data_7YVW # _entry.id 7YVW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YVW pdb_00007yvw 10.2210/pdb7yvw/pdb WWPDB D_1300031584 ? ? BMRB 36507 ? 10.13018/BMR36507 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2023-06-14 2 'Structure model' 1 1 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7YVW _pdbx_database_status.recvd_initial_deposition_date 2022-08-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR determination of the 2:1 binding motif structure involving cytosine flipping out for the recognition of the CGG/CGG triad DNA' _pdbx_database_related.db_id 36507 _pdbx_database_related.content_type unspecified # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 2 kojima-chojiro-xk@ynu.ac.jp Chojiro Kojima ? 'principal investigator/group leader' 0000-0003-2723-8249 3 nakatani@sanken.osaka-u.ac.jp Kazuhiko Nakatani ? 'principal investigator/group leader' 0000-0002-1705-5265 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Furuita, K.' 1 ? 'Yamada, T.' 2 ? 'Sakurabayashi, S.' 3 ? 'Nomura, M.' 4 ? 'Kojima, C.' 5 ? 'Nakatani, K.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 50 _citation.language ? _citation.page_first 9621 _citation.page_last 9631 _citation.title 'NMR determination of the 2:1 binding complex of naphthyridine carbamate dimer (NCD) and CGG/CGG triad in double-stranded DNA.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkac740 _citation.pdbx_database_id_PubMed 36095126 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yamada, T.' 1 0000-0003-3275-415X primary 'Furuita, K.' 2 ? primary 'Sakurabayashi, S.' 3 0000-0001-6561-2356 primary 'Nomura, M.' 4 ? primary 'Kojima, C.' 5 ? primary 'Nakatani, K.' 6 0000-0002-1705-5265 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*AP*AP*CP*GP*GP*AP*AP*TP*G)-3') ; 3382.236 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*AP*TP*TP*CP*GP*GP*TP*TP*AP*G)-3') ; 3364.208 1 ? ? ? ? 3 non-polymer syn '3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate' 503.553 2 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DA)(DC)(DG)(DG)(DA)(DA)(DT)(DG)' CTAACGGAATG A ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DT)(DT)(DC)(DG)(DG)(DT)(DT)(DA)(DG)' CATTCGGTTAG B ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name '3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate' _pdbx_entity_nonpoly.comp_id B2R # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DA n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DA n 1 9 DA n 1 10 DT n 1 11 DG n 2 1 DC n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DC n 2 6 DG n 2 7 DG n 2 8 DT n 2 9 DT n 2 10 DA n 2 11 DG n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 11 'synthetic construct' ? 32630 ? 2 1 sample 1 11 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight B2R non-polymer . '3-[3-[(7-methyl-1,8-naphthyridin-2-yl)carbamoyloxy]propylamino]propyl ~{N}-(7-methyl-1,8-naphthyridin-2-yl)carbamate' 'Naphthyridine Carbamate Dimer' 'C26 H29 N7 O4' 503.553 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DT 10 10 10 DT DT A . n A 1 11 DG 11 11 11 DG DG A . n B 2 1 DC 1 12 12 DC DC B . n B 2 2 DA 2 13 13 DA DA B . n B 2 3 DT 3 14 14 DT DT B . n B 2 4 DT 4 15 15 DT DT B . n B 2 5 DC 5 16 16 DC DC B . n B 2 6 DG 6 17 17 DG DG B . n B 2 7 DG 7 18 18 DG DG B . n B 2 8 DT 8 19 19 DT DT B . n B 2 9 DT 9 20 20 DT DT B . n B 2 10 DA 10 21 21 DA DA B . n B 2 11 DG 11 22 22 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 B2R 1 101 23 B2R B2R A . D 3 B2R 1 102 24 B2R B2R A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YVW _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7YVW _struct.title 'NMR determination of the 2:1 binding motif structure involving cytosine flipping out for the recognition of the CGG/CGG triad DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YVW _struct_keywords.text 'GG mismatch, drug, complex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7YVW 7YVW ? 1 ? 1 2 PDB 7YVW 7YVW ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7YVW A 1 ? 11 ? 7YVW 1 ? 11 ? 1 11 2 2 7YVW B 1 ? 11 ? 7YVW 12 ? 22 ? 12 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1330 ? 1 MORE -6 ? 1 'SSA (A^2)' 4520 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'NMR Distance Restraints' ? 2 1 'isothermal titration calorimetry' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? A DC 1 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 2 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 10 N6 ? ? A DT 2 B DA 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 9 N3 ? ? A DA 3 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 9 O4 ? ? A DA 3 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 8 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 8 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 9 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 10 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 10 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 11 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 7YVW _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 7YVW _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 30 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7YVW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.5 mM NCD-GG1, 20 mM sodium phosphate, 100 mM sodium chloride, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label unlabeled_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 NCD-GG1 2.5 ? mM 'natural abundance' 1 'sodium phosphate' 20 ? mM 'natural abundance' 1 'sodium chloride' 100 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 283 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY (200 ms)' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 2 isotropic 3 1 1 '2D 1H-31P HSQC' 1 isotropic 4 1 1 '2D DQF-COSY' 1 isotropic 5 1 1 '2D TOCSY' 1 isotropic 6 1 1 '2D NOESY (30 ms)' 1 isotropic # _pdbx_nmr_refine.entry_id 7YVW _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection XwinNMR ? 'Bruker Biospin' 2 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 3 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 4 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 5 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal B2R C6 C Y N 1 B2R N1 N Y N 2 B2R C2 C Y N 3 B2R C5 C Y N 4 B2R C4 C Y N 5 B2R C3 C Y N 6 B2R C9 C Y N 7 B2R C7 C Y N 8 B2R C11 C N N 9 B2R N8 N Y N 10 B2R C10 C Y N 11 B2R N23 N N N 12 B2R C24 C N N 13 B2R O36 O N N 14 B2R O25 O N N 15 B2R C26 C N N 16 B2R C27 C N N 17 B2R C28 C N N 18 B2R N35 N N N 19 B2R C34 C N N 20 B2R C33 C N N 21 B2R C32 C N N 22 B2R O31 O N N 23 B2R C30 C N N 24 B2R O37 O N N 25 B2R N29 N N N 26 B2R C13 C Y N 27 B2R C14 C Y N 28 B2R C15 C Y N 29 B2R C20 C Y N 30 B2R C16 C Y N 31 B2R C17 C Y N 32 B2R C18 C Y N 33 B2R C22 C N N 34 B2R N19 N Y N 35 B2R C21 C Y N 36 B2R N12 N Y N 37 B2R H1 H N N 38 B2R H2 H N N 39 B2R H3 H N N 40 B2R H4 H N N 41 B2R H5 H N N 42 B2R H6 H N N 43 B2R H7 H N N 44 B2R H8 H N N 45 B2R H9 H N N 46 B2R H10 H N N 47 B2R H11 H N N 48 B2R H12 H N N 49 B2R H13 H N N 50 B2R H14 H N N 51 B2R H30 H N N 52 B2R H16 H N N 53 B2R H17 H N N 54 B2R H18 H N N 55 B2R H19 H N N 56 B2R H20 H N N 57 B2R H21 H N N 58 B2R H22 H N N 59 B2R H23 H N N 60 B2R H24 H N N 61 B2R H25 H N N 62 B2R H26 H N N 63 B2R H27 H N N 64 B2R H28 H N N 65 B2R H29 H N N 66 DA OP3 O N N 67 DA P P N N 68 DA OP1 O N N 69 DA OP2 O N N 70 DA "O5'" O N N 71 DA "C5'" C N N 72 DA "C4'" C N R 73 DA "O4'" O N N 74 DA "C3'" C N S 75 DA "O3'" O N N 76 DA "C2'" C N N 77 DA "C1'" C N R 78 DA N9 N Y N 79 DA C8 C Y N 80 DA N7 N Y N 81 DA C5 C Y N 82 DA C6 C Y N 83 DA N6 N N N 84 DA N1 N Y N 85 DA C2 C Y N 86 DA N3 N Y N 87 DA C4 C Y N 88 DA HOP3 H N N 89 DA HOP2 H N N 90 DA "H5'" H N N 91 DA "H5''" H N N 92 DA "H4'" H N N 93 DA "H3'" H N N 94 DA "HO3'" H N N 95 DA "H2'" H N N 96 DA "H2''" H N N 97 DA "H1'" H N N 98 DA H8 H N N 99 DA H61 H N N 100 DA H62 H N N 101 DA H2 H N N 102 DC OP3 O N N 103 DC P P N N 104 DC OP1 O N N 105 DC OP2 O N N 106 DC "O5'" O N N 107 DC "C5'" C N N 108 DC "C4'" C N R 109 DC "O4'" O N N 110 DC "C3'" C N S 111 DC "O3'" O N N 112 DC "C2'" C N N 113 DC "C1'" C N R 114 DC N1 N N N 115 DC C2 C N N 116 DC O2 O N N 117 DC N3 N N N 118 DC C4 C N N 119 DC N4 N N N 120 DC C5 C N N 121 DC C6 C N N 122 DC HOP3 H N N 123 DC HOP2 H N N 124 DC "H5'" H N N 125 DC "H5''" H N N 126 DC "H4'" H N N 127 DC "H3'" H N N 128 DC "HO3'" H N N 129 DC "H2'" H N N 130 DC "H2''" H N N 131 DC "H1'" H N N 132 DC H41 H N N 133 DC H42 H N N 134 DC H5 H N N 135 DC H6 H N N 136 DG OP3 O N N 137 DG P P N N 138 DG OP1 O N N 139 DG OP2 O N N 140 DG "O5'" O N N 141 DG "C5'" C N N 142 DG "C4'" C N R 143 DG "O4'" O N N 144 DG "C3'" C N S 145 DG "O3'" O N N 146 DG "C2'" C N N 147 DG "C1'" C N R 148 DG N9 N Y N 149 DG C8 C Y N 150 DG N7 N Y N 151 DG C5 C Y N 152 DG C6 C N N 153 DG O6 O N N 154 DG N1 N N N 155 DG C2 C N N 156 DG N2 N N N 157 DG N3 N N N 158 DG C4 C Y N 159 DG HOP3 H N N 160 DG HOP2 H N N 161 DG "H5'" H N N 162 DG "H5''" H N N 163 DG "H4'" H N N 164 DG "H3'" H N N 165 DG "HO3'" H N N 166 DG "H2'" H N N 167 DG "H2''" H N N 168 DG "H1'" H N N 169 DG H8 H N N 170 DG H1 H N N 171 DG H21 H N N 172 DG H22 H N N 173 DT OP3 O N N 174 DT P P N N 175 DT OP1 O N N 176 DT OP2 O N N 177 DT "O5'" O N N 178 DT "C5'" C N N 179 DT "C4'" C N R 180 DT "O4'" O N N 181 DT "C3'" C N S 182 DT "O3'" O N N 183 DT "C2'" C N N 184 DT "C1'" C N R 185 DT N1 N N N 186 DT C2 C N N 187 DT O2 O N N 188 DT N3 N N N 189 DT C4 C N N 190 DT O4 O N N 191 DT C5 C N N 192 DT C7 C N N 193 DT C6 C N N 194 DT HOP3 H N N 195 DT HOP2 H N N 196 DT "H5'" H N N 197 DT "H5''" H N N 198 DT "H4'" H N N 199 DT "H3'" H N N 200 DT "HO3'" H N N 201 DT "H2'" H N N 202 DT "H2''" H N N 203 DT "H1'" H N N 204 DT H3 H N N 205 DT H71 H N N 206 DT H72 H N N 207 DT H73 H N N 208 DT H6 H N N 209 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal B2R O37 C30 doub N N 1 B2R C33 C34 sing N N 2 B2R C33 C32 sing N N 3 B2R N35 C34 sing N N 4 B2R N35 C28 sing N N 5 B2R C30 O31 sing N N 6 B2R C30 N29 sing N N 7 B2R O31 C32 sing N N 8 B2R C14 C15 doub Y N 9 B2R C14 C13 sing Y N 10 B2R C15 C20 sing Y N 11 B2R C27 C28 sing N N 12 B2R C27 C26 sing N N 13 B2R N29 C13 sing N N 14 B2R C13 N12 doub Y N 15 B2R C20 C16 doub Y N 16 B2R C20 C21 sing Y N 17 B2R N12 C21 sing Y N 18 B2R C26 O25 sing N N 19 B2R C16 C17 sing Y N 20 B2R C21 N19 doub Y N 21 B2R O25 C24 sing N N 22 B2R C17 C18 doub Y N 23 B2R N19 C18 sing Y N 24 B2R C24 O36 doub N N 25 B2R C24 N23 sing N N 26 B2R C18 C22 sing N N 27 B2R N23 C2 sing N N 28 B2R C2 C3 doub Y N 29 B2R C2 N1 sing Y N 30 B2R C3 C4 sing Y N 31 B2R N1 C10 doub Y N 32 B2R C10 N8 sing Y N 33 B2R C10 C9 sing Y N 34 B2R C4 C9 doub Y N 35 B2R N8 C7 doub Y N 36 B2R C9 C5 sing Y N 37 B2R C7 C6 sing Y N 38 B2R C7 C11 sing N N 39 B2R C5 C6 doub Y N 40 B2R C6 H1 sing N N 41 B2R C5 H2 sing N N 42 B2R C4 H3 sing N N 43 B2R C3 H4 sing N N 44 B2R C11 H5 sing N N 45 B2R C11 H6 sing N N 46 B2R C11 H7 sing N N 47 B2R N23 H8 sing N N 48 B2R C26 H9 sing N N 49 B2R C26 H10 sing N N 50 B2R C27 H11 sing N N 51 B2R C27 H12 sing N N 52 B2R C28 H13 sing N N 53 B2R C28 H14 sing N N 54 B2R N35 H30 sing N N 55 B2R C34 H16 sing N N 56 B2R C34 H17 sing N N 57 B2R C33 H18 sing N N 58 B2R C33 H19 sing N N 59 B2R C32 H20 sing N N 60 B2R C32 H21 sing N N 61 B2R N29 H22 sing N N 62 B2R C14 H23 sing N N 63 B2R C15 H24 sing N N 64 B2R C16 H25 sing N N 65 B2R C17 H26 sing N N 66 B2R C22 H27 sing N N 67 B2R C22 H28 sing N N 68 B2R C22 H29 sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 # _ndb_struct_conf_na.entry_id 7YVW _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 -0.017 -0.260 -0.374 3.055 2.137 -1.538 1 A_DC1:DG22_B A 1 ? B 22 ? 19 1 1 A DT 2 1_555 B DA 10 1_555 0.116 -0.222 -0.217 1.938 -1.902 -3.553 2 A_DT2:DA21_B A 2 ? B 21 ? 20 1 1 A DA 3 1_555 B DT 9 1_555 -0.077 -0.185 -0.188 -0.785 4.702 0.536 3 A_DA3:DT20_B A 3 ? B 20 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 -0.125 -0.017 -0.212 -0.690 3.882 6.477 4 A_DA4:DT19_B A 4 ? B 19 ? 20 1 1 A DA 8 1_555 B DT 4 1_555 0.043 -0.217 -0.177 0.035 2.132 2.105 5 A_DA8:DT15_B A 8 ? B 15 ? 20 1 1 A DA 9 1_555 B DT 3 1_555 -0.261 0.001 -0.090 1.454 3.161 -0.536 6 A_DA9:DT14_B A 9 ? B 14 ? 20 1 1 A DT 10 1_555 B DA 2 1_555 -0.295 -0.044 -0.140 -0.955 1.685 -4.561 7 A_DT10:DA13_B A 10 ? B 13 ? 20 1 1 A DG 11 1_555 B DC 1 1_555 -0.369 -0.325 -0.220 -4.166 -0.524 -0.210 8 A_DG11:DC12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DT 2 1_555 B DA 10 1_555 -0.073 -0.613 3.561 3.283 -2.265 32.046 -0.663 0.769 3.570 -4.083 -5.919 32.287 1 AA_DC1DT2:DA21DG22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DT 2 1_555 B DA 10 1_555 A DA 3 1_555 B DT 9 1_555 0.614 -0.603 3.418 -1.797 2.335 37.217 -1.261 -1.205 3.343 3.652 2.811 37.330 2 AA_DT2DA3:DT20DA21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DA 3 1_555 B DT 9 1_555 A DA 4 1_555 B DT 8 1_555 0.328 -0.697 3.546 0.130 0.477 35.953 -1.203 -0.512 3.538 0.773 -0.211 35.956 3 AA_DA3DA4:DT19DT20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DA 8 1_555 B DT 4 1_555 A DA 9 1_555 B DT 3 1_555 -0.284 -0.950 3.381 -1.482 -1.575 31.524 -1.440 0.235 3.433 -2.894 2.724 31.597 4 AA_DA8DA9:DT14DT15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DA 9 1_555 B DT 3 1_555 A DT 10 1_555 B DA 2 1_555 -0.239 -0.980 3.311 0.306 3.969 31.639 -2.502 0.490 3.165 7.243 -0.558 31.882 5 AA_DA9DT10:DA13DT14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DT 10 1_555 B DA 2 1_555 A DG 11 1_555 B DC 1 1_555 0.225 -0.586 3.297 0.445 2.311 35.932 -1.278 -0.301 3.256 3.740 -0.720 36.006 6 AA_DT10DG11:DC12DA13_BB A 10 ? B 13 ? A 11 ? B 12 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 26000007 1 'Japan Society for the Promotion of Science (JSPS)' Japan 19H00924 2 'Japan Society for the Promotion of Science (JSPS)' Japan 17K14516 3 'Japan Society for the Promotion of Science (JSPS)' Japan 19K05963 4 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id B2R _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id B2R _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 DRX ? Bruker 800 ? 2 AVANCE ? Bruker 500 ? # _atom_sites.entry_id 7YVW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_