data_7YRK # _entry.id 7YRK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YRK pdb_00007yrk 10.2210/pdb7yrk/pdb WWPDB D_1300031489 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YRK _pdbx_database_status.recvd_initial_deposition_date 2022-08-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Unno, M.' 1 0000-0002-4975-5696 'Furuya, T.' 2 0000-0001-5044-1486 'Kitanishi, K.' 3 0000-0002-2110-8104 'Akitsu, T.' 4 0000-0003-4410-4912 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Rep' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2045-2322 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 6892 _citation.page_last 6892 _citation.title 'A novel hybrid protein composed of superoxide-dismutase-active Cu(II) complex and lysozyme.' _citation.year 2023 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41598-023-33926-1 _citation.pdbx_database_id_PubMed 37106030 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Furuya, T.' 1 ? primary 'Nakane, D.' 2 ? primary 'Kitanishi, K.' 3 ? primary 'Katsuumi, N.' 4 ? primary 'Tsaturyan, A.' 5 ? primary 'Shcherbakov, I.N.' 6 ? primary 'Unno, M.' 7 ? primary 'Akitsu, T.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7YRK _cell.details ? _cell.formula_units_Z ? _cell.length_a 78.671 _cell.length_a_esd ? _cell.length_b 78.671 _cell.length_b_esd ? _cell.length_c 37.203 _cell.length_c_esd ? _cell.volume 230254.064 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 7YRK _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Lysozyme C' 16257.660 1 3.2.1.17 ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 4 ? ? ? ? 4 non-polymer syn '(6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one' 284.755 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 6 non-polymer syn 'methyl radical' 15.035 1 ? ? ? ? 7 water nat water 18.015 235 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '1,4-beta-N-acetylmuramidase C,Allergen Gal d IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 SER n 1 4 LEU n 1 5 LEU n 1 6 ILE n 1 7 LEU n 1 8 VAL n 1 9 LEU n 1 10 CYS n 1 11 PHE n 1 12 LEU n 1 13 PRO n 1 14 LEU n 1 15 ALA n 1 16 ALA n 1 17 LEU n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 PHE n 1 22 GLY n 1 23 ARG n 1 24 CYS n 1 25 GLU n 1 26 LEU n 1 27 ALA n 1 28 ALA n 1 29 ALA n 1 30 MET n 1 31 LYS n 1 32 ARG n 1 33 HIS n 1 34 GLY n 1 35 LEU n 1 36 ASP n 1 37 ASN n 1 38 TYR n 1 39 ARG n 1 40 GLY n 1 41 TYR n 1 42 SER n 1 43 LEU n 1 44 GLY n 1 45 ASN n 1 46 TRP n 1 47 VAL n 1 48 CYS n 1 49 ALA n 1 50 ALA n 1 51 LYS n 1 52 PHE n 1 53 GLU n 1 54 SER n 1 55 ASN n 1 56 PHE n 1 57 ASN n 1 58 THR n 1 59 GLN n 1 60 ALA n 1 61 THR n 1 62 ASN n 1 63 ARG n 1 64 ASN n 1 65 THR n 1 66 ASP n 1 67 GLY n 1 68 SER n 1 69 THR n 1 70 ASP n 1 71 TYR n 1 72 GLY n 1 73 ILE n 1 74 LEU n 1 75 GLN n 1 76 ILE n 1 77 ASN n 1 78 SER n 1 79 ARG n 1 80 TRP n 1 81 TRP n 1 82 CYS n 1 83 ASN n 1 84 ASP n 1 85 GLY n 1 86 ARG n 1 87 THR n 1 88 PRO n 1 89 GLY n 1 90 SER n 1 91 ARG n 1 92 ASN n 1 93 LEU n 1 94 CYS n 1 95 ASN n 1 96 ILE n 1 97 PRO n 1 98 CYS n 1 99 SER n 1 100 ALA n 1 101 LEU n 1 102 LEU n 1 103 SER n 1 104 SER n 1 105 ASP n 1 106 ILE n 1 107 THR n 1 108 ALA n 1 109 SER n 1 110 VAL n 1 111 ASN n 1 112 CYS n 1 113 ALA n 1 114 LYS n 1 115 LYS n 1 116 ILE n 1 117 VAL n 1 118 SER n 1 119 ASP n 1 120 GLY n 1 121 ASN n 1 122 GLY n 1 123 MET n 1 124 ASN n 1 125 ALA n 1 126 TRP n 1 127 VAL n 1 128 ALA n 1 129 TRP n 1 130 ARG n 1 131 ASN n 1 132 ARG n 1 133 CYS n 1 134 LYS n 1 135 GLY n 1 136 THR n 1 137 ASP n 1 138 VAL n 1 139 GLN n 1 140 ALA n 1 141 TRP n 1 142 ILE n 1 143 ARG n 1 144 GLY n 1 145 CYS n 1 146 ARG n 1 147 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 147 _entity_src_nat.common_name chicken _entity_src_nat.pdbx_organism_scientific 'Gallus gallus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9031 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MRSLLILVLCFLPLAALGKVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRW WCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7YRK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 147 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -17 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 74C non-polymer . 'methyl radical' ? 'C H3' 15.035 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 JI6 non-polymer . '(6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one' ? 'C11 H11 Cu N O4' 284.755 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YRK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.77 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 30.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M of acetic acid-sodium acetate buffer (pH 4.7) including 2-6 % (m/v) of NaCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-03-05 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-17A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL-17A _diffrn_source.pdbx_synchrotron_site 'Photon Factory' # _reflns.B_iso_Wilson_estimate 8.26 _reflns.entry_id 7YRK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.92 _reflns.d_resolution_low 35.18 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 78748 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.6 _reflns.pdbx_Rmerge_I_obs 0.084 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 17.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? _reflns.pdbx_CC_split_method ? # _reflns_shell.d_res_high 0.92 _reflns_shell.d_res_low 0.94 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2783 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.568 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 13.05 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7YRK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.92 _refine.ls_d_res_low 35.18 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 78679 _refine.ls_number_reflns_R_free 7868 _refine.ls_number_reflns_R_work 70811 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.09 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1142 _refine.ls_R_factor_R_free 0.1284 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1126 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5LYT _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 9.2891 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0597 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 0.92 _refine_hist.d_res_low 35.18 _refine_hist.number_atoms_solvent 235 _refine_hist.number_atoms_total 1269 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0107 ? 1189 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.1519 ? 1634 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0979 ? 170 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0134 ? 215 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 6.4501 ? 190 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 0.92 0.93 . . 165 1479 62.16 . . . 0.2330 . 0.2310 . . . . . . . . . . . 'X-RAY DIFFRACTION' 0.93 0.95 . . 241 2171 91.64 . . . 0.1976 . 0.1684 . . . . . . . . . . . 'X-RAY DIFFRACTION' 0.95 0.96 . . 252 2275 95.04 . . . 0.1551 . 0.1508 . . . . . . . . . . . 'X-RAY DIFFRACTION' 0.96 0.97 . . 255 2294 97.29 . . . 0.1556 . 0.1338 . . . . . . . . . . . 'X-RAY DIFFRACTION' 0.97 0.98 . . 255 2299 97.56 . . . 0.1324 . 0.1257 . . . . . . . . . . . 'X-RAY DIFFRACTION' 0.98 0.99 . . 266 2385 100.00 . . . 0.1601 . 0.1429 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.00 1.01 . . 261 2350 99.54 . . . 0.1229 . 0.1073 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.01 1.02 . . 264 2376 100.00 . . . 0.1243 . 0.0968 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.02 1.04 . . 265 2388 99.85 . . . 0.1303 . 0.1091 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.04 1.06 . . 265 2381 100.00 . . . 0.1205 . 0.0994 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.06 1.08 . . 263 2368 99.92 . . . 0.1019 . 0.0942 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.08 1.10 . . 267 2405 100.00 . . . 0.0947 . 0.0918 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.10 1.12 . . 264 2379 100.00 . . . 0.1086 . 0.0911 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.12 1.14 . . 264 2373 100.00 . . . 0.1186 . 0.0998 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.14 1.16 . . 267 2399 100.00 . . . 0.0923 . 0.0921 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.16 1.19 . . 266 2394 100.00 . . . 0.0938 . 0.0882 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.19 1.22 . . 263 2362 100.00 . . . 0.1030 . 0.0850 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.22 1.25 . . 266 2396 99.92 . . . 0.1007 . 0.0864 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.25 1.29 . . 267 2421 99.96 . . . 0.1006 . 0.0904 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.29 1.33 . . 266 2395 99.96 . . . 0.1122 . 0.0898 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.33 1.38 . . 269 2414 99.96 . . . 0.1186 . 0.0969 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.38 1.43 . . 266 2394 100.00 . . . 0.1111 . 0.0932 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.44 1.50 . . 268 2413 99.96 . . . 0.1039 . 0.0912 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.50 1.58 . . 268 2408 100.00 . . . 0.0928 . 0.0934 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.58 1.68 . . 269 2430 100.00 . . . 0.1123 . 0.0971 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.68 1.81 . . 270 2426 100.00 . . . 0.1293 . 0.1103 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.81 1.99 . . 273 2456 100.00 . . . 0.1230 . 0.1111 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.99 2.28 . . 273 2458 99.93 . . . 0.1348 . 0.1147 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.28 2.87 . . 278 2500 100.00 . . . 0.1471 . 0.1254 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.87 35.18 . . 292 2622 99.52 . . . 0.1587 . 0.1414 . . . . . . . . . . . # _struct.entry_id 7YRK _struct.title 'Crystal structure of the hen egg lysozyme-2-oxidobenzylidene-threoninato-copper (II) complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YRK _struct_keywords.text 'complex, enzyme, lysozyme, activity, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 2 ? I N N 5 ? J N N 5 ? K N N 5 ? L N N 6 ? M N N 7 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 22 ? HIS A 33 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 AA2 ASN A 37 ? TYR A 41 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 AA3 SER A 42 ? ASN A 55 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 AA4 PRO A 97 ? SER A 103 ? PRO A 79 SER A 85 5 ? 7 HELX_P HELX_P5 AA5 ILE A 106 ? SER A 118 ? ILE A 88 SER A 100 1 ? 13 HELX_P HELX_P6 AA6 ASN A 121 ? ALA A 125 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 AA7 TRP A 126 ? CYS A 133 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 AA8 ASP A 137 ? ARG A 143 ? ASP A 119 ARG A 125 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 145 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 133 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.059 ? ? disulf3 disulf ? ? A CYS 82 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.053 ? ? disulf4 disulf ? ? A CYS 94 SG ? ? ? 1_555 A CYS 112 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.039 ? ? covale1 covale none ? A ASN 62 ND2 A ? ? 1_555 L 74C . C A ? A ASN 44 A 74C 211 1_555 ? ? ? ? ? ? ? 1.256 ? ? covale2 covale none ? A ASN 62 ND2 B ? ? 1_555 L 74C . C B ? A ASN 44 A 74C 211 1_555 ? ? ? ? ? ? ? 1.316 ? ? covale3 covale none ? A ASN 62 ND2 C ? ? 1_555 L 74C . C C ? A ASN 44 A 74C 211 1_555 ? ? ? ? ? ? ? 1.292 ? ? metalc1 metalc ? ? A HIS 33 NE2 ? ? ? 1_555 D JI6 . CU ? ? A HIS 15 A JI6 203 1_555 ? ? ? ? ? ? ? 1.981 ? ? metalc2 metalc ? ? A GLU 53 O ? ? ? 1_555 J NA . NA ? ? A GLU 35 A NA 209 1_555 ? ? ? ? ? ? ? 3.097 ? ? metalc3 metalc ? ? A THR 61 OG1 ? ? ? 1_555 I NA . NA ? ? A THR 43 A NA 208 1_555 ? ? ? ? ? ? ? 2.509 ? ? metalc4 metalc ? ? A THR 61 OG1 ? ? ? 1_555 I NA . NA ? ? A THR 43 A NA 208 7_556 ? ? ? ? ? ? ? 2.518 ? ? metalc5 metalc ? ? A ASN 62 OD1 A ? ? 1_555 K NA . NA ? ? A ASN 44 A NA 210 1_555 ? ? ? ? ? ? ? 2.531 ? ? metalc6 metalc ? ? A ASN 62 OD1 B ? ? 1_555 K NA . NA ? ? A ASN 44 A NA 210 1_555 ? ? ? ? ? ? ? 2.278 ? ? metalc7 metalc ? ? A THR 107 OG1 ? ? ? 1_555 D JI6 . CU ? ? A THR 89 A JI6 203 1_555 ? ? ? ? ? ? ? 2.495 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 61 ? ARG A 63 ? THR A 43 ARG A 45 AA1 2 THR A 69 ? TYR A 71 ? THR A 51 TYR A 53 AA1 3 ILE A 76 ? ASN A 77 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASN A 62 ? N ASN A 44 O ASP A 70 ? O ASP A 52 AA1 2 3 N TYR A 71 ? N TYR A 53 O ILE A 76 ? O ILE A 58 # _atom_sites.entry_id 7YRK _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012711 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012711 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026880 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 2.51340 1.74867 1.72398 ? 31.80534 0.44561 10.58317 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 ? ? 1.04373 23.83732 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CU ? ? 15.94305 9.65533 3.33083 ? 4.82663 0.30655 35.45999 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.53795 0.34799 0.11320 ? 10.08003 29.74760 2.57510 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 2.99955 2.25584 1.72788 ? 23.27268 7.45433 0.31622 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 6.63511 3.01293 1.30238 ? 5.54423 0.54580 90.85902 ? 0.0 ;3-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -17 ? ? ? A . n A 1 2 ARG 2 -16 ? ? ? A . n A 1 3 SER 3 -15 ? ? ? A . n A 1 4 LEU 4 -14 ? ? ? A . n A 1 5 LEU 5 -13 ? ? ? A . n A 1 6 ILE 6 -12 ? ? ? A . n A 1 7 LEU 7 -11 ? ? ? A . n A 1 8 VAL 8 -10 ? ? ? A . n A 1 9 LEU 9 -9 ? ? ? A . n A 1 10 CYS 10 -8 ? ? ? A . n A 1 11 PHE 11 -7 ? ? ? A . n A 1 12 LEU 12 -6 ? ? ? A . n A 1 13 PRO 13 -5 ? ? ? A . n A 1 14 LEU 14 -4 ? ? ? A . n A 1 15 ALA 15 -3 ? ? ? A . n A 1 16 ALA 16 -2 ? ? ? A . n A 1 17 LEU 17 -1 ? ? ? A . n A 1 18 GLY 18 0 ? ? ? A . n A 1 19 LYS 19 1 1 LYS LYS A . n A 1 20 VAL 20 2 2 VAL VAL A . n A 1 21 PHE 21 3 3 PHE PHE A . n A 1 22 GLY 22 4 4 GLY GLY A . n A 1 23 ARG 23 5 5 ARG ARG A . n A 1 24 CYS 24 6 6 CYS CYS A . n A 1 25 GLU 25 7 7 GLU GLU A . n A 1 26 LEU 26 8 8 LEU LEU A . n A 1 27 ALA 27 9 9 ALA ALA A . n A 1 28 ALA 28 10 10 ALA ALA A . n A 1 29 ALA 29 11 11 ALA ALA A . n A 1 30 MET 30 12 12 MET MET A . n A 1 31 LYS 31 13 13 LYS LYS A . n A 1 32 ARG 32 14 14 ARG ARG A . n A 1 33 HIS 33 15 15 HIS HIS A . n A 1 34 GLY 34 16 16 GLY GLY A . n A 1 35 LEU 35 17 17 LEU LEU A . n A 1 36 ASP 36 18 18 ASP ASP A . n A 1 37 ASN 37 19 19 ASN ASN A . n A 1 38 TYR 38 20 20 TYR TYR A . n A 1 39 ARG 39 21 21 ARG ARG A . n A 1 40 GLY 40 22 22 GLY GLY A . n A 1 41 TYR 41 23 23 TYR TYR A . n A 1 42 SER 42 24 24 SER SER A . n A 1 43 LEU 43 25 25 LEU LEU A . n A 1 44 GLY 44 26 26 GLY GLY A . n A 1 45 ASN 45 27 27 ASN ASN A . n A 1 46 TRP 46 28 28 TRP TRP A . n A 1 47 VAL 47 29 29 VAL VAL A . n A 1 48 CYS 48 30 30 CYS CYS A . n A 1 49 ALA 49 31 31 ALA ALA A . n A 1 50 ALA 50 32 32 ALA ALA A . n A 1 51 LYS 51 33 33 LYS LYS A . n A 1 52 PHE 52 34 34 PHE PHE A . n A 1 53 GLU 53 35 35 GLU GLU A . n A 1 54 SER 54 36 36 SER SER A . n A 1 55 ASN 55 37 37 ASN ASN A . n A 1 56 PHE 56 38 38 PHE PHE A . n A 1 57 ASN 57 39 39 ASN ASN A . n A 1 58 THR 58 40 40 THR THR A . n A 1 59 GLN 59 41 41 GLN GLN A . n A 1 60 ALA 60 42 42 ALA ALA A . n A 1 61 THR 61 43 43 THR THR A . n A 1 62 ASN 62 44 44 ASN ASN A . n A 1 63 ARG 63 45 45 ARG ARG A . n A 1 64 ASN 64 46 46 ASN ASN A . n A 1 65 THR 65 47 47 THR THR A . n A 1 66 ASP 66 48 48 ASP ASP A . n A 1 67 GLY 67 49 49 GLY GLY A . n A 1 68 SER 68 50 50 SER SER A . n A 1 69 THR 69 51 51 THR THR A . n A 1 70 ASP 70 52 52 ASP ASP A . n A 1 71 TYR 71 53 53 TYR TYR A . n A 1 72 GLY 72 54 54 GLY GLY A . n A 1 73 ILE 73 55 55 ILE ILE A . n A 1 74 LEU 74 56 56 LEU LEU A . n A 1 75 GLN 75 57 57 GLN GLN A . n A 1 76 ILE 76 58 58 ILE ILE A . n A 1 77 ASN 77 59 59 ASN ASN A . n A 1 78 SER 78 60 60 SER SER A . n A 1 79 ARG 79 61 61 ARG ARG A . n A 1 80 TRP 80 62 62 TRP TRP A . n A 1 81 TRP 81 63 63 TRP TRP A . n A 1 82 CYS 82 64 64 CYS CYS A . n A 1 83 ASN 83 65 65 ASN ASN A . n A 1 84 ASP 84 66 66 ASP ASP A . n A 1 85 GLY 85 67 67 GLY GLY A . n A 1 86 ARG 86 68 68 ARG ARG A . n A 1 87 THR 87 69 69 THR THR A . n A 1 88 PRO 88 70 70 PRO PRO A . n A 1 89 GLY 89 71 71 GLY GLY A . n A 1 90 SER 90 72 72 SER SER A . n A 1 91 ARG 91 73 73 ARG ARG A . n A 1 92 ASN 92 74 74 ASN ASN A . n A 1 93 LEU 93 75 75 LEU LEU A . n A 1 94 CYS 94 76 76 CYS CYS A . n A 1 95 ASN 95 77 77 ASN ASN A . n A 1 96 ILE 96 78 78 ILE ILE A . n A 1 97 PRO 97 79 79 PRO PRO A . n A 1 98 CYS 98 80 80 CYS CYS A . n A 1 99 SER 99 81 81 SER SER A . n A 1 100 ALA 100 82 82 ALA ALA A . n A 1 101 LEU 101 83 83 LEU LEU A . n A 1 102 LEU 102 84 84 LEU LEU A . n A 1 103 SER 103 85 85 SER SER A . n A 1 104 SER 104 86 86 SER SER A . n A 1 105 ASP 105 87 87 ASP ASP A . n A 1 106 ILE 106 88 88 ILE ILE A . n A 1 107 THR 107 89 89 THR THR A . n A 1 108 ALA 108 90 90 ALA ALA A . n A 1 109 SER 109 91 91 SER SER A . n A 1 110 VAL 110 92 92 VAL VAL A . n A 1 111 ASN 111 93 93 ASN ASN A . n A 1 112 CYS 112 94 94 CYS CYS A . n A 1 113 ALA 113 95 95 ALA ALA A . n A 1 114 LYS 114 96 96 LYS LYS A . n A 1 115 LYS 115 97 97 LYS LYS A . n A 1 116 ILE 116 98 98 ILE ILE A . n A 1 117 VAL 117 99 99 VAL VAL A . n A 1 118 SER 118 100 100 SER SER A . n A 1 119 ASP 119 101 101 ASP ASP A . n A 1 120 GLY 120 102 102 GLY GLY A . n A 1 121 ASN 121 103 103 ASN ASN A . n A 1 122 GLY 122 104 104 GLY GLY A . n A 1 123 MET 123 105 105 MET MET A . n A 1 124 ASN 124 106 106 ASN ASN A . n A 1 125 ALA 125 107 107 ALA ALA A . n A 1 126 TRP 126 108 108 TRP TRP A . n A 1 127 VAL 127 109 109 VAL VAL A . n A 1 128 ALA 128 110 110 ALA ALA A . n A 1 129 TRP 129 111 111 TRP TRP A . n A 1 130 ARG 130 112 112 ARG ARG A . n A 1 131 ASN 131 113 113 ASN ASN A . n A 1 132 ARG 132 114 114 ARG ARG A . n A 1 133 CYS 133 115 115 CYS CYS A . n A 1 134 LYS 134 116 116 LYS LYS A . n A 1 135 GLY 135 117 117 GLY GLY A . n A 1 136 THR 136 118 118 THR THR A . n A 1 137 ASP 137 119 119 ASP ASP A . n A 1 138 VAL 138 120 120 VAL VAL A . n A 1 139 GLN 139 121 121 GLN GLN A . n A 1 140 ALA 140 122 122 ALA ALA A . n A 1 141 TRP 141 123 123 TRP TRP A . n A 1 142 ILE 142 124 124 ILE ILE A . n A 1 143 ARG 143 125 125 ARG ARG A . n A 1 144 GLY 144 126 126 GLY GLY A . n A 1 145 CYS 145 127 127 CYS CYS A . n A 1 146 ARG 146 128 128 ARG ARG A . n A 1 147 LEU 147 129 129 LEU LEU A . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email akitsu2@rs.tus.ac.jp _pdbx_contact_author.name_first Takashiro _pdbx_contact_author.name_last Akitsu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4410-4912 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 201 EDO EDO A . C 3 CL 1 202 1201 CL CL A . D 4 JI6 1 203 1301 JI6 AKT A . E 3 CL 1 204 1501 CL CL A . F 3 CL 1 205 1601 CL CL A . G 3 CL 1 206 1701 CL CL A . H 2 EDO 1 207 202 EDO EDO A . I 5 NA 1 208 3 NA NA A . J 5 NA 1 209 4 NA NA A . K 5 NA 1 210 5 NA NA A . L 6 74C 1 211 1 74C CH3 A . M 7 HOH 1 301 198 HOH HOH A . M 7 HOH 2 302 151 HOH HOH A . M 7 HOH 3 303 207 HOH HOH A . M 7 HOH 4 304 221 HOH HOH A . M 7 HOH 5 305 95 HOH HOH A . M 7 HOH 6 306 202 HOH HOH A . M 7 HOH 7 307 83 HOH HOH A . M 7 HOH 8 308 194 HOH HOH A . M 7 HOH 9 309 189 HOH HOH A . M 7 HOH 10 310 28 HOH HOH A . M 7 HOH 11 311 209 HOH HOH A . M 7 HOH 12 312 199 HOH HOH A . M 7 HOH 13 313 96 HOH HOH A . M 7 HOH 14 314 56 HOH HOH A . M 7 HOH 15 315 166 HOH HOH A . M 7 HOH 16 316 244 HOH HOH A . M 7 HOH 17 317 266 HOH HOH A . M 7 HOH 18 318 90 HOH HOH A . M 7 HOH 19 319 7 HOH HOH A . M 7 HOH 20 320 115 HOH HOH A . M 7 HOH 21 321 105 HOH HOH A . M 7 HOH 22 322 21 HOH HOH A . M 7 HOH 23 323 156 HOH HOH A . M 7 HOH 24 324 178 HOH HOH A . M 7 HOH 25 325 275 HOH HOH A . M 7 HOH 26 326 1 HOH HOH A . M 7 HOH 27 327 11 HOH HOH A . M 7 HOH 28 328 144 HOH HOH A . M 7 HOH 29 329 174 HOH HOH A . M 7 HOH 30 330 171 HOH HOH A . M 7 HOH 31 331 126 HOH HOH A . M 7 HOH 32 332 75 HOH HOH A . M 7 HOH 33 333 53 HOH HOH A . M 7 HOH 34 334 86 HOH HOH A . M 7 HOH 35 335 69 HOH HOH A . M 7 HOH 36 336 17 HOH HOH A . M 7 HOH 37 337 137 HOH HOH A . M 7 HOH 38 338 22 HOH HOH A . M 7 HOH 39 339 32 HOH HOH A . M 7 HOH 40 340 14 HOH HOH A . M 7 HOH 41 341 155 HOH HOH A . M 7 HOH 42 342 44 HOH HOH A . M 7 HOH 43 343 258 HOH HOH A . M 7 HOH 44 344 150 HOH HOH A . M 7 HOH 45 345 193 HOH HOH A . M 7 HOH 46 346 138 HOH HOH A . M 7 HOH 47 347 62 HOH HOH A . M 7 HOH 48 348 60 HOH HOH A . M 7 HOH 49 349 37 HOH HOH A . M 7 HOH 50 350 50 HOH HOH A . M 7 HOH 51 351 67 HOH HOH A . M 7 HOH 52 352 20 HOH HOH A . M 7 HOH 53 353 85 HOH HOH A . M 7 HOH 54 354 13 HOH HOH A . M 7 HOH 55 355 43 HOH HOH A . M 7 HOH 56 356 58 HOH HOH A . M 7 HOH 57 357 35 HOH HOH A . M 7 HOH 58 358 73 HOH HOH A . M 7 HOH 59 359 98 HOH HOH A . M 7 HOH 60 360 2 HOH HOH A . M 7 HOH 61 361 68 HOH HOH A . M 7 HOH 62 362 27 HOH HOH A . M 7 HOH 63 363 55 HOH HOH A . M 7 HOH 64 364 257 HOH HOH A . M 7 HOH 65 365 65 HOH HOH A . M 7 HOH 66 366 97 HOH HOH A . M 7 HOH 67 367 63 HOH HOH A . M 7 HOH 68 368 74 HOH HOH A . M 7 HOH 69 369 212 HOH HOH A . M 7 HOH 70 370 139 HOH HOH A . M 7 HOH 71 371 8 HOH HOH A . M 7 HOH 72 372 41 HOH HOH A . M 7 HOH 73 373 31 HOH HOH A . M 7 HOH 74 374 79 HOH HOH A . M 7 HOH 75 375 182 HOH HOH A . M 7 HOH 76 376 6 HOH HOH A . M 7 HOH 77 377 23 HOH HOH A . M 7 HOH 78 378 52 HOH HOH A . M 7 HOH 79 379 87 HOH HOH A . M 7 HOH 80 380 39 HOH HOH A . M 7 HOH 81 381 109 HOH HOH A . M 7 HOH 82 382 147 HOH HOH A . M 7 HOH 83 383 66 HOH HOH A . M 7 HOH 84 384 36 HOH HOH A . M 7 HOH 85 385 51 HOH HOH A . M 7 HOH 86 386 111 HOH HOH A . M 7 HOH 87 387 33 HOH HOH A . M 7 HOH 88 388 42 HOH HOH A . M 7 HOH 89 389 54 HOH HOH A . M 7 HOH 90 390 104 HOH HOH A . M 7 HOH 91 391 16 HOH HOH A . M 7 HOH 92 392 30 HOH HOH A . M 7 HOH 93 393 18 HOH HOH A . M 7 HOH 94 394 92 HOH HOH A . M 7 HOH 95 395 141 HOH HOH A . M 7 HOH 96 396 57 HOH HOH A . M 7 HOH 97 397 3 HOH HOH A . M 7 HOH 98 398 82 HOH HOH A . M 7 HOH 99 399 10 HOH HOH A . M 7 HOH 100 400 142 HOH HOH A . M 7 HOH 101 401 136 HOH HOH A . M 7 HOH 102 402 167 HOH HOH A . M 7 HOH 103 403 113 HOH HOH A . M 7 HOH 104 404 29 HOH HOH A . M 7 HOH 105 405 24 HOH HOH A . M 7 HOH 106 406 4 HOH HOH A . M 7 HOH 107 407 117 HOH HOH A . M 7 HOH 108 408 38 HOH HOH A . M 7 HOH 109 409 26 HOH HOH A . M 7 HOH 110 410 154 HOH HOH A . M 7 HOH 111 411 5 HOH HOH A . M 7 HOH 112 412 25 HOH HOH A . M 7 HOH 113 413 140 HOH HOH A . M 7 HOH 114 414 48 HOH HOH A . M 7 HOH 115 415 128 HOH HOH A . M 7 HOH 116 416 61 HOH HOH A . M 7 HOH 117 417 179 HOH HOH A . M 7 HOH 118 418 191 HOH HOH A . M 7 HOH 119 419 118 HOH HOH A . M 7 HOH 120 420 165 HOH HOH A . M 7 HOH 121 421 210 HOH HOH A . M 7 HOH 122 422 107 HOH HOH A . M 7 HOH 123 423 247 HOH HOH A . M 7 HOH 124 424 12 HOH HOH A . M 7 HOH 125 425 145 HOH HOH A . M 7 HOH 126 426 34 HOH HOH A . M 7 HOH 127 427 15 HOH HOH A . M 7 HOH 128 428 220 HOH HOH A . M 7 HOH 129 429 106 HOH HOH A . M 7 HOH 130 430 237 HOH HOH A . M 7 HOH 131 431 19 HOH HOH A . M 7 HOH 132 432 84 HOH HOH A . M 7 HOH 133 433 197 HOH HOH A . M 7 HOH 134 434 47 HOH HOH A . M 7 HOH 135 435 170 HOH HOH A . M 7 HOH 136 436 94 HOH HOH A . M 7 HOH 137 437 70 HOH HOH A . M 7 HOH 138 438 71 HOH HOH A . M 7 HOH 139 439 119 HOH HOH A . M 7 HOH 140 440 254 HOH HOH A . M 7 HOH 141 441 64 HOH HOH A . M 7 HOH 142 442 256 HOH HOH A . M 7 HOH 143 443 260 HOH HOH A . M 7 HOH 144 444 143 HOH HOH A . M 7 HOH 145 445 45 HOH HOH A . M 7 HOH 146 446 108 HOH HOH A . M 7 HOH 147 447 49 HOH HOH A . M 7 HOH 148 448 272 HOH HOH A . M 7 HOH 149 449 230 HOH HOH A . M 7 HOH 150 450 121 HOH HOH A . M 7 HOH 151 451 116 HOH HOH A . M 7 HOH 152 452 9 HOH HOH A . M 7 HOH 153 453 130 HOH HOH A . M 7 HOH 154 454 213 HOH HOH A . M 7 HOH 155 455 231 HOH HOH A . M 7 HOH 156 456 217 HOH HOH A . M 7 HOH 157 457 243 HOH HOH A . M 7 HOH 158 458 78 HOH HOH A . M 7 HOH 159 459 149 HOH HOH A . M 7 HOH 160 460 125 HOH HOH A . M 7 HOH 161 461 173 HOH HOH A . M 7 HOH 162 462 251 HOH HOH A . M 7 HOH 163 463 123 HOH HOH A . M 7 HOH 164 464 76 HOH HOH A . M 7 HOH 165 465 271 HOH HOH A . M 7 HOH 166 466 91 HOH HOH A . M 7 HOH 167 467 112 HOH HOH A . M 7 HOH 168 468 102 HOH HOH A . M 7 HOH 169 469 177 HOH HOH A . M 7 HOH 170 470 135 HOH HOH A . M 7 HOH 171 471 88 HOH HOH A . M 7 HOH 172 472 134 HOH HOH A . M 7 HOH 173 473 234 HOH HOH A . M 7 HOH 174 474 146 HOH HOH A . M 7 HOH 175 475 211 HOH HOH A . M 7 HOH 176 476 282 HOH HOH A . M 7 HOH 177 477 169 HOH HOH A . M 7 HOH 178 478 262 HOH HOH A . M 7 HOH 179 479 277 HOH HOH A . M 7 HOH 180 480 281 HOH HOH A . M 7 HOH 181 481 253 HOH HOH A . M 7 HOH 182 482 185 HOH HOH A . M 7 HOH 183 483 168 HOH HOH A . M 7 HOH 184 484 201 HOH HOH A . M 7 HOH 185 485 93 HOH HOH A . M 7 HOH 186 486 148 HOH HOH A . M 7 HOH 187 487 214 HOH HOH A . M 7 HOH 188 488 276 HOH HOH A . M 7 HOH 189 489 195 HOH HOH A . M 7 HOH 190 490 249 HOH HOH A . M 7 HOH 191 491 80 HOH HOH A . M 7 HOH 192 492 252 HOH HOH A . M 7 HOH 193 493 132 HOH HOH A . M 7 HOH 194 494 99 HOH HOH A . M 7 HOH 195 495 46 HOH HOH A . M 7 HOH 196 496 265 HOH HOH A . M 7 HOH 197 497 129 HOH HOH A . M 7 HOH 198 498 120 HOH HOH A . M 7 HOH 199 499 103 HOH HOH A . M 7 HOH 200 500 161 HOH HOH A . M 7 HOH 201 501 238 HOH HOH A . M 7 HOH 202 502 186 HOH HOH A . M 7 HOH 203 503 200 HOH HOH A . M 7 HOH 204 504 160 HOH HOH A . M 7 HOH 205 505 181 HOH HOH A . M 7 HOH 206 506 192 HOH HOH A . M 7 HOH 207 507 131 HOH HOH A . M 7 HOH 208 508 110 HOH HOH A . M 7 HOH 209 509 226 HOH HOH A . M 7 HOH 210 510 124 HOH HOH A . M 7 HOH 211 511 162 HOH HOH A . M 7 HOH 212 512 175 HOH HOH A . M 7 HOH 213 513 59 HOH HOH A . M 7 HOH 214 514 81 HOH HOH A . M 7 HOH 215 515 176 HOH HOH A . M 7 HOH 216 516 159 HOH HOH A . M 7 HOH 217 517 164 HOH HOH A . M 7 HOH 218 518 89 HOH HOH A . M 7 HOH 219 519 163 HOH HOH A . M 7 HOH 220 520 218 HOH HOH A . M 7 HOH 221 521 158 HOH HOH A . M 7 HOH 222 522 77 HOH HOH A . M 7 HOH 223 523 72 HOH HOH A . M 7 HOH 224 524 133 HOH HOH A . M 7 HOH 225 525 40 HOH HOH A . M 7 HOH 226 526 153 HOH HOH A . M 7 HOH 227 527 127 HOH HOH A . M 7 HOH 228 528 122 HOH HOH A . M 7 HOH 229 529 278 HOH HOH A . M 7 HOH 230 530 188 HOH HOH A . M 7 HOH 231 531 101 HOH HOH A . M 7 HOH 232 532 232 HOH HOH A . M 7 HOH 233 533 203 HOH HOH A . M 7 HOH 234 534 215 HOH HOH A . M 7 HOH 235 535 264 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 208 ? I NA . 2 1 A HOH 374 ? M HOH . 3 1 A HOH 512 ? M HOH . 4 1 A HOH 535 ? M HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 33 ? A HIS 15 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 O2 ? D JI6 . ? A JI6 203 ? 1_555 90.9 ? 2 NE2 ? A HIS 33 ? A HIS 15 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 N1 ? D JI6 . ? A JI6 203 ? 1_555 173.6 ? 3 O2 ? D JI6 . ? A JI6 203 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 N1 ? D JI6 . ? A JI6 203 ? 1_555 82.7 ? 4 NE2 ? A HIS 33 ? A HIS 15 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 O3 ? D JI6 . ? A JI6 203 ? 1_555 94.6 ? 5 O2 ? D JI6 . ? A JI6 203 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 O3 ? D JI6 . ? A JI6 203 ? 1_555 172.6 ? 6 N1 ? D JI6 . ? A JI6 203 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 O3 ? D JI6 . ? A JI6 203 ? 1_555 91.8 ? 7 NE2 ? A HIS 33 ? A HIS 15 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 OG1 ? A THR 107 ? A THR 89 ? 1_555 92.7 ? 8 O2 ? D JI6 . ? A JI6 203 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 OG1 ? A THR 107 ? A THR 89 ? 1_555 94.8 ? 9 N1 ? D JI6 . ? A JI6 203 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 OG1 ? A THR 107 ? A THR 89 ? 1_555 87.9 ? 10 O3 ? D JI6 . ? A JI6 203 ? 1_555 CU ? D JI6 . ? A JI6 203 ? 1_555 OG1 ? A THR 107 ? A THR 89 ? 1_555 89.9 ? 11 OG1 ? A THR 61 ? A THR 43 ? 1_555 NA ? I NA . ? A NA 208 ? 1_555 OG1 ? A THR 61 ? A THR 43 ? 1_555 0.0 ? 12 OD1 A A ASN 62 ? A ASN 44 ? 1_555 NA ? K NA . ? A NA 210 ? 1_555 OD1 B A ASN 62 ? A ASN 44 ? 1_555 60.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-05-10 2 'Structure model' 1 1 2023-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' pdbx_initial_refinement_model # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y+1/2,x+1/2,z+3/4 3 y+1/2,-x+1/2,z+1/4 4 x+1/2,-y+1/2,-z+1/4 5 -x+1/2,y+1/2,-z+3/4 6 -x,-y,z+1/2 7 y,x,-z 8 -y,-x,-z+1/2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 4 # _pdbx_entry_details.entry_id 7YRK _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 529 ? 6.24 . 2 1 O ? A HOH 530 ? 6.33 . 3 1 O ? A HOH 531 ? 6.36 . 4 1 O ? A HOH 532 ? 6.41 . 5 1 O ? A HOH 533 ? 6.80 . 6 1 O ? A HOH 534 ? 6.85 . 7 1 O ? A HOH 535 ? 6.89 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -17 ? A MET 1 2 1 Y 1 A ARG -16 ? A ARG 2 3 1 Y 1 A SER -15 ? A SER 3 4 1 Y 1 A LEU -14 ? A LEU 4 5 1 Y 1 A LEU -13 ? A LEU 5 6 1 Y 1 A ILE -12 ? A ILE 6 7 1 Y 1 A LEU -11 ? A LEU 7 8 1 Y 1 A VAL -10 ? A VAL 8 9 1 Y 1 A LEU -9 ? A LEU 9 10 1 Y 1 A CYS -8 ? A CYS 10 11 1 Y 1 A PHE -7 ? A PHE 11 12 1 Y 1 A LEU -6 ? A LEU 12 13 1 Y 1 A PRO -5 ? A PRO 13 14 1 Y 1 A LEU -4 ? A LEU 14 15 1 Y 1 A ALA -3 ? A ALA 15 16 1 Y 1 A ALA -2 ? A ALA 16 17 1 Y 1 A LEU -1 ? A LEU 17 18 1 Y 1 A GLY 0 ? A GLY 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 74C C C N N 1 74C H2 H N N 2 74C H3 H N N 3 74C H4 H N N 4 ALA N N N N 5 ALA CA C N S 6 ALA C C N N 7 ALA O O N N 8 ALA CB C N N 9 ALA OXT O N N 10 ALA H H N N 11 ALA H2 H N N 12 ALA HA H N N 13 ALA HB1 H N N 14 ALA HB2 H N N 15 ALA HB3 H N N 16 ALA HXT H N N 17 ARG N N N N 18 ARG CA C N S 19 ARG C C N N 20 ARG O O N N 21 ARG CB C N N 22 ARG CG C N N 23 ARG CD C N N 24 ARG NE N N N 25 ARG CZ C N N 26 ARG NH1 N N N 27 ARG NH2 N N N 28 ARG OXT O N N 29 ARG H H N N 30 ARG H2 H N N 31 ARG HA H N N 32 ARG HB2 H N N 33 ARG HB3 H N N 34 ARG HG2 H N N 35 ARG HG3 H N N 36 ARG HD2 H N N 37 ARG HD3 H N N 38 ARG HE H N N 39 ARG HH11 H N N 40 ARG HH12 H N N 41 ARG HH21 H N N 42 ARG HH22 H N N 43 ARG HXT H N N 44 ASN N N N N 45 ASN CA C N S 46 ASN C C N N 47 ASN O O N N 48 ASN CB C N N 49 ASN CG C N N 50 ASN OD1 O N N 51 ASN ND2 N N N 52 ASN OXT O N N 53 ASN H H N N 54 ASN H2 H N N 55 ASN HA H N N 56 ASN HB2 H N N 57 ASN HB3 H N N 58 ASN HD21 H N N 59 ASN HD22 H N N 60 ASN HXT H N N 61 ASP N N N N 62 ASP CA C N S 63 ASP C C N N 64 ASP O O N N 65 ASP CB C N N 66 ASP CG C N N 67 ASP OD1 O N N 68 ASP OD2 O N N 69 ASP OXT O N N 70 ASP H H N N 71 ASP H2 H N N 72 ASP HA H N N 73 ASP HB2 H N N 74 ASP HB3 H N N 75 ASP HD2 H N N 76 ASP HXT H N N 77 CL CL CL N N 78 CYS N N N N 79 CYS CA C N R 80 CYS C C N N 81 CYS O O N N 82 CYS CB C N N 83 CYS SG S N N 84 CYS OXT O N N 85 CYS H H N N 86 CYS H2 H N N 87 CYS HA H N N 88 CYS HB2 H N N 89 CYS HB3 H N N 90 CYS HG H N N 91 CYS HXT H N N 92 EDO C1 C N N 93 EDO O1 O N N 94 EDO C2 C N N 95 EDO O2 O N N 96 EDO H11 H N N 97 EDO H12 H N N 98 EDO HO1 H N N 99 EDO H21 H N N 100 EDO H22 H N N 101 EDO HO2 H N N 102 GLN N N N N 103 GLN CA C N S 104 GLN C C N N 105 GLN O O N N 106 GLN CB C N N 107 GLN CG C N N 108 GLN CD C N N 109 GLN OE1 O N N 110 GLN NE2 N N N 111 GLN OXT O N N 112 GLN H H N N 113 GLN H2 H N N 114 GLN HA H N N 115 GLN HB2 H N N 116 GLN HB3 H N N 117 GLN HG2 H N N 118 GLN HG3 H N N 119 GLN HE21 H N N 120 GLN HE22 H N N 121 GLN HXT H N N 122 GLU N N N N 123 GLU CA C N S 124 GLU C C N N 125 GLU O O N N 126 GLU CB C N N 127 GLU CG C N N 128 GLU CD C N N 129 GLU OE1 O N N 130 GLU OE2 O N N 131 GLU OXT O N N 132 GLU H H N N 133 GLU H2 H N N 134 GLU HA H N N 135 GLU HB2 H N N 136 GLU HB3 H N N 137 GLU HG2 H N N 138 GLU HG3 H N N 139 GLU HE2 H N N 140 GLU HXT H N N 141 GLY N N N N 142 GLY CA C N N 143 GLY C C N N 144 GLY O O N N 145 GLY OXT O N N 146 GLY H H N N 147 GLY H2 H N N 148 GLY HA2 H N N 149 GLY HA3 H N N 150 GLY HXT H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 JI6 C1 C N N 198 JI6 C2 C Y N 199 JI6 C3 C Y N 200 JI6 C4 C Y N 201 JI6 O4 O N N 202 JI6 C5 C Y N 203 JI6 C6 C Y N 204 JI6 C11 C N N 205 JI6 C10 C N R 206 JI6 C7 C Y N 207 JI6 C8 C N N 208 JI6 C9 C N S 209 JI6 CU CU N N 210 JI6 N1 N N N 211 JI6 O1 O N N 212 JI6 O2 O N N 213 JI6 O3 O N N 214 JI6 H1 H N N 215 JI6 H2 H N N 216 JI6 H3 H N N 217 JI6 H4 H N N 218 JI6 H5 H N N 219 JI6 H6 H N N 220 JI6 H7 H N N 221 JI6 H8 H N N 222 JI6 H9 H N N 223 JI6 H10 H N N 224 JI6 H11 H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 NA NA NA N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 74C C H2 sing N N 1 74C C H3 sing N N 2 74C C H4 sing N N 3 ALA N CA sing N N 4 ALA N H sing N N 5 ALA N H2 sing N N 6 ALA CA C sing N N 7 ALA CA CB sing N N 8 ALA CA HA sing N N 9 ALA C O doub N N 10 ALA C OXT sing N N 11 ALA CB HB1 sing N N 12 ALA CB HB2 sing N N 13 ALA CB HB3 sing N N 14 ALA OXT HXT sing N N 15 ARG N CA sing N N 16 ARG N H sing N N 17 ARG N H2 sing N N 18 ARG CA C sing N N 19 ARG CA CB sing N N 20 ARG CA HA sing N N 21 ARG C O doub N N 22 ARG C OXT sing N N 23 ARG CB CG sing N N 24 ARG CB HB2 sing N N 25 ARG CB HB3 sing N N 26 ARG CG CD sing N N 27 ARG CG HG2 sing N N 28 ARG CG HG3 sing N N 29 ARG CD NE sing N N 30 ARG CD HD2 sing N N 31 ARG CD HD3 sing N N 32 ARG NE CZ sing N N 33 ARG NE HE sing N N 34 ARG CZ NH1 sing N N 35 ARG CZ NH2 doub N N 36 ARG NH1 HH11 sing N N 37 ARG NH1 HH12 sing N N 38 ARG NH2 HH21 sing N N 39 ARG NH2 HH22 sing N N 40 ARG OXT HXT sing N N 41 ASN N CA sing N N 42 ASN N H sing N N 43 ASN N H2 sing N N 44 ASN CA C sing N N 45 ASN CA CB sing N N 46 ASN CA HA sing N N 47 ASN C O doub N N 48 ASN C OXT sing N N 49 ASN CB CG sing N N 50 ASN CB HB2 sing N N 51 ASN CB HB3 sing N N 52 ASN CG OD1 doub N N 53 ASN CG ND2 sing N N 54 ASN ND2 HD21 sing N N 55 ASN ND2 HD22 sing N N 56 ASN OXT HXT sing N N 57 ASP N CA sing N N 58 ASP N H sing N N 59 ASP N H2 sing N N 60 ASP CA C sing N N 61 ASP CA CB sing N N 62 ASP CA HA sing N N 63 ASP C O doub N N 64 ASP C OXT sing N N 65 ASP CB CG sing N N 66 ASP CB HB2 sing N N 67 ASP CB HB3 sing N N 68 ASP CG OD1 doub N N 69 ASP CG OD2 sing N N 70 ASP OD2 HD2 sing N N 71 ASP OXT HXT sing N N 72 CYS N CA sing N N 73 CYS N H sing N N 74 CYS N H2 sing N N 75 CYS CA C sing N N 76 CYS CA CB sing N N 77 CYS CA HA sing N N 78 CYS C O doub N N 79 CYS C OXT sing N N 80 CYS CB SG sing N N 81 CYS CB HB2 sing N N 82 CYS CB HB3 sing N N 83 CYS SG HG sing N N 84 CYS OXT HXT sing N N 85 EDO C1 O1 sing N N 86 EDO C1 C2 sing N N 87 EDO C1 H11 sing N N 88 EDO C1 H12 sing N N 89 EDO O1 HO1 sing N N 90 EDO C2 O2 sing N N 91 EDO C2 H21 sing N N 92 EDO C2 H22 sing N N 93 EDO O2 HO2 sing N N 94 GLN N CA sing N N 95 GLN N H sing N N 96 GLN N H2 sing N N 97 GLN CA C sing N N 98 GLN CA CB sing N N 99 GLN CA HA sing N N 100 GLN C O doub N N 101 GLN C OXT sing N N 102 GLN CB CG sing N N 103 GLN CB HB2 sing N N 104 GLN CB HB3 sing N N 105 GLN CG CD sing N N 106 GLN CG HG2 sing N N 107 GLN CG HG3 sing N N 108 GLN CD OE1 doub N N 109 GLN CD NE2 sing N N 110 GLN NE2 HE21 sing N N 111 GLN NE2 HE22 sing N N 112 GLN OXT HXT sing N N 113 GLU N CA sing N N 114 GLU N H sing N N 115 GLU N H2 sing N N 116 GLU CA C sing N N 117 GLU CA CB sing N N 118 GLU CA HA sing N N 119 GLU C O doub N N 120 GLU C OXT sing N N 121 GLU CB CG sing N N 122 GLU CB HB2 sing N N 123 GLU CB HB3 sing N N 124 GLU CG CD sing N N 125 GLU CG HG2 sing N N 126 GLU CG HG3 sing N N 127 GLU CD OE1 doub N N 128 GLU CD OE2 sing N N 129 GLU OE2 HE2 sing N N 130 GLU OXT HXT sing N N 131 GLY N CA sing N N 132 GLY N H sing N N 133 GLY N H2 sing N N 134 GLY CA C sing N N 135 GLY CA HA2 sing N N 136 GLY CA HA3 sing N N 137 GLY C O doub N N 138 GLY C OXT sing N N 139 GLY OXT HXT sing N N 140 HIS N CA sing N N 141 HIS N H sing N N 142 HIS N H2 sing N N 143 HIS CA C sing N N 144 HIS CA CB sing N N 145 HIS CA HA sing N N 146 HIS C O doub N N 147 HIS C OXT sing N N 148 HIS CB CG sing N N 149 HIS CB HB2 sing N N 150 HIS CB HB3 sing N N 151 HIS CG ND1 sing Y N 152 HIS CG CD2 doub Y N 153 HIS ND1 CE1 doub Y N 154 HIS ND1 HD1 sing N N 155 HIS CD2 NE2 sing Y N 156 HIS CD2 HD2 sing N N 157 HIS CE1 NE2 sing Y N 158 HIS CE1 HE1 sing N N 159 HIS NE2 HE2 sing N N 160 HIS OXT HXT sing N N 161 HOH O H1 sing N N 162 HOH O H2 sing N N 163 ILE N CA sing N N 164 ILE N H sing N N 165 ILE N H2 sing N N 166 ILE CA C sing N N 167 ILE CA CB sing N N 168 ILE CA HA sing N N 169 ILE C O doub N N 170 ILE C OXT sing N N 171 ILE CB CG1 sing N N 172 ILE CB CG2 sing N N 173 ILE CB HB sing N N 174 ILE CG1 CD1 sing N N 175 ILE CG1 HG12 sing N N 176 ILE CG1 HG13 sing N N 177 ILE CG2 HG21 sing N N 178 ILE CG2 HG22 sing N N 179 ILE CG2 HG23 sing N N 180 ILE CD1 HD11 sing N N 181 ILE CD1 HD12 sing N N 182 ILE CD1 HD13 sing N N 183 ILE OXT HXT sing N N 184 JI6 O1 C1 doub N N 185 JI6 O4 C10 sing N N 186 JI6 C10 C11 sing N N 187 JI6 C10 C9 sing N N 188 JI6 C1 O2 sing N N 189 JI6 C1 C9 sing N N 190 JI6 O2 CU sing N N 191 JI6 C9 N1 sing N N 192 JI6 N1 CU sing N N 193 JI6 N1 C8 doub N N 194 JI6 CU O3 sing N N 195 JI6 C8 C7 sing N N 196 JI6 O3 C2 sing N N 197 JI6 C7 C2 sing Y N 198 JI6 C7 C6 doub Y N 199 JI6 C2 C3 doub Y N 200 JI6 C6 C5 sing Y N 201 JI6 C3 C4 sing Y N 202 JI6 C5 C4 doub Y N 203 JI6 C3 H1 sing N N 204 JI6 C4 H2 sing N N 205 JI6 O4 H3 sing N N 206 JI6 C5 H4 sing N N 207 JI6 C6 H5 sing N N 208 JI6 C11 H6 sing N N 209 JI6 C11 H7 sing N N 210 JI6 C11 H8 sing N N 211 JI6 C10 H9 sing N N 212 JI6 C8 H10 sing N N 213 JI6 C9 H11 sing N N 214 LEU N CA sing N N 215 LEU N H sing N N 216 LEU N H2 sing N N 217 LEU CA C sing N N 218 LEU CA CB sing N N 219 LEU CA HA sing N N 220 LEU C O doub N N 221 LEU C OXT sing N N 222 LEU CB CG sing N N 223 LEU CB HB2 sing N N 224 LEU CB HB3 sing N N 225 LEU CG CD1 sing N N 226 LEU CG CD2 sing N N 227 LEU CG HG sing N N 228 LEU CD1 HD11 sing N N 229 LEU CD1 HD12 sing N N 230 LEU CD1 HD13 sing N N 231 LEU CD2 HD21 sing N N 232 LEU CD2 HD22 sing N N 233 LEU CD2 HD23 sing N N 234 LEU OXT HXT sing N N 235 LYS N CA sing N N 236 LYS N H sing N N 237 LYS N H2 sing N N 238 LYS CA C sing N N 239 LYS CA CB sing N N 240 LYS CA HA sing N N 241 LYS C O doub N N 242 LYS C OXT sing N N 243 LYS CB CG sing N N 244 LYS CB HB2 sing N N 245 LYS CB HB3 sing N N 246 LYS CG CD sing N N 247 LYS CG HG2 sing N N 248 LYS CG HG3 sing N N 249 LYS CD CE sing N N 250 LYS CD HD2 sing N N 251 LYS CD HD3 sing N N 252 LYS CE NZ sing N N 253 LYS CE HE2 sing N N 254 LYS CE HE3 sing N N 255 LYS NZ HZ1 sing N N 256 LYS NZ HZ2 sing N N 257 LYS NZ HZ3 sing N N 258 LYS OXT HXT sing N N 259 MET N CA sing N N 260 MET N H sing N N 261 MET N H2 sing N N 262 MET CA C sing N N 263 MET CA CB sing N N 264 MET CA HA sing N N 265 MET C O doub N N 266 MET C OXT sing N N 267 MET CB CG sing N N 268 MET CB HB2 sing N N 269 MET CB HB3 sing N N 270 MET CG SD sing N N 271 MET CG HG2 sing N N 272 MET CG HG3 sing N N 273 MET SD CE sing N N 274 MET CE HE1 sing N N 275 MET CE HE2 sing N N 276 MET CE HE3 sing N N 277 MET OXT HXT sing N N 278 PHE N CA sing N N 279 PHE N H sing N N 280 PHE N H2 sing N N 281 PHE CA C sing N N 282 PHE CA CB sing N N 283 PHE CA HA sing N N 284 PHE C O doub N N 285 PHE C OXT sing N N 286 PHE CB CG sing N N 287 PHE CB HB2 sing N N 288 PHE CB HB3 sing N N 289 PHE CG CD1 doub Y N 290 PHE CG CD2 sing Y N 291 PHE CD1 CE1 sing Y N 292 PHE CD1 HD1 sing N N 293 PHE CD2 CE2 doub Y N 294 PHE CD2 HD2 sing N N 295 PHE CE1 CZ doub Y N 296 PHE CE1 HE1 sing N N 297 PHE CE2 CZ sing Y N 298 PHE CE2 HE2 sing N N 299 PHE CZ HZ sing N N 300 PHE OXT HXT sing N N 301 PRO N CA sing N N 302 PRO N CD sing N N 303 PRO N H sing N N 304 PRO CA C sing N N 305 PRO CA CB sing N N 306 PRO CA HA sing N N 307 PRO C O doub N N 308 PRO C OXT sing N N 309 PRO CB CG sing N N 310 PRO CB HB2 sing N N 311 PRO CB HB3 sing N N 312 PRO CG CD sing N N 313 PRO CG HG2 sing N N 314 PRO CG HG3 sing N N 315 PRO CD HD2 sing N N 316 PRO CD HD3 sing N N 317 PRO OXT HXT sing N N 318 SER N CA sing N N 319 SER N H sing N N 320 SER N H2 sing N N 321 SER CA C sing N N 322 SER CA CB sing N N 323 SER CA HA sing N N 324 SER C O doub N N 325 SER C OXT sing N N 326 SER CB OG sing N N 327 SER CB HB2 sing N N 328 SER CB HB3 sing N N 329 SER OG HG sing N N 330 SER OXT HXT sing N N 331 THR N CA sing N N 332 THR N H sing N N 333 THR N H2 sing N N 334 THR CA C sing N N 335 THR CA CB sing N N 336 THR CA HA sing N N 337 THR C O doub N N 338 THR C OXT sing N N 339 THR CB OG1 sing N N 340 THR CB CG2 sing N N 341 THR CB HB sing N N 342 THR OG1 HG1 sing N N 343 THR CG2 HG21 sing N N 344 THR CG2 HG22 sing N N 345 THR CG2 HG23 sing N N 346 THR OXT HXT sing N N 347 TRP N CA sing N N 348 TRP N H sing N N 349 TRP N H2 sing N N 350 TRP CA C sing N N 351 TRP CA CB sing N N 352 TRP CA HA sing N N 353 TRP C O doub N N 354 TRP C OXT sing N N 355 TRP CB CG sing N N 356 TRP CB HB2 sing N N 357 TRP CB HB3 sing N N 358 TRP CG CD1 doub Y N 359 TRP CG CD2 sing Y N 360 TRP CD1 NE1 sing Y N 361 TRP CD1 HD1 sing N N 362 TRP CD2 CE2 doub Y N 363 TRP CD2 CE3 sing Y N 364 TRP NE1 CE2 sing Y N 365 TRP NE1 HE1 sing N N 366 TRP CE2 CZ2 sing Y N 367 TRP CE3 CZ3 doub Y N 368 TRP CE3 HE3 sing N N 369 TRP CZ2 CH2 doub Y N 370 TRP CZ2 HZ2 sing N N 371 TRP CZ3 CH2 sing Y N 372 TRP CZ3 HZ3 sing N N 373 TRP CH2 HH2 sing N N 374 TRP OXT HXT sing N N 375 TYR N CA sing N N 376 TYR N H sing N N 377 TYR N H2 sing N N 378 TYR CA C sing N N 379 TYR CA CB sing N N 380 TYR CA HA sing N N 381 TYR C O doub N N 382 TYR C OXT sing N N 383 TYR CB CG sing N N 384 TYR CB HB2 sing N N 385 TYR CB HB3 sing N N 386 TYR CG CD1 doub Y N 387 TYR CG CD2 sing Y N 388 TYR CD1 CE1 sing Y N 389 TYR CD1 HD1 sing N N 390 TYR CD2 CE2 doub Y N 391 TYR CD2 HD2 sing N N 392 TYR CE1 CZ doub Y N 393 TYR CE1 HE1 sing N N 394 TYR CE2 CZ sing Y N 395 TYR CE2 HE2 sing N N 396 TYR CZ OH sing N N 397 TYR OH HH sing N N 398 TYR OXT HXT sing N N 399 VAL N CA sing N N 400 VAL N H sing N N 401 VAL N H2 sing N N 402 VAL CA C sing N N 403 VAL CA CB sing N N 404 VAL CA HA sing N N 405 VAL C O doub N N 406 VAL C OXT sing N N 407 VAL CB CG1 sing N N 408 VAL CB CG2 sing N N 409 VAL CB HB sing N N 410 VAL CG1 HG11 sing N N 411 VAL CG1 HG12 sing N N 412 VAL CG1 HG13 sing N N 413 VAL CG2 HG21 sing N N 414 VAL CG2 HG22 sing N N 415 VAL CG2 HG23 sing N N 416 VAL OXT HXT sing N N 417 # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 20H00336 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 JI6 ? ? JI6 ? ? 'SUBJECT OF INVESTIGATION' ? 2 74C ? ? 74C ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 'CHLORIDE ION' CL 4 '(6~{S})-6-[(1~{R})-1-oxidanylethyl]-2,4-dioxa-7$l^{4}-aza-3$l^{3}-cupratricyclo[7.4.0.0^{3,7}]trideca-1(13),7,9,11-tetraen-5-one' JI6 5 'SODIUM ION' NA 6 'methyl radical' 74C 7 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5LYT _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _space_group.name_H-M_alt 'P 43 21 2' _space_group.name_Hall 'P 4nw 2abw' _space_group.IT_number 96 _space_group.crystal_system tetragonal _space_group.id 1 #