 4 GLY 4 23 23 GLY GLY A . n A 1 5 ILE 5 24 24 ILE ILE A . n A 1 6 LEU 6 25 25 LEU LEU A . n A 1 7 SER 7 26 26 SER SER A . n A 1 8 LEU 8 27 27 LEU LEU A . n A 1 9 GLY 9 28 28 GLY GLY A . n A 1 10 LEU 10 29 29 LEU LEU A . n A 1 11 ASN 11 30 30 ASN ASN A . n A 1 12 VAL 12 31 31 VAL VAL A . n A 1 13 ASP 13 32 32 ASP ASP A . n A 1 14 HIS 14 33 33 HIS HIS A . n A 1 15 THR 15 34 34 THR THR A . n A 1 16 ILE 16 35 35 ILE ILE A . n A 1 17 VAL 17 36 36 VAL VAL A . n A 1 18 ARG 18 37 37 ARG ARG A . n A 1 19 LYS 19 38 38 LYS LYS A . n A 1 20 LYS 20 39 39 LYS LYS A . n A 1 21 SER 21 40 40 SER SER A . n A 1 22 ILE 22 41 41 ILE ILE A . n A 1 23 PRO 23 42 42 PRO PRO A . n A 1 24 LEU 24 43 43 LEU LEU A . n A 1 25 PHE 25 44 44 PHE PHE A . n A 1 26 GLU 26 45 45 GLU GLU A . n A 1 27 ILE 27 46 46 ILE ILE A . n A 1 28 GLY 28 47 47 GLY GLY A . n A 1 29 ASN 29 48 48 ASN ASN A . n A 1 30 SER 30 49 49 SER SER A . n A 1 31 ASP 31 50 50 ASP ASP A . n A 1 32 GLN 32 51 51 GLN GLN A . n A 1 33 VAL 33 52 52 VAL VAL A . n A 1 34 CYS 34 53 53 CYS CYS A . n A 1 35 ASN 35 54 54 ASN ASN A . n A 1 36 TRP 36 55 55 TRP TRP A . n A 1 37 ILE 37 56 56 ILE ILE A . n A 1 38 ILE 38 57 57 ILE ILE A . n A 1 39 GLN 39 58 58 GLN GLN A . n A 1 40 ILE 40 59 59 ILE ILE A . n A 1 41 ILE 41 60 60 ILE ILE A . n A 1 42 GLU 42 61 61 GLU GLU A . n A 1 43 ALA 43 62 62 ALA ALA A . n A 1 44 GLY 44 63 63 GLY GLY A . n A 1 45 VAL 45 64 64 VAL VAL A . n A 1 46 ASP 46 65 65 ASP ASP A . n A 1 47 LEU 47 66 66 LEU LEU A . n A 1 48 GLN 48 67 67 GLN GLN A . n A 1 49 GLU 49 68 68 GLU GLU A . n A 1 50 VAL 50 69 69 VAL VAL A . n A 1 51 ALA 51 70 70 ALA ALA A . n A 1 52 ASP 52 71 71 ASP ASP A . n A 1 53 SER 53 72 72 SER SER A . n A 1 54 PHE 54 73 73 PHE PHE A . n A 1 55 LEU 55 74 74 LEU LEU A . n A 1 56 THR 56 75 75 THR THR A . n A 1 57 MET 57 76 76 MET MET A . n A 1 58 LEU 58 77 77 LEU LEU A . n A 1 59 CYS 59 78 78 CYS CYS A . n A 1 60 VAL 60 79 79 VAL VAL A . n A 1 61 ASN 61 80 80 ASN ASN A . n A 1 62 HIS 62 81 81 HIS HIS A . n A 1 63 ALA 63 82 82 ALA ALA A . n A 1 64 TYR 64 83 83 TYR TYR A . n A 1 65 GLN 65 84 84 GLN GLN A . n A 1 66 GLY 66 85 85 GLY GLY A . n A 1 67 ASP 67 86 86 ASP ASP A . n A 1 68 PRO 68 87 87 PRO PRO A . n A 1 69 ASN 69 88 88 ASN ASN A . n A 1 70 LEU 70 89 89 LEU LEU A . n A 1 71 PHE 71 90 90 PHE PHE A . n A 1 72 LEU 72 91 91 LEU LEU A . n A 1 73 GLU 73 92 92 GLU GLU A . n A 1 74 SER 74 93 93 SER SER A . n A 1 75 PRO 75 94 94 PRO PRO A . n A 1 76 ALA 76 95 95 ALA ALA A . n A 1 77 ALA 77 96 96 ALA ALA A . n A 1 78 HIS 78 97 97 HIS HIS A . n A 1 79 TYR 79 98 98 TYR TYR A . n A 1 80 LEU 80 99 99 LEU LEU A . n A 1 81 LYS 81 100 100 LYS LYS A . n A 1 82 GLY 82 101 101 GLY GLY A . n A 1 83 HIS 83 102 102 HIS HIS A . n A 1 84 GLY 84 103 103 GLY GLY A . n A 1 85 ILE 85 104 104 ILE ILE A . n A 1 86 HIS 86 105 105 HIS HIS A . n A 1 87 PHE 87 106 106 PHE PHE A . n A 1 88 GLU 88 107 107 GLU GLU A . n A 1 89 ILE 89 108 108 ILE ILE A . n A 1 90 GLN 90 109 109 GLN GLN A . n A 1 91 HIS 91 110 110 HIS HIS A . n A 1 92 ARG 92 111 111 ARG ARG A . n A 1 93 ASP 93 112 112 ASP ASP A . n A 1 94 ASN 94 113 113 ASN ASN A . n A 1 95 VAL 95 114 114 VAL VAL A . n A 1 96 ASP 96 115 115 ASP ASP A . n A 1 97 HIS 97 116 116 HIS HIS A . n A 1 98 ILE 98 117 117 ILE ILE A . n A 1 99 THR 99 118 118 THR THR A . n A 1 100 ASP 100 119 119 ASP ASP A . n A 1 101 LEU 101 120 120 LEU LEU A . n A 1 102 LEU 102 121 121 LEU LEU A . n A 1 103 GLY 103 122 122 GLY GLY A . n A 1 104 VAL 104 123 123 VAL VAL A . n A 1 105 GLY 105 124 124 GLY GLY A . n A 1 106 SER 106 125 125 SER SER A . n A 1 107 ARG 107 126 126 ARG ARG A . n A 1 108 ASP 108 127 127 ASP ASP A . n A 1 109 LYS 109 128 128 LYS LYS A . n A 1 110 SER 110 129 129 SER SER A . n A 1 111 LEU 111 130 130 LEU LEU A . n A 1 112 ARG 112 131 131 ARG ARG A . n A 1 113 LYS 113 132 132 LYS LYS A . n A 1 114 THR 114 133 133 THR THR A . n A 1 115 LEU 115 134 134 LEU LEU A . n A 1 116 SER 116 135 135 SER SER A . n A 1 117 ALA 117 136 136 ALA ALA A . n A 1 118 LEU 118 137 137 LEU LEU A . n A 1 119 GLU 119 138 138 GLU GLU A . n A 1 120 PHE 120 139 139 PHE PHE A . n A 1 121 GLU 121 140 140 GLU GLU A . n A 1 122 PRO 122 141 141 PRO PRO A . n A 1 123 GLY 123 142 142 GLY GLY A . n A 1 124 GLY 124 143 143 GLY GLY A . n A 1 125 THR 125 144 144 THR THR A . n A 1 126 THR 126 145 145 THR THR A . n A 1 127 THR 127 146 146 THR THR A . n A 1 128 ALA 128 147 147 ALA ALA A . n A 1 129 GLY 129 148 148 GLY GLY A . n A 1 130 MET 130 149 149 MET MET A . n A 1 131 PHE 131 150 150 PHE PHE A . n A 1 132 LEU 132 151 151 LEU LEU A . n A 1 133 SER 133 152 152 SER SER A . n A 1 134 PHE 134 153 153 PHE PHE A . n A 1 135 ALA 135 154 154 ALA ALA A . n A 1 136 SER 136 155 155 SER SER A . n A 1 137 LEU 137 156 156 LEU LEU A . n A 1 138 PHE 138 157 157 PHE PHE A . n A 1 139 LEU 139 158 158 LEU LEU A . n A 1 140 PRO 140 159 159 PRO PRO A . n A 1 141 LYS 141 160 160 LYS LYS A . n A 1 142 LEU 142 161 161 LEU LEU A . n A 1 143 VAL 143 162 162 VAL VAL A . n A 1 144 VAL 144 163 163 VAL VAL A . n A 1 145 GLY 145 164 164 GLY GLY A . n A 1 146 GLU 146 165 165 GLU GLU A . n A 1 147 ARG 147 166 166 ARG ARG A . n A 1 148 ALA 148 167 167 ALA ALA A . n A 1 149 CYS 149 168 168 CYS CYS A . n A 1 150 LEU 150 169 169 LEU LEU A . n A 1 151 GLU 151 170 170 GLU GLU A . n A 1 152 LYS 152 171 171 LYS LYS A . n A 1 153 VAL 153 172 172 VAL VAL A . n A 1 154 GLN 154 173 173 GLN GLN A . n A 1 155 ARG 155 174 174 ARG ARG A . n A 1 156 GLN 156 175 175 GLN GLN A . n A 1 157 ILE 157 176 176 ILE ILE A . n A 1 158 GLN 158 177 177 GLN GLN A . n A 1 159 ILE 159 178 178 ILE ILE A . n A 1 160 HIS 160 179 179 HIS HIS A . n A 1 161 ALA 161 180 180 ALA ALA A . n A 1 162 GLU 162 181 181 GLU GLU A . n A 1 163 GLN 163 182 182 GLN GLN A . n A 1 164 GLY 164 183 183 GLY GLY A . n A 1 165 LEU 165 184 184 LEU LEU A . n A 1 166 ILE 166 185 185 ILE ILE A . n A 1 167 GLN 167 186 186 GLN GLN A . n A 1 168 TYR 168 187 187 TYR TYR A . n A 1 169 PRO 169 188 188 PRO PRO A . n A 1 170 THR 170 189 189 THR THR A . n A 1 171 GLN 171 190 190 GLN GLN A . n A 1 172 TRP 172 191 191 TRP TRP A . n A 1 173 GLN 173 192 192 GLN GLN A . n A 1 174 SER 174 193 193 SER SER A . n A 1 175 VAL 175 194 194 VAL VAL A . n A 1 176 GLY 176 195 195 GLY GLY A . n A 1 177 HIS 177 196 196 HIS HIS A . n A 1 178 MET 178 197 197 MET MET A . n A 1 179 MET 179 198 198 MET MET A . n A 1 180 VAL 180 199 199 VAL VAL A . n A 1 181 VAL 181 200 200 VAL VAL A . n A 1 182 PHE 182 201 201 PHE PHE A . n A 1 183 ARG 183 202 202 ARG ARG A . n A 1 184 LEU 184 203 203 LEU LEU A . n A 1 185 ILE 185 204 204 ILE ILE A . n A 1 186 ARG 186 205 205 ARG ARG A . n A 1 187 VAL 187 206 206 VAL VAL A . n A 1 188 ASN 188 207 207 ASN ASN A . n A 1 189 PHE 189 208 208 PHE PHE A . n A 1 190 VAL 190 209 209 VAL VAL A . n A 1 191 LEU 191 210 210 LEU LEU A . n A 1 192 LYS 192 211 211 LYS LYS A . n A 1 193 PHE 193 212 212 PHE PHE A . n A 1 194 LEU 194 213 213 LEU LEU A . n A 1 195 LEU 195 214 214 LEU LEU A . n A 1 196 VAL 196 215 215 VAL VAL A . n A 1 197 HIS 197 216 216 HIS HIS A . n A 1 198 GLN 198 217 217 GLN GLN A . n A 1 199 GLY 199 218 218 GLY GLY A . n A 1 200 MET 200 219 219 MET MET A . n A 1 201 HIS 201 220 220 HIS HIS A . n A 1 202 MET 202 221 221 MET MET A . n A 1 203 MET 203 222 222 MET MET A . n A 1 204 ALA 204 223 223 ALA ALA A . n A 1 205 GLY 205 224 224 GLY GLY A . n A 1 206 HIS 206 225 225 HIS HIS A . n A 1 207 ASP 207 226 226 ASP ASP A . n A 1 208 ALA 208 227 227 ALA ALA A . n A 1 209 ASN 209 228 228 ASN ASN A . n A 1 210 ASP 210 229 229 ASP ASP A . n A 1 211 ALA 211 230 230 ALA ALA A . n A 1 212 ILE 212 231 231 ILE ILE A . n A 1 213 ILE 213 232 232 ILE ILE A . n A 1 214 ALA 214 233 233 ALA ALA A . n A 1 215 ASN 215 234 234 ASN ASN A . n A 1 216 SER 216 235 235 SER SER A . n A 1 217 ILE 217 236 236 ILE ILE A . n A 1 218 SER 218 237 237 SER SER A . n A 1 219 GLN 219 238 238 GLN GLN A . n A 1 220 THR 220 239 239 THR THR A . n A 1 221 ARG 221 240 240 ARG ARG A . n A 1 222 PHE 222 241 241 PHE PHE A . n A 1 223 SER 223 242 242 SER SER A . n A 1 224 GLY 224 243 243 GLY GLY A . n A 1 225 LEU 225 244 244 LEU LEU A . n A 1 226 LEU 226 245 245 LEU LEU A . n A 1 227 ILE 227 246 246 ILE ILE A . n A 1 228 VAL 228 247 247 VAL VAL A . n A 1 229 LYS 229 248 248 LYS LYS A . n A 1 230 THR 230 249 249 THR THR A . n A 1 231 VAL 231 250 250 VAL VAL A . n A 1 232 LEU 232 251 251 LEU LEU A . n A 1 233 GLU 233 252 252 GLU GLU A . n A 1 234 HIS 234 253 253 HIS HIS A . n A 1 235 ILE 235 254 254 ILE ILE A . n A 1 236 LEU 236 255 255 LEU LEU A . n A 1 237 GLN 237 256 256 GLN GLN A . n A 1 238 LYS 238 257 257 LYS LYS A . n A 1 239 THR 239 258 258 THR THR A . n A 1 240 GLU 240 259 259 GLU GLU A . n A 1 241 ALA 241 260 260 ALA ALA A . n A 1 242 GLY 242 261 261 GLY GLY A . n A 1 243 VAL 243 262 262 VAL VAL A . n A 1 244 GLN 244 263 263 GLN GLN A . n A 1 245 LEU 245 264 264 LEU LEU A . n A 1 246 HIS 246 265 265 HIS HIS A . n A 1 247 PRO 247 266 266 PRO PRO A . n A 1 248 LEU 248 267 267 LEU LEU A . n A 1 249 ALA 249 268 268 ALA ALA A . n A 1 250 ARG 250 269 269 ARG ARG A . n A 1 251 THR 251 270 270 THR THR A . n A 1 252 SER 252 271 271 SER SER A . n A 1 253 LYS 253 272 272 LYS LYS A . n A 1 254 VAL 254 273 273 VAL VAL A . n A 1 255 LYS 255 274 274 LYS LYS A . n A 1 256 GLY 256 275 275 GLY GLY A . n A 1 257 GLU 257 276 276 GLU GLU A . n A 1 258 LEU 258 277 277 LEU LEU A . n A 1 259 LEU 259 278 278 LEU LEU A . n A 1 260 ALA 260 279 279 ALA ALA A . n A 1 261 PHE 261 280 280 PHE PHE A . n A 1 262 LYS 262 281 281 LYS LYS A . n A 1 263 SER 263 282 282 SER SER A . n A 1 264 ALA 264 283 283 ALA ALA A . n A 1 265 LEU 265 284 284 LEU LEU A . n A 1 266 GLU 266 285 285 GLU GLU A . n A 1 267 ALA 267 286 286 ALA ALA A . n A 1 268 LEU 268 287 287 LEU LEU A . n A 1 269 ALA 269 288 288 ALA ALA A . n A 1 270 SER 270 289 289 SER SER A . n A 1 271 HIS 271 290 290 HIS HIS A . n A 1 272 ARG 272 291 291 ARG ARG A . n A 1 273 GLU 273 292 292 GLU GLU A . n A 1 274 TYR 274 293 293 TYR TYR A . n A 1 275 ALA 275 294 294 ALA ALA A . n A 1 276 PRO 276 295 295 PRO PRO A . n A 1 277 PHE 277 296 296 PHE PHE A . n A 1 278 ALA 278 297 297 ALA ALA A . n A 1 279 ARG 279 298 298 ARG ARG A . n A 1 280 LEU 280 299 299 LEU LEU A . n A 1 281 LEU 281 300 300 LEU LEU A . n A 1 282 ASN 282 301 301 ASN ASN A . n A 1 283 LEU 283 302 302 LEU LEU A . n A 1 284 SER 284 303 303 SER SER A . n A 1 285 GLY 285 304 304 GLY GLY A . n A 1 286 VAL 286 305 305 VAL VAL A . n A 1 287 ASN 287 306 306 ASN ASN A . n A 1 288 ASN 288 307 307 ASN ASN A . n A 1 289 LEU 289 308 308 LEU LEU A . n A 1 290 GLU 290 309 309 GLU GLU A . n A 1 291 HIS 291 310 310 HIS HIS A . n A 1 292 GLY 292 311 311 GLY GLY A . n A 1 293 LEU 293 312 312 LEU LEU A . n A 1 294 TYR 294 313 313 TYR TYR A . n A 1 295 PRO 295 314 314 PRO PRO A . n A 1 296 GLN 296 315 315 GLN GLN A . n A 1 297 LEU 297 316 316 LEU LEU A . n A 1 298 SER 298 317 317 SER SER A . n A 1 299 ALA 299 318 318 ALA ALA A . n A 1 300 ILE 300 319 319 ILE ILE A . n A 1 301 ALA 301 320 320 ALA ALA A . n A 1 302 LEU 302 321 321 LEU LEU A . n A 1 303 GLY 303 322 322 GLY GLY A . n A 1 304 VAL 304 323 323 VAL VAL A . n A 1 305 ALA 305 324 324 ALA ALA A . n A 1 306 THR 306 325 325 THR THR A . n A 1 307 ALA 307 326 326 ALA ALA A . n A 1 308 HIS 308 327 327 HIS HIS A . n A 1 309 GLY 309 328 328 GLY GLY A . n A 1 310 SER 310 329 329 SER SER A . n A 1 311 THR 311 330 330 THR THR A . n A 1 312 LEU 312 331 331 LEU LEU A . n A 1 313 ALA 313 332 332 ALA ALA A . n A 1 314 GLY 314 333 333 GLY GLY A . n A 1 315 VAL 315 334 334 VAL VAL A . n A 1 316 ASN 316 335 335 ASN ASN A . n A 1 317 VAL 317 336 336 VAL VAL A . n A 1 318 SER 318 337 337 SER SER A . n A 1 319 GLU 319 338 338 GLU GLU A . n A 1 320 GLN 320 339 339 GLN GLN A . n A 1 321 TYR 321 340 340 TYR TYR A . n A 1 322 GLN 322 341 341 GLN GLN A . n A 1 323 GLN 323 342 342 GLN GLN A . n A 1 324 LEU 324 343 343 LEU LEU A . n A 1 325 ARG 325 344 344 ARG ARG A . n A 1 326 GLU 326 345 345 GLU GLU A . n A 1 327 ALA 327 346 346 ALA ALA A . n A 1 328 ALA 328 347 347 ALA ALA A . n A 1 329 THR 329 348 348 THR THR A . n A 1 330 GLU 330 349 349 GLU GLU A . n A 1 331 ALA 331 350 350 ALA ALA A . n A 1 332 GLU 332 351 351 GLU GLU A . n A 1 333 LYS 333 352 352 LYS LYS A . n A 1 334 GLN 334 353 353 GLN GLN A . n A 1 335 LEU 335 354 354 LEU LEU A . n A 1 336 GLN 336 355 355 GLN GLN A . n A 1 337 GLN 337 356 356 GLN GLN A . n A 1 338 HIS 338 357 357 HIS HIS A . n A 1 339 SER 339 358 358 SER SER A . n A 1 340 GLU 340 359 359 GLU GLU A . n A 1 341 MET 341 360 360 MET MET A . n A 1 342 ARG 342 361 361 ARG ARG A . n A 1 343 GLU 343 362 362 GLU GLU A . n A 1 344 LEU 344 363 363 LEU LEU A . n A 1 345 GLU 345 364 364 GLU GLU A . n A 1 346 THR 346 365 365 THR THR A . n A 1 347 LEU 347 366 366 LEU LEU A . n A 1 348 GLY 348 367 367 GLY GLY A . n A 1 349 LEU 349 368 368 LEU LEU A . n A 1 350 ASP 350 369 369 ASP ASP A . n A 1 351 GLU 351 370 370 GLU GLU A . n A 1 352 GLN 352 371 371 GLN GLN A . n A 1 353 GLU 353 372 372 GLU GLU A . n A 1 354 ARG 354 373 373 ARG ARG A . n A 1 355 LYS 355 374 374 LYS LYS A . n A 1 356 ILE 356 375 375 ILE ILE A . n A 1 357 LEU 357 376 376 LEU LEU A . n A 1 358 ALA 358 377 377 ALA ALA A . n A 1 359 THR 359 378 378 THR THR A . n A 1 360 PHE 360 379 379 PHE PHE A . n A 1 361 HIS 361 380 380 HIS HIS A . n A 1 362 SER 362 381 381 SER SER A . n A 1 363 ARG 363 382 382 ARG ARG A . n A 1 364 LYS 364 383 383 LYS LYS A . n A 1 365 ASN 365 384 384 ASN ASN A . n A 1 366 GLU 366 385 385 GLU GLU A . n A 1 367 ILE 367 386 386 ILE ILE A . n A 1 368 ASN 368 387 387 ASN ASN A . n A 1 369 ILE 369 388 388 ILE ILE A . n A 1 370 GLN 370 389 389 GLN GLN A . n A 1 371 GLN 371 390 390 GLN GLN A . n A 1 372 THR 372 391 391 THR THR A . n A 1 373 SER 373 392 392 SER SER A . n A 1 374 SER 374 393 393 SER SER A . n A 1 375 ILE 375 394 394 ILE ILE A . n A 1 376 LEU 376 395 395 LEU LEU A . n A 1 377 ALA 377 396 396 ALA ALA A . n A 1 378 ILE 378 397 397 ILE ILE A . n A 1 379 ARG 379 398 398 ARG ARG A . n A 1 380 LYS 380 399 399 LYS LYS A . n A 1 381 GLU 381 400 400 GLU GLU A . n A 1 382 ARG 382 401 401 ARG ARG A . n A 1 383 LEU 383 402 402 LEU LEU A . n A 1 384 ARG 384 403 403 ARG ARG A . n A 1 385 LYS 385 404 404 LYS LYS A . n A 1 386 LEU 386 405 405 LEU LEU A . n A 1 387 THR 387 406 406 THR THR A . n B 2 1 U 1 1 1 U U R . n B 2 2 U 2 2 2 U U R . n B 2 3 U 3 3 3 U U R . n B 2 4 U 4 4 4 U U R . n B 2 5 U 5 5 5 U U R . n B 2 6 U 6 6 6 U U R . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YR8 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7YR8 _struct.title 'Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YR8 _struct_keywords.text 'nucleoprotein, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP G8EFI1_LLOVA G8EFI1 ? 1 ;ELHGILSLGLNVDHTIVRKKSIPLFEIGNSDQVCNWIIQIIEAGVDLQDVADSFLTMLCVNHAYQGDPNLFLESPAAHYL KGHGIHFEIQHRDNVDHITDLLGVGSRDKSLRKTLSALEFEPDGSTTAGMFLSFASLFLPKLVVGERACLEKVQRQIQIH AEQGLIQYPTQWQSVGHMMVVFRLIRVNFVLKFLLVHQGMHMMAGHDANDAIIANSISQTRFSGLLIVKTVLEHILQKTE AGVQLHPLARTSKVKGELLAFKSALEALASHREYAPFARLLNLSGVNNLEHGLYPQLSAIALGVATAHGSTLAGVNVSEQ YQQLREAATEAEKQLQQHSEMRELETLGLDEQERKILATFHSRKNEINIQQTSSILAIRKERLRKLT ; 20 2 PDB 7YR8 7YR8 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7YR8 A 1 ? 387 ? G8EFI1 20 ? 406 ? 20 406 2 2 7YR8 R 1 ? 6 ? 7YR8 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7YR8 GLU A 49 ? UNP G8EFI1 ASP 68 conflict 68 1 1 7YR8 GLY A 123 ? UNP G8EFI1 ASP 142 conflict 142 2 1 7YR8 THR A 125 ? UNP G8EFI1 SER 144 conflict 144 3 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 180-meric 180 2 'helical asymmetric unit' ? dimeric 2 3 'helical asymmetric unit, std helical frame' ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-90)' A,B 2 46 A,B 3 H A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? 0.76548321 0.64345586 0.00000000 0.00000 -0.64345586 0.76548321 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -142.20000 2 'helical symmetry operation' ? ? 0.57128670 0.82075058 0.00000000 0.00000 -0.82075058 0.57128670 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -139.04000 3 'helical symmetry operation' ? ? 0.33758817 0.94129391 0.00000000 0.00000 -0.94129391 0.33758817 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -135.88000 4 'helical symmetry operation' ? ? 0.08054686 0.99675082 0.00000000 0.00000 -0.99675082 0.08054686 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -132.72000 5 'helical symmetry operation' ? ? -0.18206391 0.98328670 0.00000000 0.00000 -0.98328670 -0.18206391 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -129.56000 6 'helical symmetry operation' ? ? -0.43208575 0.90183253 0.00000000 0.00000 -0.90183253 -0.43208575 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -126.40000 7 'helical symmetry operation' ? ? -0.65223071 0.75802051 0.00000000 0.00000 -0.75802051 -0.65223071 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -123.24000 8 'helical symmetry operation' ? ? -0.82727673 0.56179464 0.00000000 0.00000 -0.56179464 -0.82727673 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -120.08000 9 'helical symmetry operation' ? ? -0.94512011 0.32672308 0.00000000 0.00000 -0.32672308 -0.94512011 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -116.92000 10 'helical symmetry operation' ? ? -0.99761251 0.06906003 0.00000000 0.00000 -0.06906003 -0.99761251 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -113.76000 11 'helical symmetry operation' ? ? -0.98112428 -0.19337823 0.00000000 0.00000 0.19337823 -0.98112428 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -110.60000 12 'helical symmetry operation' ? ? -0.89679553 -0.44244522 0.00000000 0.00000 0.44244522 -0.89679553 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -107.44000 13 'helical symmetry operation' ? ? -0.75045723 -0.66091902 0.00000000 0.00000 0.66091902 -0.75045723 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -104.28000 14 'helical symmetry operation' ? ? -0.55222803 -0.83369311 0.00000000 0.00000 0.83369311 -0.55222803 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -101.12000 15 'helical symmetry operation' ? ? -0.31581464 -0.94882091 0.00000000 0.00000 0.94882091 -0.31581464 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -97.96000 16 'helical symmetry operation' ? ? -0.05756403 -0.99834182 0.00000000 0.00000 0.99834182 -0.05756403 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -94.80000 17 'helical symmetry operation' ? ? 0.20466689 -0.97883168 0.00000000 0.00000 0.97883168 0.20466689 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -91.64000 18 'helical symmetry operation' ? ? 0.45274598 -0.89163955 0.00000000 0.00000 0.89163955 0.45274598 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -88.48000 19 'helical symmetry operation' ? ? 0.66951962 -0.74279437 0.00000000 0.00000 0.74279437 0.66951962 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -85.32000 20 'helical symmetry operation' ? ? 0.83999887 -0.54258815 0.00000000 0.00000 0.54258815 0.83999887 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -82.16000 21 'helical symmetry operation' ? ? 0.95239580 -0.30486430 0.00000000 0.00000 0.30486430 0.95239580 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -79.00000 22 'helical symmetry operation' ? ? 0.99893866 -0.04606039 0.00000000 0.00000 0.04606039 0.99893866 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -75.84000 23 'helical symmetry operation' ? ? 0.97640920 0.21592840 0.00000000 0.00000 -0.21592840 0.97640920 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -72.68000 24 'helical symmetry operation' ? ? 0.88636525 0.46298666 0.00000000 0.00000 -0.46298666 0.88636525 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -69.52000 25 'helical symmetry operation' ? ? 0.73503295 0.67803139 0.00000000 0.00000 -0.67803139 0.73503295 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -66.36000 26 'helical symmetry operation' ? ? 0.53287628 0.84619317 0.00000000 0.00000 -0.84619317 0.53287628 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -63.20000 27 'helical symmetry operation' ? ? 0.29387350 0.95584432 0.00000000 0.00000 -0.95584432 0.29387350 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -60.04000 28 'helical symmetry operation' ? ? 0.03455064 0.99940295 0.00000000 0.00000 -0.99940295 0.03455064 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -56.88000 29 'helical symmetry operation' ? ? -0.22716125 0.97385716 0.00000000 0.00000 -0.97385716 -0.22716125 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -53.72000 30 'helical symmetry operation' ? ? -0.47316592 0.88097333 0.00000000 0.00000 -0.88097333 -0.47316592 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -50.56000 31 'helical symmetry operation' ? ? -0.68645319 0.72717399 0.00000000 0.00000 -0.72717399 -0.68645319 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -47.40000 32 'helical symmetry operation' ? ? -0.85227518 0.52309369 0.00000000 0.00000 -0.52309369 -0.85227518 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -44.24000 33 'helical symmetry operation' ? ? -0.95916601 0.28284371 0.00000000 0.00000 -0.28284371 -0.95916601 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -41.08000 34 'helical symmetry operation' ? ? -0.99973463 0.02303631 0.00000000 0.00000 -0.02303631 -0.99973463 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -37.92000 35 'helical symmetry operation' ? ? -0.97117590 -0.23836396 0.00000000 0.00000 0.23836396 -0.97117590 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -34.76000 36 'helical symmetry operation' ? ? -0.87546453 -0.48328238 0.00000000 0.00000 0.48328238 -0.87546453 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -31.60000 37 'helical symmetry operation' ? ? -0.71921855 -0.69478391 0.00000000 0.00000 0.69478391 -0.71921855 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -28.44000 38 'helical symmetry operation' ? ? -0.51324170 -0.85824411 0.00000000 0.00000 0.85824411 -0.51324170 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -25.28000 39 'helical symmetry operation' ? ? -0.27177639 -0.96236043 0.00000000 0.00000 0.96236043 -0.27177639 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.12000 40 'helical symmetry operation' ? ? -0.01151892 -0.99993366 0.00000000 0.00000 0.99993366 -0.01151892 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -18.96000 41 'helical symmetry operation' ? ? 0.24953504 -0.96836577 0.00000000 0.00000 0.96836577 0.24953504 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.80000 42 'helical symmetry operation' ? ? 0.49333472 -0.86983955 0.00000000 0.00000 0.86983955 0.49333472 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.64000 43 'helical symmetry operation' ? ? 0.70302243 -0.71116767 0.00000000 0.00000 0.71116767 0.70302243 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.48000 44 'helical symmetry operation' ? ? 0.86409916 -0.50332160 0.00000000 0.00000 0.50332160 0.86409916 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -6.32000 45 'helical symmetry operation' ? ? 0.96542715 -0.26067301 0.00000000 0.00000 0.26067301 0.96542715 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -3.16000 46 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 47 'helical symmetry operation' ? ? 0.96542715 0.26067301 0.00000000 0.00000 -0.26067301 0.96542715 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 3.16000 48 'helical symmetry operation' ? ? 0.86409916 0.50332160 0.00000000 0.00000 -0.50332160 0.86409916 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 6.32000 49 'helical symmetry operation' ? ? 0.70302243 0.71116767 0.00000000 0.00000 -0.71116767 0.70302243 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.48000 50 'helical symmetry operation' ? ? 0.49333472 0.86983955 0.00000000 0.00000 -0.86983955 0.49333472 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.64000 51 'helical symmetry operation' ? ? 0.24953504 0.96836577 0.00000000 0.00000 -0.96836577 0.24953504 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.80000 52 'helical symmetry operation' ? ? -0.01151892 0.99993366 0.00000000 0.00000 -0.99993366 -0.01151892 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 18.96000 53 'helical symmetry operation' ? ? -0.27177639 0.96236043 0.00000000 0.00000 -0.96236043 -0.27177639 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.12000 54 'helical symmetry operation' ? ? -0.51324170 0.85824411 0.00000000 0.00000 -0.85824411 -0.51324170 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 25.28000 55 'helical symmetry operation' ? ? -0.71921855 0.69478391 0.00000000 0.00000 -0.69478391 -0.71921855 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 28.44000 56 'helical symmetry operation' ? ? -0.87546453 0.48328238 0.00000000 0.00000 -0.48328238 -0.87546453 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 31.60000 57 'helical symmetry operation' ? ? -0.97117590 0.23836396 0.00000000 0.00000 -0.23836396 -0.97117590 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 34.76000 58 'helical symmetry operation' ? ? -0.99973463 -0.02303631 0.00000000 0.00000 0.02303631 -0.99973463 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 37.92000 59 'helical symmetry operation' ? ? -0.95916601 -0.28284371 0.00000000 0.00000 0.28284371 -0.95916601 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 41.08000 60 'helical symmetry operation' ? ? -0.85227518 -0.52309369 0.00000000 0.00000 0.52309369 -0.85227518 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 44.24000 61 'helical symmetry operation' ? ? -0.68645319 -0.72717399 0.00000000 0.00000 0.72717399 -0.68645319 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 47.40000 62 'helical symmetry operation' ? ? -0.47316592 -0.88097333 0.00000000 0.00000 0.88097333 -0.47316592 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 50.56000 63 'helical symmetry operation' ? ? -0.22716125 -0.97385716 0.00000000 0.00000 0.97385716 -0.22716125 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 53.72000 64 'helical symmetry operation' ? ? 0.03455064 -0.99940295 0.00000000 0.00000 0.99940295 0.03455064 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 56.88000 65 'helical symmetry operation' ? ? 0.29387350 -0.95584432 0.00000000 0.00000 0.95584432 0.29387350 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 60.04000 66 'helical symmetry operation' ? ? 0.53287628 -0.84619317 0.00000000 0.00000 0.84619317 0.53287628 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 63.20000 67 'helical symmetry operation' ? ? 0.73503295 -0.67803139 0.00000000 0.00000 0.67803139 0.73503295 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 66.36000 68 'helical symmetry operation' ? ? 0.88636525 -0.46298666 0.00000000 0.00000 0.46298666 0.88636525 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 69.52000 69 'helical symmetry operation' ? ? 0.97640920 -0.21592840 0.00000000 0.00000 0.21592840 0.97640920 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 72.68000 70 'helical symmetry operation' ? ? 0.99893866 0.04606039 0.00000000 0.00000 -0.04606039 0.99893866 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 75.84000 71 'helical symmetry operation' ? ? 0.95239580 0.30486430 0.00000000 0.00000 -0.30486430 0.95239580 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 79.00000 72 'helical symmetry operation' ? ? 0.83999887 0.54258815 0.00000000 0.00000 -0.54258815 0.83999887 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 82.16000 73 'helical symmetry operation' ? ? 0.66951962 0.74279437 0.00000000 0.00000 -0.74279437 0.66951962 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 85.32000 74 'helical symmetry operation' ? ? 0.45274598 0.89163955 0.00000000 0.00000 -0.89163955 0.45274598 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 88.48000 75 'helical symmetry operation' ? ? 0.20466689 0.97883168 0.00000000 0.00000 -0.97883168 0.20466689 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 91.64000 76 'helical symmetry operation' ? ? -0.05756403 0.99834182 0.00000000 0.00000 -0.99834182 -0.05756403 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 94.80000 77 'helical symmetry operation' ? ? -0.31581464 0.94882091 0.00000000 0.00000 -0.94882091 -0.31581464 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 97.96000 78 'helical symmetry operation' ? ? -0.55222803 0.83369311 0.00000000 0.00000 -0.83369311 -0.55222803 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 101.12000 79 'helical symmetry operation' ? ? -0.75045723 0.66091902 0.00000000 0.00000 -0.66091902 -0.75045723 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 104.28000 80 'helical symmetry operation' ? ? -0.89679553 0.44244522 0.00000000 0.00000 -0.44244522 -0.89679553 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 107.44000 81 'helical symmetry operation' ? ? -0.98112428 0.19337823 0.00000000 0.00000 -0.19337823 -0.98112428 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 110.60000 82 'helical symmetry operation' ? ? -0.99761251 -0.06906003 0.00000000 0.00000 0.06906003 -0.99761251 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 113.76000 83 'helical symmetry operation' ? ? -0.94512011 -0.32672308 0.00000000 0.00000 0.32672308 -0.94512011 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 116.92000 84 'helical symmetry operation' ? ? -0.82727673 -0.56179464 0.00000000 0.00000 0.56179464 -0.82727673 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 120.08000 85 'helical symmetry operation' ? ? -0.65223071 -0.75802051 0.00000000 0.00000 0.75802051 -0.65223071 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 123.24000 86 'helical symmetry operation' ? ? -0.43208575 -0.90183253 0.00000000 0.00000 0.90183253 -0.43208575 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 126.40000 87 'helical symmetry operation' ? ? -0.18206391 -0.98328670 0.00000000 0.00000 0.98328670 -0.18206391 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 129.56000 88 'helical symmetry operation' ? ? 0.08054686 -0.99675082 0.00000000 0.00000 0.99675082 0.08054686 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 132.72000 89 'helical symmetry operation' ? ? 0.33758817 -0.94129391 0.00000000 0.00000 0.94129391 0.33758817 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 135.88000 90 'helical symmetry operation' ? ? 0.57128670 -0.82075058 0.00000000 0.00000 0.82075058 0.57128670 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 139.04000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 1 ? LEU A 8 ? GLU A 20 LEU A 27 5 ? 8 HELX_P HELX_P2 AA2 ASN A 29 ? ALA A 43 ? ASN A 48 ALA A 62 1 ? 15 HELX_P HELX_P3 AA3 VAL A 50 ? GLN A 65 ? VAL A 69 GLN A 84 1 ? 16 HELX_P HELX_P4 AA4 ASP A 67 ? GLU A 73 ? ASP A 86 GLU A 92 1 ? 7 HELX_P HELX_P5 AA5 SER A 74 ? LYS A 81 ? SER A 93 LYS A 100 1 ? 8 HELX_P HELX_P6 AA6 HIS A 97 ? LEU A 101 ? HIS A 116 LEU A 120 5 ? 5 HELX_P HELX_P7 AA7 ARG A 107 ? LEU A 118 ? ARG A 126 LEU A 137 1 ? 12 HELX_P HELX_P8 AA8 THR A 127 ? LEU A 137 ? THR A 146 LEU A 156 1 ? 11 HELX_P HELX_P9 AA9 GLY A 145 ? GLN A 163 ? GLY A 164 GLN A 182 1 ? 19 HELX_P HELX_P10 AB1 SER A 174 ? ASN A 188 ? SER A 193 ASN A 207 1 ? 15 HELX_P HELX_P11 AB2 ASN A 188 ? MET A 202 ? ASN A 207 MET A 221 1 ? 15 HELX_P HELX_P12 AB3 ASP A 207 ? THR A 220 ? ASP A 226 THR A 239 1 ? 14 HELX_P HELX_P13 AB4 LEU A 225 ? HIS A 234 ? LEU A 244 HIS A 253 1 ? 10 HELX_P HELX_P14 AB5 PRO A 247 ? ARG A 250 ? PRO A 266 ARG A 269 5 ? 4 HELX_P HELX_P15 AB6 THR A 251 ? SER A 270 ? THR A 270 SER A 289 1 ? 20 HELX_P HELX_P16 AB7 TYR A 274 ? PRO A 276 ? TYR A 293 PRO A 295 5 ? 3 HELX_P HELX_P17 AB8 PHE A 277 ? ASN A 282 ? PHE A 296 ASN A 301 1 ? 6 HELX_P HELX_P18 AB9 LEU A 283 ? ASN A 287 ? LEU A 302 ASN A 306 5 ? 5 HELX_P HELX_P19 AC1 TYR A 294 ? ALA A 307 ? TYR A 313 ALA A 326 1 ? 14 HELX_P HELX_P20 AC2 THR A 311 ? VAL A 315 ? THR A 330 VAL A 334 5 ? 5 HELX_P HELX_P21 AC3 TYR A 321 ? GLU A 343 ? TYR A 340 GLU A 362 1 ? 23 HELX_P HELX_P22 AC4 ASP A 350 ? THR A 387 ? ASP A 369 THR A 406 1 ? 38 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 20 ? GLU A 26 ? LYS A 39 GLU A 45 AA1 2 ILE A 85 ? HIS A 91 ? ILE A 104 HIS A 110 AA2 1 LEU A 236 ? LYS A 238 ? LEU A 255 LYS A 257 AA2 2 VAL A 243 ? LEU A 245 ? VAL A 262 LEU A 264 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 24 ? N LEU A 43 O GLU A 88 ? O GLU A 107 AA2 1 2 N GLN A 237 ? N GLN A 256 O GLN A 244 ? O GLN A 263 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG1 A THR 258 ? ? O A GLY 261 ? ? 2.13 2 1 O A SER 235 ? ? OG1 A THR 239 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 68 ? ? 70.53 -7.90 2 1 ARG A 126 ? ? 68.07 -0.87 3 1 GLU A 292 ? ? 56.17 5.25 # _pdbx_helical_symmetry.entry_id 7YR8 _pdbx_helical_symmetry.number_of_operations 90 _pdbx_helical_symmetry.rotation_per_n_subunits -15.110000 _pdbx_helical_symmetry.rise_per_n_subunits 3.160000 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 7YR8 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id 7YPW _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 20-406 _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id A _em_3d_fitting_list.chain_residue_range 20-406 _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7YPW _em_3d_fitting_list.initial_refinement_model_id 1 # _em_3d_reconstruction.entry_id 7YR8 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 399761 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Lloviu cuevavirus nucleoprotein (1-450 residues) RNA complex' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_image_scans.entry_id 7YR8 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4096 _em_image_scans.dimension_width 4096 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 7YR8 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 200 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 400 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 150000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50.0 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details JEC-3000FC _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 7YR8 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Apply 1.5 micro litters of sample from each side of the grid and blot for 6 seconds before plugging' # _em_experiment.entry_id 7YR8 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7YR8 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 U OP3 O N N 369 U P P N N 370 U OP1 O N N 371 U OP2 O N N 372 U "O5'" O N N 373 U "C5'" C N N 374 U "C4'" C N R 375 U "O4'" O N N 376 U "C3'" C N S 377 U "O3'" O N N 378 U "C2'" C N R 379 U "O2'" O N N 380 U "C1'" C N R 381 U N1 N N N 382 U C2 C N N 383 U O2 O N N 384 U N3 N N N 385 U C4 C N N 386 U O4 O N N 387 U C5 C N N 388 U C6 C N N 389 U HOP3 H N N 390 U HOP2 H N N 391 U "H5'" H N N 392 U "H5''" H N N 393 U "H4'" H N N 394 U "H3'" H N N 395 U "HO3'" H N N 396 U "H2'" H N N 397 U "HO2'" H N N 398 U "H1'" H N N 399 U H3 H N N 400 U H5 H N N 401 U H6 H N N 402 VAL N N N N 403 VAL CA C N S 404 VAL C C N N 405 VAL O O N N 406 VAL CB C N N 407 VAL CG1 C N N 408 VAL CG2 C N N 409 VAL OXT O N N 410 VAL H H N N 411 VAL H2 H N N 412 VAL HA H N N 413 VAL HB H N N 414 VAL HG11 H N N 415 VAL HG12 H N N 416 VAL HG13 H N N 417 VAL HG21 H N N 418 VAL HG22 H N N 419 VAL HG23 H N N 420 VAL HXT H N N 421 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 U OP3 P sing N N 356 U OP3 HOP3 sing N N 357 U P OP1 doub N N 358 U P OP2 sing N N 359 U P "O5'" sing N N 360 U OP2 HOP2 sing N N 361 U "O5'" "C5'" sing N N 362 U "C5'" "C4'" sing N N 363 U "C5'" "H5'" sing N N 364 U "C5'" "H5''" sing N N 365 U "C4'" "O4'" sing N N 366 U "C4'" "C3'" sing N N 367 U "C4'" "H4'" sing N N 368 U "O4'" "C1'" sing N N 369 U "C3'" "O3'" sing N N 370 U "C3'" "C2'" sing N N 371 U "C3'" "H3'" sing N N 372 U "O3'" "HO3'" sing N N 373 U "C2'" "O2'" sing N N 374 U "C2'" "C1'" sing N N 375 U "C2'" "H2'" sing N N 376 U "O2'" "HO2'" sing N N 377 U "C1'" N1 sing N N 378 U "C1'" "H1'" sing N N 379 U N1 C2 sing N N 380 U N1 C6 sing N N 381 U C2 O2 doub N N 382 U C2 N3 sing N N 383 U N3 C4 sing N N 384 U N3 H3 sing N N 385 U C4 O4 doub N N 386 U C4 C5 sing N N 387 U C5 C6 doub N N 388 U C5 H5 sing N N 389 U C6 H6 sing N N 390 VAL N CA sing N N 391 VAL N H sing N N 392 VAL N H2 sing N N 393 VAL CA C sing N N 394 VAL CA CB sing N N 395 VAL CA HA sing N N 396 VAL C O doub N N 397 VAL C OXT sing N N 398 VAL CB CG1 sing N N 399 VAL CB CG2 sing N N 400 VAL CB HB sing N N 401 VAL CG1 HG11 sing N N 402 VAL CG1 HG12 sing N N 403 VAL CG1 HG13 sing N N 404 VAL CG2 HG21 sing N N 405 VAL CG2 HG22 sing N N 406 VAL CG2 HG23 sing N N 407 VAL OXT HXT sing N N 408 # _em_admin.current_status REL _em_admin.deposition_date 2022-08-09 _em_admin.deposition_site PDBJ _em_admin.entry_id 7YR8 _em_admin.last_update 2024-07-03 _em_admin.map_release_date 2023-04-19 _em_admin.title 'Lloviu cuevavirus nucleoprotein(1-450 residues)-RNA complex' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM Tris-HCl 1 'Tris(hydroxymethyl)aminomethane' 1 150 mM NaCl 2 'Sodium chloride' 1 25 mM MgCl2 3 'Magnesium chloride' 1 5 mM CaCl2 4 'Calcium chloride' 1 1 mM DTT 5 Dithiothreitol # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1513237 _em_entity_assembly_naturalsource.organism 'Lloviu cuevavirus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 3780 # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 442067 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 3.1 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1.14 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 0.8.9.2 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 3.1 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 3.1 CLASSIFICATION ? 11 1 ? ? RELION 3.1 RECONSTRUCTION ? 12 1 ? ? RELION 3.1 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.18.2 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.3 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 21J12207 1 'Japan Society for the Promotion of Science (JSPS)' Japan 21K07052 2 'Japan Science and Technology' Japan JPMJFR214S 3 'Japan Agency for Medical Research and Development (AMED)' Japan 21wm0325023j0002 4 'Japan Science and Technology' Japan JPMJCR20HA 5 'Japan Agency for Medical Research and Development (AMED)' Japan JP22ama1214032 6 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7YPW # _atom_sites.entry_id 7YR8 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_ #