HEADER TRANSFERASE 20-AUG-22 7YVY TITLE CRYSTAL STRUCTURE OF THIOLASE PFC_04095 FROM PYROCOCCUS FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL-COA ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS COM1; SOURCE 3 ORGANISM_TAXID: 1185654; SOURCE 4 GENE: PFC_04095; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PYROCOCCUS FURIOSUS, ACETOACETYL-COA THIOLASE, ACETYL-COA KEYWDS 2 ACETYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SINGH,A.K.DAS REVDAT 1 06-SEP-23 7YVY 0 JRNL AUTH R.SINGH,A.K.DAS JRNL TITL CRYSTAL STRUCTURE OF THIOLASE PFC_04095 FROM PYROCOCCUS JRNL TITL 2 FURIOSUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 36654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0300 - 6.3500 1.00 2740 147 0.1694 0.1955 REMARK 3 2 6.3400 - 5.0400 1.00 2717 145 0.1975 0.2323 REMARK 3 3 5.0400 - 4.4000 1.00 2676 160 0.1713 0.2089 REMARK 3 4 4.4000 - 4.0000 1.00 2702 132 0.1727 0.2223 REMARK 3 5 4.0000 - 3.7100 0.99 2692 132 0.2119 0.2888 REMARK 3 6 3.7100 - 3.4900 0.99 2680 133 0.2442 0.2840 REMARK 3 7 3.4900 - 3.3200 0.99 2654 168 0.2583 0.2912 REMARK 3 8 3.3200 - 3.1700 0.99 2676 120 0.2875 0.3600 REMARK 3 9 3.1700 - 3.0500 0.99 2683 124 0.3251 0.4133 REMARK 3 10 3.0500 - 2.9500 0.99 2678 131 0.2855 0.3354 REMARK 3 11 2.9500 - 2.8500 0.99 2661 135 0.2849 0.3522 REMARK 3 12 2.8500 - 2.7700 0.99 2651 144 0.2965 0.3593 REMARK 3 13 2.7700 - 2.7000 0.98 2630 143 0.3441 0.3791 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 25.6710 -33.5530 -7.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.5184 T22: 0.4588 REMARK 3 T33: 0.4969 T12: -0.0130 REMARK 3 T13: -0.0017 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.6306 L22: 0.1392 REMARK 3 L33: -0.1058 L12: 0.2825 REMARK 3 L13: 0.0317 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.0807 S13: 0.1096 REMARK 3 S21: -0.0563 S22: 0.0391 S23: -0.1379 REMARK 3 S31: -0.0687 S32: -0.0110 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-22. REMARK 100 THE DEPOSITION ID IS D_1300031440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ESQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CARBOXYLIC ACIDS, 0.1 M BUFFER REMARK 280 SYSTEM 3 PH 8.5 AND 50 % V/V PRECIPITANT MIX 4. CARBOXYLIC ACIDS: REMARK 280 0.2 M EACH OF SODIUM FORMATE, AMMONIUM ACETATE, SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE, SODIUM POTASSIUM TARTRATE TETRAHYDRATE AND REMARK 280 SODIUM OXAMATE. BUFFER SYSTEM 3: TRIS (BASE); BICINE PH 8.5 REMARK 280 PRECIPITANT MIX 4: MPD_PIK_P3350 (25 % V/V MPD, 25 % PEG 1000, REMARK 280 25 % W/V PEG 3350), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.62300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.74100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.62300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.74100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 52 REMARK 465 TRP A 117 REMARK 465 PRO A 118 REMARK 465 SER A 119 REMARK 465 ASP A 120 REMARK 465 ALA A 121 REMARK 465 THR A 122 REMARK 465 ARG A 123 REMARK 465 TYR A 124 REMARK 465 LEU A 125 REMARK 465 GLY A 126 REMARK 465 TYR A 127 REMARK 465 ALA A 128 REMARK 465 ALA A 129 REMARK 465 ASP A 130 REMARK 465 ALA A 131 REMARK 465 GLU A 132 REMARK 465 TRP A 133 REMARK 465 GLU A 134 REMARK 465 LEU A 135 REMARK 465 GLY B 53 REMARK 465 SER B 54 REMARK 465 PHE B 55 REMARK 465 VAL B 56 REMARK 465 ALA B 116 REMARK 465 TRP B 117 REMARK 465 PRO B 118 REMARK 465 SER B 119 REMARK 465 ASP B 120 REMARK 465 ALA B 121 REMARK 465 THR B 122 REMARK 465 ARG B 123 REMARK 465 TYR B 124 REMARK 465 LEU B 125 REMARK 465 GLY B 126 REMARK 465 TYR B 127 REMARK 465 ALA B 128 REMARK 465 ALA B 129 REMARK 465 ASP B 130 REMARK 465 ALA B 131 REMARK 465 GLU B 132 REMARK 465 TRP B 133 REMARK 465 GLU B 134 REMARK 465 LEU B 135 REMARK 465 MET C 1 REMARK 465 SER C 52 REMARK 465 GLY C 53 REMARK 465 SER C 54 REMARK 465 PHE C 55 REMARK 465 VAL C 56 REMARK 465 ALA C 116 REMARK 465 TRP C 117 REMARK 465 PRO C 118 REMARK 465 SER C 119 REMARK 465 ASP C 120 REMARK 465 ALA C 121 REMARK 465 THR C 122 REMARK 465 ARG C 123 REMARK 465 TYR C 124 REMARK 465 LEU C 125 REMARK 465 GLY C 126 REMARK 465 TYR C 127 REMARK 465 ALA C 128 REMARK 465 ALA C 129 REMARK 465 ASP C 130 REMARK 465 ALA C 131 REMARK 465 GLU C 132 REMARK 465 TRP C 133 REMARK 465 GLU C 134 REMARK 465 LEU C 135 REMARK 465 PHE C 136 REMARK 465 HIS C 137 REMARK 465 VAL C 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 MET A 50 CG SD CE REMARK 470 SER A 54 OG REMARK 470 PHE A 55 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 PHE A 136 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 137 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 GLU A 226 CG CD OE1 OE2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 ASP A 232 CG OD1 OD2 REMARK 470 ARG A 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 MET B 50 CG SD CE REMARK 470 SER B 52 OG REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 PHE B 136 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS B 137 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 ARG B 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 270 CG CD CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 ILE B 312 CG1 CG2 CD1 REMARK 470 ASP B 358 CG OD1 OD2 REMARK 470 GLU B 366 CG CD OE1 OE2 REMARK 470 LYS C 3 CG CD CE NZ REMARK 470 ARG C 19 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 41 CG CD CE NZ REMARK 470 GLU C 57 CG CD OE1 OE2 REMARK 470 GLU C 80 CG CD OE1 OE2 REMARK 470 LYS C 95 CG CD CE NZ REMARK 470 GLU C 102 CG CD OE1 OE2 REMARK 470 ASP C 115 CG OD1 OD2 REMARK 470 LYS C 159 CG CD CE NZ REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 LYS C 184 CG CD CE NZ REMARK 470 GLU C 189 CG CD OE1 OE2 REMARK 470 LYS C 193 CG CD CE NZ REMARK 470 GLU C 222 CG CD OE1 OE2 REMARK 470 LYS C 225 CG CD CE NZ REMARK 470 GLU C 226 CG CD OE1 OE2 REMARK 470 LEU C 227 CG CD1 CD2 REMARK 470 ILE C 229 CG1 CG2 CD1 REMARK 470 LYS C 231 CG CD CE NZ REMARK 470 ASP C 232 CG OD1 OD2 REMARK 470 ARG C 267 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 275 CG CD CE NZ REMARK 470 GLU C 277 CG CD OE1 OE2 REMARK 470 LYS C 303 CG CD CE NZ REMARK 470 LYS C 304 CG CD CE NZ REMARK 470 LYS C 309 CG CD CE NZ REMARK 470 GLU C 355 CG CD OE1 OE2 REMARK 470 ASP C 358 CG OD1 OD2 REMARK 470 GLU C 366 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 291 OG SER B 295 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 56 -48.28 64.60 REMARK 500 GLN A 58 49.08 -89.97 REMARK 500 ASN A 60 58.80 -94.14 REMARK 500 ALA A 82 -136.40 53.34 REMARK 500 CYS A 83 4.02 -67.68 REMARK 500 CYS A 210 -179.91 -170.41 REMARK 500 HIS B 17 79.89 -103.79 REMARK 500 ALA B 82 -129.61 50.62 REMARK 500 ALA B 250 48.03 -91.62 REMARK 500 ASN B 251 10.99 -148.44 REMARK 500 ALA C 82 -143.00 55.53 REMARK 500 THR C 219 -175.99 -170.34 REMARK 500 ASN C 248 99.43 -68.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO C 336 VAL C 337 -149.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YVY A 1 388 UNP I6V154 I6V154_9EURY 1 388 DBREF 7YVY B 1 388 UNP I6V154 I6V154_9EURY 1 388 DBREF 7YVY C 1 388 UNP I6V154 I6V154_9EURY 1 388 SEQRES 1 A 388 MET ARG LYS ALA ILE ILE VAL GLY VAL GLY MET THR PRO SEQRES 2 A 388 VAL GLY GLU HIS TRP ARG SER SER LEU ARG ASP LEU ALA SEQRES 3 A 388 VAL GLU ALA ILE LEU ASN ALA MET ASP ASP ALA GLY ILE SEQRES 4 A 388 ASP LYS VAL ASP SER LEU TYR VAL GLY ASN MET ALA SER SEQRES 5 A 388 GLY SER PHE VAL GLU GLN GLU ASN LEU GLY ALA LEU ILE SEQRES 6 A 388 ALA ASP TRP ALA GLY LEU GLY ASN ILE PRO ALA VAL LYS SEQRES 7 A 388 ILE GLU ALA ALA CYS ALA SER GLY GLY ALA ALA VAL GLN SEQRES 8 A 388 GLU GLY ALA LYS ALA VAL LEU SER GLY LEU GLU ASP VAL SEQRES 9 A 388 VAL LEU VAL VAL GLY VAL GLU LYS MET THR ASP ALA TRP SEQRES 10 A 388 PRO SER ASP ALA THR ARG TYR LEU GLY TYR ALA ALA ASP SEQRES 11 A 388 ALA GLU TRP GLU LEU PHE HIS GLY ALA SER PHE VAL ALA SEQRES 12 A 388 LEU ASN ALA LEU ILE MET ARG LEU TYR MET ASN THR TYR SEQRES 13 A 388 GLY TYR LYS GLU GLU ASP LEU ALA LEU PHE ALA VAL ASN SEQRES 14 A 388 ALA HIS ALA ASN GLY ALA LYS ASN PRO TYR ALA MET PHE SEQRES 15 A 388 LYS LYS PRO ILE THR VAL GLU THR VAL MET LYS SER PRO SEQRES 16 A 388 TYR ILE ALA ASP PRO LEU LYS LEU PHE ASP ALA SER PRO SEQRES 17 A 388 VAL CYS ASP GLY ALA ALA ALA VAL ILE ILE THR THR PRO SEQRES 18 A 388 GLU LYS ALA LYS GLU LEU GLY ILE PRO LYS ASP LYS TRP SEQRES 19 A 388 ILE GLU ILE ALA GLY MET GLY ARG ALA ILE ASP THR ILE SEQRES 20 A 388 ASN LEU ALA ASN ARG GLU ASP PHE LEU THR LEU LYS ALA SEQRES 21 A 388 ALA THR ILE ALA ALA GLU ARG ALA TYR LYS MET ALA GLY SEQRES 22 A 388 VAL LYS PRO GLU ASP VAL ASP PHE PHE GLU VAL HIS ASP SEQRES 23 A 388 ALA PHE THR VAL MET ALA ALA LEU SER LEU GLU ALA LEU SEQRES 24 A 388 GLY VAL ALA LYS LYS GLY GLU GLY ALA LYS LEU ALA ILE SEQRES 25 A 388 GLU GLY GLN ILE ALA ILE ASP GLY ASP TYR PRO ILE GLN SEQRES 26 A 388 THR MET GLY GLY LEU LYS ALA ARG GLY HIS PRO VAL GLY SEQRES 27 A 388 ALA THR GLY VAL TYR GLN VAL VAL GLU ALA VAL LEU GLN SEQRES 28 A 388 LEU ARG GLY GLU ALA PRO ASP GLY ILE GLN VAL PRO ASP SEQRES 29 A 388 ALA GLU VAL GLY LEU THR GLN ASN ILE GLY GLY THR GLY SEQRES 30 A 388 SER ASN ILE THR VAL THR VAL LEU ARG ARG VAL SEQRES 1 B 388 MET ARG LYS ALA ILE ILE VAL GLY VAL GLY MET THR PRO SEQRES 2 B 388 VAL GLY GLU HIS TRP ARG SER SER LEU ARG ASP LEU ALA SEQRES 3 B 388 VAL GLU ALA ILE LEU ASN ALA MET ASP ASP ALA GLY ILE SEQRES 4 B 388 ASP LYS VAL ASP SER LEU TYR VAL GLY ASN MET ALA SER SEQRES 5 B 388 GLY SER PHE VAL GLU GLN GLU ASN LEU GLY ALA LEU ILE SEQRES 6 B 388 ALA ASP TRP ALA GLY LEU GLY ASN ILE PRO ALA VAL LYS SEQRES 7 B 388 ILE GLU ALA ALA CYS ALA SER GLY GLY ALA ALA VAL GLN SEQRES 8 B 388 GLU GLY ALA LYS ALA VAL LEU SER GLY LEU GLU ASP VAL SEQRES 9 B 388 VAL LEU VAL VAL GLY VAL GLU LYS MET THR ASP ALA TRP SEQRES 10 B 388 PRO SER ASP ALA THR ARG TYR LEU GLY TYR ALA ALA ASP SEQRES 11 B 388 ALA GLU TRP GLU LEU PHE HIS GLY ALA SER PHE VAL ALA SEQRES 12 B 388 LEU ASN ALA LEU ILE MET ARG LEU TYR MET ASN THR TYR SEQRES 13 B 388 GLY TYR LYS GLU GLU ASP LEU ALA LEU PHE ALA VAL ASN SEQRES 14 B 388 ALA HIS ALA ASN GLY ALA LYS ASN PRO TYR ALA MET PHE SEQRES 15 B 388 LYS LYS PRO ILE THR VAL GLU THR VAL MET LYS SER PRO SEQRES 16 B 388 TYR ILE ALA ASP PRO LEU LYS LEU PHE ASP ALA SER PRO SEQRES 17 B 388 VAL CYS ASP GLY ALA ALA ALA VAL ILE ILE THR THR PRO SEQRES 18 B 388 GLU LYS ALA LYS GLU LEU GLY ILE PRO LYS ASP LYS TRP SEQRES 19 B 388 ILE GLU ILE ALA GLY MET GLY ARG ALA ILE ASP THR ILE SEQRES 20 B 388 ASN LEU ALA ASN ARG GLU ASP PHE LEU THR LEU LYS ALA SEQRES 21 B 388 ALA THR ILE ALA ALA GLU ARG ALA TYR LYS MET ALA GLY SEQRES 22 B 388 VAL LYS PRO GLU ASP VAL ASP PHE PHE GLU VAL HIS ASP SEQRES 23 B 388 ALA PHE THR VAL MET ALA ALA LEU SER LEU GLU ALA LEU SEQRES 24 B 388 GLY VAL ALA LYS LYS GLY GLU GLY ALA LYS LEU ALA ILE SEQRES 25 B 388 GLU GLY GLN ILE ALA ILE ASP GLY ASP TYR PRO ILE GLN SEQRES 26 B 388 THR MET GLY GLY LEU LYS ALA ARG GLY HIS PRO VAL GLY SEQRES 27 B 388 ALA THR GLY VAL TYR GLN VAL VAL GLU ALA VAL LEU GLN SEQRES 28 B 388 LEU ARG GLY GLU ALA PRO ASP GLY ILE GLN VAL PRO ASP SEQRES 29 B 388 ALA GLU VAL GLY LEU THR GLN ASN ILE GLY GLY THR GLY SEQRES 30 B 388 SER ASN ILE THR VAL THR VAL LEU ARG ARG VAL SEQRES 1 C 388 MET ARG LYS ALA ILE ILE VAL GLY VAL GLY MET THR PRO SEQRES 2 C 388 VAL GLY GLU HIS TRP ARG SER SER LEU ARG ASP LEU ALA SEQRES 3 C 388 VAL GLU ALA ILE LEU ASN ALA MET ASP ASP ALA GLY ILE SEQRES 4 C 388 ASP LYS VAL ASP SER LEU TYR VAL GLY ASN MET ALA SER SEQRES 5 C 388 GLY SER PHE VAL GLU GLN GLU ASN LEU GLY ALA LEU ILE SEQRES 6 C 388 ALA ASP TRP ALA GLY LEU GLY ASN ILE PRO ALA VAL LYS SEQRES 7 C 388 ILE GLU ALA ALA CYS ALA SER GLY GLY ALA ALA VAL GLN SEQRES 8 C 388 GLU GLY ALA LYS ALA VAL LEU SER GLY LEU GLU ASP VAL SEQRES 9 C 388 VAL LEU VAL VAL GLY VAL GLU LYS MET THR ASP ALA TRP SEQRES 10 C 388 PRO SER ASP ALA THR ARG TYR LEU GLY TYR ALA ALA ASP SEQRES 11 C 388 ALA GLU TRP GLU LEU PHE HIS GLY ALA SER PHE VAL ALA SEQRES 12 C 388 LEU ASN ALA LEU ILE MET ARG LEU TYR MET ASN THR TYR SEQRES 13 C 388 GLY TYR LYS GLU GLU ASP LEU ALA LEU PHE ALA VAL ASN SEQRES 14 C 388 ALA HIS ALA ASN GLY ALA LYS ASN PRO TYR ALA MET PHE SEQRES 15 C 388 LYS LYS PRO ILE THR VAL GLU THR VAL MET LYS SER PRO SEQRES 16 C 388 TYR ILE ALA ASP PRO LEU LYS LEU PHE ASP ALA SER PRO SEQRES 17 C 388 VAL CYS ASP GLY ALA ALA ALA VAL ILE ILE THR THR PRO SEQRES 18 C 388 GLU LYS ALA LYS GLU LEU GLY ILE PRO LYS ASP LYS TRP SEQRES 19 C 388 ILE GLU ILE ALA GLY MET GLY ARG ALA ILE ASP THR ILE SEQRES 20 C 388 ASN LEU ALA ASN ARG GLU ASP PHE LEU THR LEU LYS ALA SEQRES 21 C 388 ALA THR ILE ALA ALA GLU ARG ALA TYR LYS MET ALA GLY SEQRES 22 C 388 VAL LYS PRO GLU ASP VAL ASP PHE PHE GLU VAL HIS ASP SEQRES 23 C 388 ALA PHE THR VAL MET ALA ALA LEU SER LEU GLU ALA LEU SEQRES 24 C 388 GLY VAL ALA LYS LYS GLY GLU GLY ALA LYS LEU ALA ILE SEQRES 25 C 388 GLU GLY GLN ILE ALA ILE ASP GLY ASP TYR PRO ILE GLN SEQRES 26 C 388 THR MET GLY GLY LEU LYS ALA ARG GLY HIS PRO VAL GLY SEQRES 27 C 388 ALA THR GLY VAL TYR GLN VAL VAL GLU ALA VAL LEU GLN SEQRES 28 C 388 LEU ARG GLY GLU ALA PRO ASP GLY ILE GLN VAL PRO ASP SEQRES 29 C 388 ALA GLU VAL GLY LEU THR GLN ASN ILE GLY GLY THR GLY SEQRES 30 C 388 SER ASN ILE THR VAL THR VAL LEU ARG ARG VAL HELIX 1 AA1 SER A 21 ALA A 37 1 17 HELIX 2 AA2 VAL A 56 GLU A 59 5 4 HELIX 3 AA3 ASN A 60 ALA A 69 1 10 HELIX 4 AA4 ALA A 81 CYS A 83 5 3 HELIX 5 AA5 ALA A 84 GLY A 100 1 17 HELIX 6 AA6 GLY A 138 GLY A 157 1 20 HELIX 7 AA7 LYS A 159 LYS A 176 1 18 HELIX 8 AA8 THR A 187 LYS A 193 1 7 HELIX 9 AA9 LYS A 202 ALA A 206 5 5 HELIX 10 AB1 THR A 220 LEU A 227 1 8 HELIX 11 AB2 LEU A 258 GLY A 273 1 16 HELIX 12 AB3 LYS A 275 VAL A 279 5 5 HELIX 13 AB4 PHE A 288 LEU A 299 1 12 HELIX 14 AB5 GLU A 306 GLU A 313 1 8 HELIX 15 AB6 GLY A 328 ARG A 333 1 6 HELIX 16 AB7 ALA A 339 ARG A 353 1 15 HELIX 17 AB8 SER B 21 ALA B 37 1 17 HELIX 18 AB9 ASN B 60 ALA B 69 1 10 HELIX 19 AC1 ALA B 81 CYS B 83 5 3 HELIX 20 AC2 ALA B 84 GLY B 100 1 17 HELIX 21 AC3 HIS B 137 GLY B 157 1 21 HELIX 22 AC4 LYS B 159 LYS B 176 1 18 HELIX 23 AC5 THR B 187 LYS B 193 1 7 HELIX 24 AC6 PHE B 204 ALA B 206 5 3 HELIX 25 AC7 THR B 220 GLY B 228 1 9 HELIX 26 AC8 PRO B 230 LYS B 233 5 4 HELIX 27 AC9 ASN B 248 ARG B 252 5 5 HELIX 28 AD1 LEU B 258 GLY B 273 1 16 HELIX 29 AD2 LYS B 275 VAL B 279 5 5 HELIX 30 AD3 PHE B 288 GLY B 300 1 13 HELIX 31 AD4 GLU B 306 GLU B 313 1 8 HELIX 32 AD5 GLY B 328 GLY B 334 1 7 HELIX 33 AD6 ALA B 339 ARG B 353 1 15 HELIX 34 AD7 SER C 21 GLY C 38 1 18 HELIX 35 AD8 ASN C 60 ALA C 69 1 10 HELIX 36 AD9 ALA C 81 CYS C 83 5 3 HELIX 37 AE1 ALA C 84 GLY C 100 1 17 HELIX 38 AE2 ALA C 139 GLY C 157 1 19 HELIX 39 AE3 LYS C 159 LYS C 176 1 18 HELIX 40 AE4 THR C 187 LYS C 193 1 7 HELIX 41 AE5 LYS C 202 ALA C 206 5 5 HELIX 42 AE6 THR C 220 GLY C 228 1 9 HELIX 43 AE7 PRO C 230 TRP C 234 5 5 HELIX 44 AE8 ASN C 248 ARG C 252 5 5 HELIX 45 AE9 LEU C 258 GLY C 273 1 16 HELIX 46 AF1 LYS C 275 VAL C 279 5 5 HELIX 47 AF2 PHE C 288 LEU C 299 1 12 HELIX 48 AF3 ALA C 308 GLU C 313 1 6 HELIX 49 AF4 GLY C 328 ARG C 333 1 6 HELIX 50 AF5 PRO C 336 GLY C 338 5 3 HELIX 51 AF6 ALA C 339 GLY C 354 1 16 SHEET 1 AA1 9 ALA A 76 ILE A 79 0 SHEET 2 AA1 9 SER A 44 GLY A 48 1 N VAL A 47 O ILE A 79 SHEET 3 AA1 9 VAL A 104 GLU A 111 1 O LEU A 106 N SER A 44 SHEET 4 AA1 9 GLY A 212 THR A 219 -1 O ILE A 218 N VAL A 105 SHEET 5 AA1 9 ILE A 5 MET A 11 -1 N ILE A 5 O THR A 219 SHEET 6 AA1 9 ILE A 235 ILE A 244 -1 O ILE A 235 N ILE A 6 SHEET 7 AA1 9 ASN A 379 ARG A 387 -1 O ARG A 386 N GLU A 236 SHEET 8 AA1 9 VAL A 367 GLY A 374 -1 N GLY A 368 O LEU A 385 SHEET 9 AA1 9 PHE A 281 GLU A 283 1 N GLU A 283 O LEU A 369 SHEET 1 AA2 9 ALA B 76 ILE B 79 0 SHEET 2 AA2 9 SER B 44 GLY B 48 1 N VAL B 47 O ILE B 79 SHEET 3 AA2 9 VAL B 105 GLU B 111 1 O LEU B 106 N SER B 44 SHEET 4 AA2 9 GLY B 212 THR B 219 -1 O GLY B 212 N GLU B 111 SHEET 5 AA2 9 ALA B 4 MET B 11 -1 N ILE B 5 O THR B 219 SHEET 6 AA2 9 ILE B 235 ILE B 244 -1 O ILE B 235 N ILE B 6 SHEET 7 AA2 9 ASN B 379 ARG B 387 -1 O VAL B 382 N GLY B 241 SHEET 8 AA2 9 VAL B 367 GLY B 374 -1 N GLY B 368 O LEU B 385 SHEET 9 AA2 9 PHE B 281 GLU B 283 1 N GLU B 283 O LEU B 369 SHEET 1 AA3 2 TYR B 196 ALA B 198 0 SHEET 2 AA3 2 LEU B 201 LYS B 202 -1 O LEU B 201 N ILE B 197 SHEET 1 AA4 9 ALA C 76 ILE C 79 0 SHEET 2 AA4 9 SER C 44 GLY C 48 1 N VAL C 47 O ILE C 79 SHEET 3 AA4 9 VAL C 104 GLU C 111 1 O LEU C 106 N TYR C 46 SHEET 4 AA4 9 GLY C 212 THR C 219 -1 O VAL C 216 N VAL C 107 SHEET 5 AA4 9 ILE C 5 MET C 11 -1 N VAL C 7 O ILE C 217 SHEET 6 AA4 9 ILE C 235 ILE C 244 -1 O ILE C 235 N ILE C 6 SHEET 7 AA4 9 ASN C 379 ARG C 386 -1 O VAL C 382 N GLY C 241 SHEET 8 AA4 9 VAL C 367 GLY C 374 -1 N THR C 370 O THR C 383 SHEET 9 AA4 9 PHE C 281 GLU C 283 1 N GLU C 283 O LEU C 369 CRYST1 133.246 113.482 107.533 90.00 123.03 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007505 0.000000 0.004880 0.00000 SCALE2 0.000000 0.008812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011092 0.00000