HEADER IMMUNE SYSTEM 16-AUG-22 7YTX TITLE CRYSTAL STRUCTURE OF TLR8 IN COMPLEX WITH ITS ANTAGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 8; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TLR8, UNQ249/PRO286; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 32281 KEYWDS TOLL-LIKE RECEPTOR 8, INHIBITOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.SHIMIZU,K.SAKANIWA REVDAT 1 27-SEP-23 7YTX 0 JRNL AUTH S.T.ISHIZAKA,L.HAWKINS,Q.CHEN,F.TAGO,T.YAGI,K.SAKANIWA, JRNL AUTH 2 Z.ZHANG,T.SHIMIZU,M.SHIRATO JRNL TITL A NOVEL TOLL-LIKE RECEPTOR 7/8-SPECIFIC ANTAGONIST E6742 JRNL TITL 2 AMELIORATES CLINICALLY RELEVANT DISEASE PARAMETERS IN MURINE JRNL TITL 3 MODELS OF LUPUS. JRNL REF EUR.J.PHARMACOL. V. 957 75962 2023 JRNL REFN ISSN 0014-2999 JRNL PMID 37544422 JRNL DOI 10.1016/J.EJPHAR.2023.175962 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.420 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3500 - 7.3000 1.00 2635 147 0.1960 0.2439 REMARK 3 2 7.3000 - 5.8000 1.00 2586 140 0.1969 0.2781 REMARK 3 3 5.8000 - 5.0700 1.00 2603 141 0.2067 0.3146 REMARK 3 4 5.0600 - 4.6000 1.00 2577 118 0.1836 0.2706 REMARK 3 5 4.6000 - 4.2700 1.00 2586 148 0.1861 0.2625 REMARK 3 6 4.2700 - 4.0200 1.00 2545 138 0.1980 0.2866 REMARK 3 7 4.0200 - 3.8200 1.00 2566 132 0.2045 0.3047 REMARK 3 8 3.8200 - 3.6500 1.00 2556 143 0.1973 0.3001 REMARK 3 9 3.6500 - 3.5100 1.00 2571 131 0.2170 0.3018 REMARK 3 10 3.5100 - 3.3900 1.00 2546 138 0.2346 0.2894 REMARK 3 11 3.3900 - 3.2900 1.00 2587 129 0.2742 0.3536 REMARK 3 12 3.2900 - 3.1900 1.00 2564 137 0.2746 0.3420 REMARK 3 13 3.1900 - 3.1100 1.00 2540 135 0.2902 0.3675 REMARK 3 14 3.1100 - 3.0300 1.00 2517 148 0.3448 0.3877 REMARK 3 15 3.0300 - 2.9600 1.00 2574 146 0.3695 0.3684 REMARK 3 16 2.9600 - 2.9000 1.00 2559 142 0.3857 0.3909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 13043 REMARK 3 ANGLE : 1.795 17697 REMARK 3 CHIRALITY : 0.210 2185 REMARK 3 PLANARITY : 0.030 2195 REMARK 3 DIHEDRAL : 17.670 5029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 32:816 OR RESID 901:910 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.971 0.205 52.666 REMARK 3 T TENSOR REMARK 3 T11: 0.2416 T22: 0.9053 REMARK 3 T33: 0.4087 T12: -0.0490 REMARK 3 T13: -0.0179 T23: 0.0825 REMARK 3 L TENSOR REMARK 3 L11: 0.5019 L22: 1.0472 REMARK 3 L33: 1.0916 L12: 0.1439 REMARK 3 L13: 0.2950 L23: 0.3411 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.1417 S13: 0.2751 REMARK 3 S21: 0.1141 S22: -0.0186 S23: 0.1407 REMARK 3 S31: -0.0928 S32: -0.1510 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 32:821 OR RESID 901:911 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.010 -24.516 17.882 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 1.6385 REMARK 3 T33: 0.1697 T12: 0.0508 REMARK 3 T13: -0.1632 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.7634 L22: 0.7311 REMARK 3 L33: 0.7112 L12: -0.1349 REMARK 3 L13: 0.1576 L23: 0.2047 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 1.1348 S13: -0.1304 REMARK 3 S21: 0.0986 S22: 0.0032 S23: 0.2635 REMARK 3 S31: -0.0032 S32: 0.1953 S33: -0.0234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43346 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 181.4 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5WYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.2M CALCIUM CHLORIDE, REMARK 280 0.1M TRIS-HCL PH 8.0, 20% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.82000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 48.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 23 REMARK 465 SER A 24 REMARK 465 PRO A 25 REMARK 465 TRP A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 ASN A 29 REMARK 465 PHE A 30 REMARK 465 SER A 31 REMARK 465 GLN A 101 REMARK 465 HIS A 102 REMARK 465 GLN A 103 REMARK 465 ASN A 104 REMARK 465 GLY A 105 REMARK 465 ASN A 106 REMARK 465 PRO A 107 REMARK 465 GLY A 108 REMARK 465 ILE A 109 REMARK 465 GLN A 110 REMARK 465 SER A 111 REMARK 465 ASP A 436 REMARK 465 THR A 437 REMARK 465 ARG A 438 REMARK 465 GLN A 439 REMARK 465 SER A 440 REMARK 465 TYR A 441 REMARK 465 ALA A 442 REMARK 465 ASN A 443 REMARK 465 SER A 444 REMARK 465 SER A 445 REMARK 465 SER A 446 REMARK 465 PHE A 447 REMARK 465 GLN A 448 REMARK 465 ARG A 449 REMARK 465 HIS A 450 REMARK 465 ILE A 451 REMARK 465 ARG A 452 REMARK 465 LYS A 453 REMARK 465 ARG A 454 REMARK 465 ARG A 455 REMARK 465 SER A 456 REMARK 465 THR A 457 REMARK 465 ASP A 458 REMARK 465 PHE A 459 REMARK 465 GLU A 460 REMARK 465 LEU A 817 REMARK 465 GLU A 818 REMARK 465 LEU A 819 REMARK 465 THR A 820 REMARK 465 THR A 821 REMARK 465 CYS A 822 REMARK 465 VAL A 823 REMARK 465 SER A 824 REMARK 465 ASP A 825 REMARK 465 VAL A 826 REMARK 465 THR A 827 REMARK 465 GLU A 828 REMARK 465 PHE A 829 REMARK 465 LEU A 830 REMARK 465 VAL A 831 REMARK 465 PRO A 832 REMARK 465 ARG A 833 REMARK 465 ARG B 23 REMARK 465 SER B 24 REMARK 465 PRO B 25 REMARK 465 TRP B 26 REMARK 465 GLU B 27 REMARK 465 GLU B 28 REMARK 465 ASN B 29 REMARK 465 PHE B 30 REMARK 465 SER B 31 REMARK 465 GLN B 101 REMARK 465 HIS B 102 REMARK 465 GLN B 103 REMARK 465 ASN B 104 REMARK 465 GLY B 105 REMARK 465 ASN B 106 REMARK 465 PRO B 107 REMARK 465 GLY B 108 REMARK 465 ILE B 109 REMARK 465 GLN B 110 REMARK 465 SER B 111 REMARK 465 ARG B 438 REMARK 465 GLN B 439 REMARK 465 SER B 440 REMARK 465 TYR B 441 REMARK 465 ALA B 442 REMARK 465 ASN B 443 REMARK 465 SER B 444 REMARK 465 SER B 445 REMARK 465 SER B 446 REMARK 465 PHE B 447 REMARK 465 GLN B 448 REMARK 465 ARG B 449 REMARK 465 HIS B 450 REMARK 465 ILE B 451 REMARK 465 ARG B 452 REMARK 465 LYS B 453 REMARK 465 ARG B 454 REMARK 465 ARG B 455 REMARK 465 SER B 456 REMARK 465 THR B 457 REMARK 465 ASP B 458 REMARK 465 PHE B 459 REMARK 465 GLU B 460 REMARK 465 LEU B 756 REMARK 465 GLU B 757 REMARK 465 THR B 758 REMARK 465 LYS B 759 REMARK 465 THR B 760 REMARK 465 THR B 761 REMARK 465 CYS B 822 REMARK 465 VAL B 823 REMARK 465 SER B 824 REMARK 465 ASP B 825 REMARK 465 VAL B 826 REMARK 465 THR B 827 REMARK 465 GLU B 828 REMARK 465 PHE B 829 REMARK 465 LEU B 830 REMARK 465 VAL B 831 REMARK 465 PRO B 832 REMARK 465 ARG B 833 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 BMA E 3 O5 MAN E 4 1.54 REMARK 500 O4 NAG D 1 O5 NAG D 2 1.95 REMARK 500 O2 MAN I 4 C2 MAN I 5 1.95 REMARK 500 O4 NAG E 1 O5 NAG E 2 1.98 REMARK 500 O6 BMA C 3 O5 MAN C 4 2.00 REMARK 500 O LEU B 248 O GLN B 288 2.01 REMARK 500 O4 NAG I 1 O5 NAG I 2 2.01 REMARK 500 O4 NAG E 2 O5 BMA E 3 2.02 REMARK 500 O4 NAG H 1 O5 NAG H 2 2.03 REMARK 500 CG ASN B 293 C1 NAG G 1 2.05 REMARK 500 O4 NAG G 2 C2 BMA G 3 2.07 REMARK 500 O PRO B 337 OG SER B 368 2.08 REMARK 500 O2 MAN E 4 O5 MAN E 5 2.09 REMARK 500 O4 NAG G 1 O5 NAG G 2 2.10 REMARK 500 ND2 ASN B 293 C2 NAG G 1 2.12 REMARK 500 O4 NAG E 1 C2 NAG E 2 2.13 REMARK 500 C4 NAG E 2 C1 BMA E 3 2.13 REMARK 500 ND2 ASN B 590 O5 NAG I 1 2.15 REMARK 500 O GLU B 657 ND2 ASN B 661 2.15 REMARK 500 O GLN A 284 ND2 ASN A 309 2.15 REMARK 500 ND2 ASN A 590 O5 NAG E 1 2.15 REMARK 500 O3 MAN C 4 O5 MAN C 5 2.17 REMARK 500 O ASN B 93 O LEU B 131 2.17 REMARK 500 O4 NAG C 1 O5 NAG C 2 2.17 REMARK 500 O3 MAN E 6 O5 MAN E 7 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 -112.78 43.43 REMARK 500 SER A 44 -178.11 169.46 REMARK 500 ARG A 53 11.01 52.92 REMARK 500 GLN A 87 -6.26 -59.24 REMARK 500 ASN A 93 -81.80 -89.17 REMARK 500 LEU A 94 -22.22 80.13 REMARK 500 HIS A 96 29.49 87.53 REMARK 500 PRO A 98 -158.00 -80.52 REMARK 500 ASN A 99 -148.36 -129.45 REMARK 500 LEU A 130 105.94 -175.87 REMARK 500 LEU A 132 53.25 -159.32 REMARK 500 ASP A 134 61.20 79.27 REMARK 500 PRO A 141 142.11 -33.34 REMARK 500 GLU A 150 113.94 -164.18 REMARK 500 ASN A 156 -151.09 -129.95 REMARK 500 TRP A 179 75.00 58.45 REMARK 500 ASN A 180 -54.11 -134.83 REMARK 500 CYS A 181 64.13 -102.43 REMARK 500 TYR A 182 70.41 -111.15 REMARK 500 PHE A 183 70.77 71.60 REMARK 500 LYS A 185 -5.11 67.01 REMARK 500 ASP A 194 106.49 -41.21 REMARK 500 THR A 199 38.87 -98.83 REMARK 500 LEU A 200 56.33 -105.61 REMARK 500 SER A 209 157.81 -48.92 REMARK 500 SER A 212 93.01 -66.77 REMARK 500 LYS A 219 52.32 74.04 REMARK 500 SER A 238 -169.83 -67.88 REMARK 500 LEU A 245 52.81 -107.32 REMARK 500 PRO A 264 47.89 -98.28 REMARK 500 SER A 296 80.85 45.14 REMARK 500 ASN A 303 96.18 -61.37 REMARK 500 ALA A 304 0.60 -59.64 REMARK 500 MET A 310 68.96 -110.77 REMARK 500 LEU A 318 35.24 -141.49 REMARK 500 LEU A 333 -9.52 -48.96 REMARK 500 PRO A 354 174.66 -54.70 REMARK 500 ASN A 362 11.46 -64.13 REMARK 500 VAL A 378 111.97 70.94 REMARK 500 ASN A 416 35.44 -75.02 REMARK 500 GLU A 421 -52.41 -122.06 REMARK 500 ASN A 428 -161.79 -108.92 REMARK 500 PRO A 498 -11.98 -48.38 REMARK 500 ASN A 503 24.39 80.73 REMARK 500 PRO A 505 172.90 -55.05 REMARK 500 ALA A 514 57.69 72.77 REMARK 500 SER A 516 52.89 31.85 REMARK 500 THR A 524 -3.22 -142.73 REMARK 500 ARG A 541 40.23 -142.72 REMARK 500 PHE A 544 52.13 -146.22 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 376 TYR A 377 148.25 REMARK 500 LEU A 738 LYS A 739 -130.05 REMARK 500 GLY B 376 TYR B 377 149.16 REMARK 500 THR B 524 GLU B 525 -146.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 32 0.13 SIDE CHAIN REMARK 500 ARG A 52 0.08 SIDE CHAIN REMARK 500 ARG A 53 0.10 SIDE CHAIN REMARK 500 ARG A 128 0.10 SIDE CHAIN REMARK 500 ARG A 361 0.10 SIDE CHAIN REMARK 500 ARG A 375 0.10 SIDE CHAIN REMARK 500 ARG A 472 0.10 SIDE CHAIN REMARK 500 ARG A 619 0.08 SIDE CHAIN REMARK 500 ARG A 689 0.07 SIDE CHAIN REMARK 500 ARG A 715 0.16 SIDE CHAIN REMARK 500 ARG A 785 0.13 SIDE CHAIN REMARK 500 ARG B 53 0.10 SIDE CHAIN REMARK 500 ARG B 225 0.07 SIDE CHAIN REMARK 500 ARG B 338 0.09 SIDE CHAIN REMARK 500 ARG B 361 0.17 SIDE CHAIN REMARK 500 ARG B 370 0.08 SIDE CHAIN REMARK 500 ARG B 375 0.09 SIDE CHAIN REMARK 500 ARG B 429 0.09 SIDE CHAIN REMARK 500 ARG B 643 0.14 SIDE CHAIN REMARK 500 ARG B 689 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5WYX RELATED DB: PDB REMARK 900 RELATED ID: 3W3G RELATED DB: PDB DBREF 7YTX A 27 827 UNP Q9NR97 TLR8_HUMAN 27 827 DBREF 7YTX B 27 827 UNP Q9NR97 TLR8_HUMAN 27 827 SEQADV 7YTX ARG A 23 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX SER A 24 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX PRO A 25 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX TRP A 26 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX GLU A 828 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX PHE A 829 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX LEU A 830 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX VAL A 831 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX PRO A 832 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX ARG A 833 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX ARG B 23 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX SER B 24 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX PRO B 25 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX TRP B 26 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX GLU B 828 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX PHE B 829 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX LEU B 830 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX VAL B 831 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX PRO B 832 UNP Q9NR97 EXPRESSION TAG SEQADV 7YTX ARG B 833 UNP Q9NR97 EXPRESSION TAG SEQRES 1 A 811 ARG SER PRO TRP GLU GLU ASN PHE SER ARG SER TYR PRO SEQRES 2 A 811 CYS ASP GLU LYS LYS GLN ASN ASP SER VAL ILE ALA GLU SEQRES 3 A 811 CYS SER ASN ARG ARG LEU GLN GLU VAL PRO GLN THR VAL SEQRES 4 A 811 GLY LYS TYR VAL THR GLU LEU ASP LEU SER ASP ASN PHE SEQRES 5 A 811 ILE THR HIS ILE THR ASN GLU SER PHE GLN GLY LEU GLN SEQRES 6 A 811 ASN LEU THR LYS ILE ASN LEU ASN HIS ASN PRO ASN VAL SEQRES 7 A 811 GLN HIS GLN ASN GLY ASN PRO GLY ILE GLN SER ASN GLY SEQRES 8 A 811 LEU ASN ILE THR ASP GLY ALA PHE LEU ASN LEU LYS ASN SEQRES 9 A 811 LEU ARG GLU LEU LEU LEU GLU ASP ASN GLN LEU PRO GLN SEQRES 10 A 811 ILE PRO SER GLY LEU PRO GLU SER LEU THR GLU LEU SER SEQRES 11 A 811 LEU ILE GLN ASN ASN ILE TYR ASN ILE THR LYS GLU GLY SEQRES 12 A 811 ILE SER ARG LEU ILE ASN LEU LYS ASN LEU TYR LEU ALA SEQRES 13 A 811 TRP ASN CYS TYR PHE ASN LYS VAL CYS GLU LYS THR ASN SEQRES 14 A 811 ILE GLU ASP GLY VAL PHE GLU THR LEU THR ASN LEU GLU SEQRES 15 A 811 LEU LEU SER LEU SER PHE ASN SER LEU SER HIS VAL PRO SEQRES 16 A 811 PRO LYS LEU PRO SER SER LEU ARG LYS LEU PHE LEU SER SEQRES 17 A 811 ASN THR GLN ILE LYS TYR ILE SER GLU GLU ASP PHE LYS SEQRES 18 A 811 GLY LEU ILE ASN LEU THR LEU LEU ASP LEU SER GLY ASN SEQRES 19 A 811 CYS PRO ARG CYS PHE ASN ALA PRO PHE PRO CYS VAL PRO SEQRES 20 A 811 CYS ASP GLY GLY ALA SER ILE ASN ILE ASP ARG PHE ALA SEQRES 21 A 811 PHE GLN ASN LEU THR GLN LEU ARG TYR LEU ASN LEU SER SEQRES 22 A 811 SER THR SER LEU ARG LYS ILE ASN ALA ALA TRP PHE LYS SEQRES 23 A 811 ASN MET PRO HIS LEU LYS VAL LEU ASP LEU GLU PHE ASN SEQRES 24 A 811 TYR LEU VAL GLY GLU ILE ALA SER GLY ALA PHE LEU THR SEQRES 25 A 811 MET LEU PRO ARG LEU GLU ILE LEU ASP LEU SER PHE ASN SEQRES 26 A 811 TYR ILE LYS GLY SER TYR PRO GLN HIS ILE ASN ILE SER SEQRES 27 A 811 ARG ASN PHE SER LYS LEU LEU SER LEU ARG ALA LEU HIS SEQRES 28 A 811 LEU ARG GLY TYR VAL PHE GLN GLU LEU ARG GLU ASP ASP SEQRES 29 A 811 PHE GLN PRO LEU MET GLN LEU PRO ASN LEU SER THR ILE SEQRES 30 A 811 ASN LEU GLY ILE ASN PHE ILE LYS GLN ILE ASP PHE LYS SEQRES 31 A 811 LEU PHE GLN ASN PHE SER ASN LEU GLU ILE ILE TYR LEU SEQRES 32 A 811 SER GLU ASN ARG ILE SER PRO LEU VAL LYS ASP THR ARG SEQRES 33 A 811 GLN SER TYR ALA ASN SER SER SER PHE GLN ARG HIS ILE SEQRES 34 A 811 ARG LYS ARG ARG SER THR ASP PHE GLU PHE ASP PRO HIS SEQRES 35 A 811 SER ASN PHE TYR HIS PHE THR ARG PRO LEU ILE LYS PRO SEQRES 36 A 811 GLN CYS ALA ALA TYR GLY LYS ALA LEU ASP LEU SER LEU SEQRES 37 A 811 ASN SER ILE PHE PHE ILE GLY PRO ASN GLN PHE GLU ASN SEQRES 38 A 811 LEU PRO ASP ILE ALA CYS LEU ASN LEU SER ALA ASN SER SEQRES 39 A 811 ASN ALA GLN VAL LEU SER GLY THR GLU PHE SER ALA ILE SEQRES 40 A 811 PRO HIS VAL LYS TYR LEU ASP LEU THR ASN ASN ARG LEU SEQRES 41 A 811 ASP PHE ASP ASN ALA SER ALA LEU THR GLU LEU SER ASP SEQRES 42 A 811 LEU GLU VAL LEU ASP LEU SER TYR ASN SER HIS TYR PHE SEQRES 43 A 811 ARG ILE ALA GLY VAL THR HIS HIS LEU GLU PHE ILE GLN SEQRES 44 A 811 ASN PHE THR ASN LEU LYS VAL LEU ASN LEU SER HIS ASN SEQRES 45 A 811 ASN ILE TYR THR LEU THR ASP LYS TYR ASN LEU GLU SER SEQRES 46 A 811 LYS SER LEU VAL GLU LEU VAL PHE SER GLY ASN ARG LEU SEQRES 47 A 811 ASP ILE LEU TRP ASN ASP ASP ASP ASN ARG TYR ILE SER SEQRES 48 A 811 ILE PHE LYS GLY LEU LYS ASN LEU THR ARG LEU ASP LEU SEQRES 49 A 811 SER LEU ASN ARG LEU LYS HIS ILE PRO ASN GLU ALA PHE SEQRES 50 A 811 LEU ASN LEU PRO ALA SER LEU THR GLU LEU HIS ILE ASN SEQRES 51 A 811 ASP ASN MET LEU LYS PHE PHE ASN TRP THR LEU LEU GLN SEQRES 52 A 811 GLN PHE PRO ARG LEU GLU LEU LEU ASP LEU ARG GLY ASN SEQRES 53 A 811 LYS LEU LEU PHE LEU THR ASP SER LEU SER ASP PHE THR SEQRES 54 A 811 SER SER LEU ARG THR LEU LEU LEU SER HIS ASN ARG ILE SEQRES 55 A 811 SER HIS LEU PRO SER GLY PHE LEU SER GLU VAL SER SER SEQRES 56 A 811 LEU LYS HIS LEU ASP LEU SER SER ASN LEU LEU LYS THR SEQRES 57 A 811 ILE ASN LYS SER ALA LEU GLU THR LYS THR THR THR LYS SEQRES 58 A 811 LEU SER MET LEU GLU LEU HIS GLY ASN PRO PHE GLU CYS SEQRES 59 A 811 THR CYS ASP ILE GLY ASP PHE ARG ARG TRP MET ASP GLU SEQRES 60 A 811 HIS LEU ASN VAL LYS ILE PRO ARG LEU VAL ASP VAL ILE SEQRES 61 A 811 CYS ALA SER PRO GLY ASP GLN ARG GLY LYS SER ILE VAL SEQRES 62 A 811 SER LEU GLU LEU THR THR CYS VAL SER ASP VAL THR GLU SEQRES 63 A 811 PHE LEU VAL PRO ARG SEQRES 1 B 811 ARG SER PRO TRP GLU GLU ASN PHE SER ARG SER TYR PRO SEQRES 2 B 811 CYS ASP GLU LYS LYS GLN ASN ASP SER VAL ILE ALA GLU SEQRES 3 B 811 CYS SER ASN ARG ARG LEU GLN GLU VAL PRO GLN THR VAL SEQRES 4 B 811 GLY LYS TYR VAL THR GLU LEU ASP LEU SER ASP ASN PHE SEQRES 5 B 811 ILE THR HIS ILE THR ASN GLU SER PHE GLN GLY LEU GLN SEQRES 6 B 811 ASN LEU THR LYS ILE ASN LEU ASN HIS ASN PRO ASN VAL SEQRES 7 B 811 GLN HIS GLN ASN GLY ASN PRO GLY ILE GLN SER ASN GLY SEQRES 8 B 811 LEU ASN ILE THR ASP GLY ALA PHE LEU ASN LEU LYS ASN SEQRES 9 B 811 LEU ARG GLU LEU LEU LEU GLU ASP ASN GLN LEU PRO GLN SEQRES 10 B 811 ILE PRO SER GLY LEU PRO GLU SER LEU THR GLU LEU SER SEQRES 11 B 811 LEU ILE GLN ASN ASN ILE TYR ASN ILE THR LYS GLU GLY SEQRES 12 B 811 ILE SER ARG LEU ILE ASN LEU LYS ASN LEU TYR LEU ALA SEQRES 13 B 811 TRP ASN CYS TYR PHE ASN LYS VAL CYS GLU LYS THR ASN SEQRES 14 B 811 ILE GLU ASP GLY VAL PHE GLU THR LEU THR ASN LEU GLU SEQRES 15 B 811 LEU LEU SER LEU SER PHE ASN SER LEU SER HIS VAL PRO SEQRES 16 B 811 PRO LYS LEU PRO SER SER LEU ARG LYS LEU PHE LEU SER SEQRES 17 B 811 ASN THR GLN ILE LYS TYR ILE SER GLU GLU ASP PHE LYS SEQRES 18 B 811 GLY LEU ILE ASN LEU THR LEU LEU ASP LEU SER GLY ASN SEQRES 19 B 811 CYS PRO ARG CYS PHE ASN ALA PRO PHE PRO CYS VAL PRO SEQRES 20 B 811 CYS ASP GLY GLY ALA SER ILE ASN ILE ASP ARG PHE ALA SEQRES 21 B 811 PHE GLN ASN LEU THR GLN LEU ARG TYR LEU ASN LEU SER SEQRES 22 B 811 SER THR SER LEU ARG LYS ILE ASN ALA ALA TRP PHE LYS SEQRES 23 B 811 ASN MET PRO HIS LEU LYS VAL LEU ASP LEU GLU PHE ASN SEQRES 24 B 811 TYR LEU VAL GLY GLU ILE ALA SER GLY ALA PHE LEU THR SEQRES 25 B 811 MET LEU PRO ARG LEU GLU ILE LEU ASP LEU SER PHE ASN SEQRES 26 B 811 TYR ILE LYS GLY SER TYR PRO GLN HIS ILE ASN ILE SER SEQRES 27 B 811 ARG ASN PHE SER LYS LEU LEU SER LEU ARG ALA LEU HIS SEQRES 28 B 811 LEU ARG GLY TYR VAL PHE GLN GLU LEU ARG GLU ASP ASP SEQRES 29 B 811 PHE GLN PRO LEU MET GLN LEU PRO ASN LEU SER THR ILE SEQRES 30 B 811 ASN LEU GLY ILE ASN PHE ILE LYS GLN ILE ASP PHE LYS SEQRES 31 B 811 LEU PHE GLN ASN PHE SER ASN LEU GLU ILE ILE TYR LEU SEQRES 32 B 811 SER GLU ASN ARG ILE SER PRO LEU VAL LYS ASP THR ARG SEQRES 33 B 811 GLN SER TYR ALA ASN SER SER SER PHE GLN ARG HIS ILE SEQRES 34 B 811 ARG LYS ARG ARG SER THR ASP PHE GLU PHE ASP PRO HIS SEQRES 35 B 811 SER ASN PHE TYR HIS PHE THR ARG PRO LEU ILE LYS PRO SEQRES 36 B 811 GLN CYS ALA ALA TYR GLY LYS ALA LEU ASP LEU SER LEU SEQRES 37 B 811 ASN SER ILE PHE PHE ILE GLY PRO ASN GLN PHE GLU ASN SEQRES 38 B 811 LEU PRO ASP ILE ALA CYS LEU ASN LEU SER ALA ASN SER SEQRES 39 B 811 ASN ALA GLN VAL LEU SER GLY THR GLU PHE SER ALA ILE SEQRES 40 B 811 PRO HIS VAL LYS TYR LEU ASP LEU THR ASN ASN ARG LEU SEQRES 41 B 811 ASP PHE ASP ASN ALA SER ALA LEU THR GLU LEU SER ASP SEQRES 42 B 811 LEU GLU VAL LEU ASP LEU SER TYR ASN SER HIS TYR PHE SEQRES 43 B 811 ARG ILE ALA GLY VAL THR HIS HIS LEU GLU PHE ILE GLN SEQRES 44 B 811 ASN PHE THR ASN LEU LYS VAL LEU ASN LEU SER HIS ASN SEQRES 45 B 811 ASN ILE TYR THR LEU THR ASP LYS TYR ASN LEU GLU SER SEQRES 46 B 811 LYS SER LEU VAL GLU LEU VAL PHE SER GLY ASN ARG LEU SEQRES 47 B 811 ASP ILE LEU TRP ASN ASP ASP ASP ASN ARG TYR ILE SER SEQRES 48 B 811 ILE PHE LYS GLY LEU LYS ASN LEU THR ARG LEU ASP LEU SEQRES 49 B 811 SER LEU ASN ARG LEU LYS HIS ILE PRO ASN GLU ALA PHE SEQRES 50 B 811 LEU ASN LEU PRO ALA SER LEU THR GLU LEU HIS ILE ASN SEQRES 51 B 811 ASP ASN MET LEU LYS PHE PHE ASN TRP THR LEU LEU GLN SEQRES 52 B 811 GLN PHE PRO ARG LEU GLU LEU LEU ASP LEU ARG GLY ASN SEQRES 53 B 811 LYS LEU LEU PHE LEU THR ASP SER LEU SER ASP PHE THR SEQRES 54 B 811 SER SER LEU ARG THR LEU LEU LEU SER HIS ASN ARG ILE SEQRES 55 B 811 SER HIS LEU PRO SER GLY PHE LEU SER GLU VAL SER SER SEQRES 56 B 811 LEU LYS HIS LEU ASP LEU SER SER ASN LEU LEU LYS THR SEQRES 57 B 811 ILE ASN LYS SER ALA LEU GLU THR LYS THR THR THR LYS SEQRES 58 B 811 LEU SER MET LEU GLU LEU HIS GLY ASN PRO PHE GLU CYS SEQRES 59 B 811 THR CYS ASP ILE GLY ASP PHE ARG ARG TRP MET ASP GLU SEQRES 60 B 811 HIS LEU ASN VAL LYS ILE PRO ARG LEU VAL ASP VAL ILE SEQRES 61 B 811 CYS ALA SER PRO GLY ASP GLN ARG GLY LYS SER ILE VAL SEQRES 62 B 811 SER LEU GLU LEU THR THR CYS VAL SER ASP VAL THR GLU SEQRES 63 B 811 PHE LEU VAL PRO ARG HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET MAN E 5 11 HET MAN E 6 11 HET MAN E 7 11 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET MAN I 4 11 HET MAN I 5 11 HET MAN I 6 11 HET MAN I 7 11 HET JRI A 901 28 HET NAG A 902 14 HET NAG A 903 14 HET NAG A 904 14 HET NAG A 905 14 HET NAG A 906 14 HET NAG A 907 14 HET NAG A 908 14 HET NAG A 909 14 HET NAG A 910 14 HET JRI B 901 28 HET NAG B 902 14 HET NAG B 904 14 HET NAG B 905 14 HET NAG B 906 14 HET NAG B 907 14 HET NAG B 908 14 HET NAG B 909 14 HET NAG B 910 14 HET NAG B 911 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM JRI (2R,6R)-4-(8-CYANOQUINOLIN-5-YL)-N-[(3S,4R)-4- HETNAM 2 JRI FLUORANYLPYRROLIDIN-3-YL]-6-METHYL-MORPHOLINE-2- HETNAM 3 JRI CARBOXAMIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 30(C8 H15 N O6) FORMUL 3 BMA 4(C6 H12 O6) FORMUL 3 MAN 11(C6 H12 O6) FORMUL 9 JRI 2(C20 H22 F N5 O2) HELIX 1 AA1 THR A 162 SER A 167 1 6 HELIX 2 AA2 LEU A 323 SER A 329 1 7 HELIX 3 AA3 ALA A 331 MET A 335 5 5 HELIX 4 AA4 SER A 360 SER A 364 5 5 HELIX 5 AA5 ARG A 383 MET A 391 5 9 HELIX 6 AA6 PHE A 411 GLN A 415 5 5 HELIX 7 AA7 LYS A 476 ALA A 481 1 6 HELIX 8 AA8 LEU A 577 ASN A 582 5 6 HELIX 9 AA9 ARG A 619 ASN A 625 1 7 HELIX 10 AB1 PRO A 655 LEU A 660 1 6 HELIX 11 AB2 ASN A 680 PHE A 687 5 8 HELIX 12 AB3 CYS A 778 GLY A 781 5 4 HELIX 13 AB4 ASP A 782 HIS A 790 1 9 HELIX 14 AB5 THR B 162 SER B 167 1 6 HELIX 15 AB6 GLU B 239 LYS B 243 5 5 HELIX 16 AB7 ARG B 280 GLN B 284 5 5 HELIX 17 AB8 LEU B 323 SER B 329 1 7 HELIX 18 AB9 ALA B 331 MET B 335 5 5 HELIX 19 AC1 SER B 360 SER B 364 5 5 HELIX 20 AC2 PHE B 387 GLN B 392 1 6 HELIX 21 AC3 PHE B 411 ASN B 416 5 6 HELIX 22 AC4 LYS B 476 ALA B 481 1 6 HELIX 23 AC5 LEU B 577 GLN B 581 5 5 HELIX 24 AC6 ARG B 619 ASN B 625 1 7 HELIX 25 AC7 PRO B 655 LEU B 660 1 6 HELIX 26 AC8 ASN B 680 PHE B 687 5 8 HELIX 27 AC9 ILE B 780 HIS B 790 1 11 HELIX 28 AD1 ARG B 797 VAL B 801 5 5 SHEET 1 AA1 3 VAL A 45 GLU A 48 0 SHEET 2 AA1 3 VAL A 65 ASP A 69 1 O ASP A 69 N ALA A 47 SHEET 3 AA1 3 LYS A 91 ILE A 92 1 N LYS A 91 O THR A 66 SHEET 1 AA2 2 HIS A 77 ILE A 78 0 SHEET 2 AA2 2 ASN A 115 ILE A 116 1 O ASN A 115 N ILE A 78 SHEET 1 AA324 GLU A 129 LEU A 131 0 SHEET 2 AA324 GLU A 150 SER A 152 1 O SER A 152 N LEU A 130 SHEET 3 AA324 ASN A 174 TYR A 176 1 O ASN A 174 N LEU A 151 SHEET 4 AA324 LEU A 205 SER A 207 1 O SER A 207 N LEU A 175 SHEET 5 AA324 LYS A 226 PHE A 228 1 O LYS A 226 N LEU A 206 SHEET 6 AA324 LEU A 250 ASP A 252 1 O LEU A 250 N LEU A 227 SHEET 7 AA324 TYR A 291 ASN A 293 1 O ASN A 293 N LEU A 251 SHEET 8 AA324 VAL A 315 ASP A 317 1 O ASP A 317 N LEU A 292 SHEET 9 AA324 ILE A 341 ASP A 343 1 O ASP A 343 N LEU A 316 SHEET 10 AA324 ALA A 371 HIS A 373 1 O HIS A 373 N LEU A 342 SHEET 11 AA324 THR A 398 ASN A 400 1 O THR A 398 N LEU A 372 SHEET 12 AA324 ILE A 422 TYR A 424 1 O TYR A 424 N ILE A 399 SHEET 13 AA324 ALA A 485 ASP A 487 1 O ALA A 485 N ILE A 423 SHEET 14 AA324 CYS A 509 ASN A 511 1 O ASN A 511 N LEU A 486 SHEET 15 AA324 TYR A 534 ASP A 536 1 O ASP A 536 N LEU A 510 SHEET 16 AA324 VAL A 558 ASP A 560 1 O ASP A 560 N LEU A 535 SHEET 17 AA324 VAL A 588 ASN A 590 1 O ASN A 590 N LEU A 559 SHEET 18 AA324 GLU A 612 VAL A 614 1 O VAL A 614 N LEU A 589 SHEET 19 AA324 ARG A 643 ASP A 645 1 O ASP A 645 N LEU A 613 SHEET 20 AA324 GLU A 668 HIS A 670 1 O HIS A 670 N LEU A 644 SHEET 21 AA324 LEU A 692 ASP A 694 1 O ASP A 694 N LEU A 669 SHEET 22 AA324 THR A 716 LEU A 718 1 O LEU A 718 N LEU A 693 SHEET 23 AA324 HIS A 740 ASP A 742 1 O HIS A 740 N LEU A 717 SHEET 24 AA324 MET A 766 GLU A 768 1 O MET A 766 N LEU A 741 SHEET 1 AA4 2 ASN A 160 ILE A 161 0 SHEET 2 AA4 2 ASN A 191 ILE A 192 1 O ASN A 191 N ILE A 161 SHEET 1 AA5 2 TYR A 236 ILE A 237 0 SHEET 2 AA5 2 ASN A 277 ILE A 278 1 O ASN A 277 N ILE A 237 SHEET 1 AA6 2 GLU A 381 LEU A 382 0 SHEET 2 AA6 2 GLN A 408 ILE A 409 1 O GLN A 408 N LEU A 382 SHEET 1 AA728 ASP B 37 GLN B 41 0 SHEET 2 AA728 SER B 44 GLU B 48 -1 O GLU B 48 N ASP B 37 SHEET 3 AA728 VAL B 65 ASP B 69 1 O THR B 66 N VAL B 45 SHEET 4 AA728 LYS B 91 ILE B 92 1 O LYS B 91 N LEU B 68 SHEET 5 AA728 GLU B 129 LEU B 131 1 O LEU B 131 N ILE B 92 SHEET 6 AA728 GLU B 150 SER B 152 1 O GLU B 150 N LEU B 130 SHEET 7 AA728 ASN B 174 TYR B 176 1 O TYR B 176 N LEU B 151 SHEET 8 AA728 LEU B 205 SER B 207 1 O LEU B 205 N LEU B 175 SHEET 9 AA728 LYS B 226 PHE B 228 1 O PHE B 228 N LEU B 206 SHEET 10 AA728 LEU B 250 ASP B 252 1 O LEU B 250 N LEU B 227 SHEET 11 AA728 TYR B 291 ASN B 293 1 O ASN B 293 N LEU B 251 SHEET 12 AA728 VAL B 315 ASP B 317 1 O VAL B 315 N LEU B 292 SHEET 13 AA728 ILE B 341 ASP B 343 1 O ASP B 343 N LEU B 316 SHEET 14 AA728 ALA B 371 HIS B 373 1 O HIS B 373 N LEU B 342 SHEET 15 AA728 THR B 398 ASN B 400 1 O ASN B 400 N LEU B 372 SHEET 16 AA728 ILE B 422 TYR B 424 1 O TYR B 424 N ILE B 399 SHEET 17 AA728 ALA B 485 ASP B 487 1 O ASP B 487 N ILE B 423 SHEET 18 AA728 CYS B 509 ASN B 511 1 O ASN B 511 N LEU B 486 SHEET 19 AA728 TYR B 534 ASP B 536 1 O TYR B 534 N LEU B 510 SHEET 20 AA728 VAL B 558 ASP B 560 1 O VAL B 558 N LEU B 535 SHEET 21 AA728 VAL B 588 ASN B 590 1 O VAL B 588 N LEU B 559 SHEET 22 AA728 GLU B 612 VAL B 614 1 O GLU B 612 N LEU B 589 SHEET 23 AA728 ARG B 643 ASP B 645 1 O ARG B 643 N LEU B 613 SHEET 24 AA728 GLU B 668 HIS B 670 1 O HIS B 670 N LEU B 644 SHEET 25 AA728 LEU B 692 ASP B 694 1 O ASP B 694 N LEU B 669 SHEET 26 AA728 THR B 716 LEU B 718 1 O THR B 716 N LEU B 693 SHEET 27 AA728 HIS B 740 ASP B 742 1 O HIS B 740 N LEU B 717 SHEET 28 AA728 MET B 766 GLU B 768 1 O MET B 766 N LEU B 741 SHEET 1 AA8 2 HIS B 77 ILE B 78 0 SHEET 2 AA8 2 ASN B 115 ILE B 116 1 O ASN B 115 N ILE B 78 SHEET 1 AA9 2 ASN B 160 ILE B 161 0 SHEET 2 AA9 2 ASN B 191 ILE B 192 1 O ASN B 191 N ILE B 161 SHEET 1 AB1 2 TYR B 236 ILE B 237 0 SHEET 2 AB1 2 ASN B 277 ILE B 278 1 O ASN B 277 N ILE B 237 SHEET 1 AB2 2 GLU B 381 LEU B 382 0 SHEET 2 AB2 2 GLN B 408 ILE B 409 1 O GLN B 408 N LEU B 382 SHEET 1 AB3 2 PHE B 774 GLU B 775 0 SHEET 2 AB3 2 CYS B 803 SER B 805 1 O ALA B 804 N PHE B 774 SSBOND 1 CYS A 36 CYS A 49 1555 1555 2.05 SSBOND 2 CYS A 181 CYS A 187 1555 1555 2.04 SSBOND 3 CYS A 257 CYS A 270 1555 1555 2.05 SSBOND 4 CYS A 260 CYS A 267 1555 1555 2.07 SSBOND 5 CYS A 479 CYS A 509 1555 1555 2.03 SSBOND 6 CYS A 776 CYS A 803 1555 1555 2.04 SSBOND 7 CYS B 36 CYS B 49 1555 1555 2.05 SSBOND 8 CYS B 181 CYS B 187 1555 1555 2.05 SSBOND 9 CYS B 257 CYS B 270 1555 1555 2.05 SSBOND 10 CYS B 260 CYS B 267 1555 1555 2.09 SSBOND 11 CYS B 479 CYS B 509 1555 1555 2.08 SSBOND 12 CYS B 776 CYS B 803 1555 1555 2.06 LINK ND2 ASN A 247 C1 NAG A 902 1555 1555 1.45 LINK ND2 ASN A 285 C1 NAG A 903 1555 1555 1.45 LINK ND2 ASN A 293 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 362 C1 NAG A 904 1555 1555 1.44 LINK ND2 ASN A 395 C1 NAG A 909 1555 1555 1.46 LINK ND2 ASN A 416 C1 NAG A 908 1555 1555 1.47 LINK ND2 ASN A 511 C1 NAG D 1 1555 1555 1.41 LINK ND2 ASN A 546 C1 NAG A 905 1555 1555 1.44 LINK ND2 ASN A 582 C1 NAG A 906 1555 1555 1.44 LINK ND2 ASN A 590 C1 NAG E 1 1555 1555 1.49 LINK ND2 ASN A 640 C1 NAG A 907 1555 1555 1.45 LINK ND2 ASN A 680 C1 NAG A 910 1555 1555 1.45 LINK ND2 ASN B 88 C1 NAG B 909 1555 1555 1.46 LINK ND2 ASN B 247 C1 NAG B 902 1555 1555 1.46 LINK ND2 ASN B 285 C1 NAG B 904 1555 1555 1.44 LINK ND2 ASN B 293 C1 NAG G 1 1555 1555 1.19 LINK ND2 ASN B 362 C1 NAG B 905 1555 1555 1.44 LINK ND2 ASN B 395 C1 NAG B 910 1555 1555 1.46 LINK ND2 ASN B 511 C1 NAG H 1 1555 1555 1.47 LINK ND2 ASN B 546 C1 NAG B 906 1555 1555 1.46 LINK ND2 ASN B 582 C1 NAG B 907 1555 1555 1.45 LINK ND2 ASN B 590 C1 NAG I 1 1555 1555 1.43 LINK ND2 ASN B 640 C1 NAG B 908 1555 1555 1.47 LINK ND2 ASN B 680 C1 NAG B 911 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.43 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 6 1555 1555 1.44 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.41 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.40 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.53 LINK O6 BMA E 3 C1 MAN E 6 1555 1555 1.62 LINK O2 MAN E 4 C1 MAN E 5 1555 1555 1.50 LINK O3 MAN E 6 C1 MAN E 7 1555 1555 1.48 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.69 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.45 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.43 LINK O3 BMA I 3 C1 MAN I 4 1555 1555 1.45 LINK O6 BMA I 3 C1 MAN I 6 1555 1555 1.43 LINK O2 MAN I 4 C1 MAN I 5 1555 1555 1.43 LINK O3 MAN I 6 C1 MAN I 7 1555 1555 1.44 CISPEP 1 TYR A 34 PRO A 35 0 -7.42 CISPEP 2 ASN A 97 PRO A 98 0 -8.85 CISPEP 3 TYR B 34 PRO B 35 0 9.26 CISPEP 4 ASN B 97 PRO B 98 0 -14.01 CISPEP 5 SER B 805 PRO B 806 0 -3.63 CRYST1 145.640 97.570 143.810 90.00 104.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006866 0.000000 0.001833 0.00000 SCALE2 0.000000 0.010249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007197 0.00000