HEADER TRANSFERASE 14-FEB-22 7YWM TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM ABCESSUS PHOSPHOPANTETHEINE TITLE 2 ADENYLYLTRANSFERASE IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DEPHOSPHO-COA PYROPHOSPHORYLASE,PANTETHEINE-PHOSPHATE COMPND 5 ADENYLYLTRANSFERASE,PPAT; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTEROIDES ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: COAD, MAB_3259C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COAD, PPAT, NUCLEOTIDYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.THOMAS,A.G.COYNE,T.L.BLUNDELL REVDAT 2 31-JAN-24 7YWM 1 REMARK REVDAT 1 29-JUN-22 7YWM 0 JRNL AUTH S.E.THOMAS,W.J.MCCARTHY,J.EL BAKALI,K.P.BROWN,S.Y.KIM, JRNL AUTH 2 M.BLASZCZYK,V.MENDES,C.ABELL,R.A.FLOTO,A.G.COYNE, JRNL AUTH 3 T.L.BLUNDELL JRNL TITL STRUCTURAL CHARACTERIZATION OF MYCOBACTERIUM ABSCESSUS JRNL TITL 2 PHOSPHOPANTETHEINE ADENYLYL TRANSFERASE LIGAND INTERACTIONS: JRNL TITL 3 IMPLICATIONS FOR FRAGMENT-BASED DRUG DESIGN. JRNL REF FRONT MOL BIOSCI V. 9 80432 2022 JRNL REFN ESSN 2296-889X JRNL PMID 35712348 JRNL DOI 10.3389/FMOLB.2022.880432 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 71471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 3656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.8500 - 4.8102 1.00 2765 155 0.1818 0.1967 REMARK 3 2 4.8102 - 3.8181 1.00 2668 153 0.1507 0.1622 REMARK 3 3 3.8181 - 3.3355 1.00 2626 167 0.1707 0.2121 REMARK 3 4 3.3355 - 3.0305 1.00 2613 155 0.1890 0.1893 REMARK 3 5 3.0305 - 2.8133 1.00 2629 140 0.1908 0.2206 REMARK 3 6 2.8133 - 2.6474 1.00 2659 124 0.1929 0.2381 REMARK 3 7 2.6474 - 2.5149 1.00 2630 115 0.1927 0.2161 REMARK 3 8 2.5149 - 2.4054 1.00 2641 128 0.1894 0.2399 REMARK 3 9 2.4054 - 2.3128 1.00 2622 121 0.1869 0.1639 REMARK 3 10 2.3128 - 2.2330 1.00 2575 160 0.1803 0.2231 REMARK 3 11 2.2330 - 2.1631 1.00 2587 168 0.1820 0.2145 REMARK 3 12 2.1631 - 2.1013 1.00 2586 141 0.1847 0.2285 REMARK 3 13 2.1013 - 2.0460 1.00 2595 147 0.1970 0.2248 REMARK 3 14 2.0460 - 1.9961 1.00 2583 142 0.1920 0.2112 REMARK 3 15 1.9961 - 1.9507 1.00 2621 128 0.1946 0.2202 REMARK 3 16 1.9507 - 1.9092 1.00 2592 126 0.2047 0.2339 REMARK 3 17 1.9092 - 1.8710 1.00 2583 144 0.2096 0.2461 REMARK 3 18 1.8710 - 1.8357 1.00 2574 157 0.2176 0.2699 REMARK 3 19 1.8357 - 1.8029 1.00 2580 154 0.2261 0.2748 REMARK 3 20 1.8029 - 1.7723 1.00 2600 138 0.2267 0.2914 REMARK 3 21 1.7723 - 1.7437 1.00 2553 145 0.2324 0.2562 REMARK 3 22 1.7437 - 1.7169 1.00 2616 127 0.2254 0.2438 REMARK 3 23 1.7169 - 1.6916 1.00 2594 121 0.2366 0.2693 REMARK 3 24 1.6916 - 1.6678 1.00 2599 122 0.2447 0.2816 REMARK 3 25 1.6678 - 1.6453 1.00 2577 131 0.2545 0.2525 REMARK 3 26 1.6453 - 1.6240 1.00 2547 147 0.2694 0.3002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3865 REMARK 3 ANGLE : 1.242 5304 REMARK 3 CHIRALITY : 0.052 620 REMARK 3 PLANARITY : 0.006 684 REMARK 3 DIHEDRAL : 16.048 1427 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YWM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71526 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 119.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.72800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 5O06 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM SODIUM BROMIDE 20-25% PEG3350 REMARK 280 0.1M BIS-TRIS PROPANE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.54150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.54150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.91350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.56700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.91350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.56700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.54150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.91350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.56700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.54150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.91350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.56700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -173.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -59.54150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 367 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 345 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLY A 158 REMARK 465 GLN A 159 REMARK 465 ALA A 160 REMARK 465 GLN A 161 REMARK 465 SER B 0 REMARK 465 GLY B 158 REMARK 465 GLN B 159 REMARK 465 ALA B 160 REMARK 465 GLN B 161 REMARK 465 SER C 0 REMARK 465 GLY C 158 REMARK 465 GLN C 159 REMARK 465 ALA C 160 REMARK 465 GLN C 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 41 CD CE NZ REMARK 470 ILE B 37 CD1 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 470 TYR B 97 OH REMARK 470 GLN B 150 CG CD OE1 NE2 REMARK 470 MET C 1 CG SD CE REMARK 470 LEU C 36 CD1 REMARK 470 ILE C 37 CG1 CG2 CD1 REMARK 470 ASN C 40 CG OD1 ND2 REMARK 470 ASP C 60 CG OD1 OD2 REMARK 470 TYR C 97 OH REMARK 470 ARG C 157 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 96 OG1 THR C 93 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 16.68 -146.50 REMARK 500 ALA A 109 -4.25 -145.08 REMARK 500 ASN B 83 34.84 -151.64 REMARK 500 ASN B 83 21.41 -144.81 REMARK 500 ALA B 109 -3.98 -145.76 REMARK 500 LYS C 41 106.09 177.28 REMARK 500 ASN C 83 39.43 -151.67 REMARK 500 ALA C 109 -0.95 -146.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 418 DISTANCE = 6.25 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 201 O2B REMARK 620 2 HOH A 308 O 55.3 REMARK 620 3 HOH A 323 O 102.9 154.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 201 O2B REMARK 620 2 HOH B 308 O 62.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP C 201 O1B REMARK 620 2 HOH C 320 O 104.0 REMARK 620 N 1 DBREF 7YWM A 1 161 UNP B1MDL6 COAD_MYCA9 1 161 DBREF 7YWM B 1 161 UNP B1MDL6 COAD_MYCA9 1 161 DBREF 7YWM C 1 161 UNP B1MDL6 COAD_MYCA9 1 161 SEQADV 7YWM SER A 0 UNP B1MDL6 EXPRESSION TAG SEQADV 7YWM SER B 0 UNP B1MDL6 EXPRESSION TAG SEQADV 7YWM SER C 0 UNP B1MDL6 EXPRESSION TAG SEQRES 1 A 162 SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 A 162 VAL THR LEU GLY HIS LEU ASP VAL PHE GLU ARG ALA ALA SEQRES 3 A 162 ALA GLN PHE ASP GLU VAL ILE VAL ALA VAL LEU ILE ASN SEQRES 4 A 162 PRO ASN LYS ALA GLY MET PHE THR VAL ASP GLU ARG ILE SEQRES 5 A 162 GLU MET ILE ARG GLU SER THR ALA ASP LEU PRO ASN LEU SEQRES 6 A 162 ARG VAL GLU SER GLY GLN GLY LEU LEU VAL ASP PHE VAL SEQRES 7 A 162 ARG GLU ARG GLY LEU ASN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 A 162 THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA GLN SEQRES 9 A 162 MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE VAL SEQRES 10 A 162 ALA THR ALA PRO ALA TYR SER PHE VAL SER SER SER LEU SEQRES 11 A 162 ALA LYS GLU VAL ALA THR TYR GLY GLY ASP VAL SER ALA SEQRES 12 A 162 LEU LEU PRO ALA SER VAL HIS GLN ARG LEU LEU GLY LYS SEQRES 13 A 162 LEU ARG GLY GLN ALA GLN SEQRES 1 B 162 SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 B 162 VAL THR LEU GLY HIS LEU ASP VAL PHE GLU ARG ALA ALA SEQRES 3 B 162 ALA GLN PHE ASP GLU VAL ILE VAL ALA VAL LEU ILE ASN SEQRES 4 B 162 PRO ASN LYS ALA GLY MET PHE THR VAL ASP GLU ARG ILE SEQRES 5 B 162 GLU MET ILE ARG GLU SER THR ALA ASP LEU PRO ASN LEU SEQRES 6 B 162 ARG VAL GLU SER GLY GLN GLY LEU LEU VAL ASP PHE VAL SEQRES 7 B 162 ARG GLU ARG GLY LEU ASN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 B 162 THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA GLN SEQRES 9 B 162 MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE VAL SEQRES 10 B 162 ALA THR ALA PRO ALA TYR SER PHE VAL SER SER SER LEU SEQRES 11 B 162 ALA LYS GLU VAL ALA THR TYR GLY GLY ASP VAL SER ALA SEQRES 12 B 162 LEU LEU PRO ALA SER VAL HIS GLN ARG LEU LEU GLY LYS SEQRES 13 B 162 LEU ARG GLY GLN ALA GLN SEQRES 1 C 162 SER MET THR GLY ALA VAL CYS PRO GLY SER PHE ASP PRO SEQRES 2 C 162 VAL THR LEU GLY HIS LEU ASP VAL PHE GLU ARG ALA ALA SEQRES 3 C 162 ALA GLN PHE ASP GLU VAL ILE VAL ALA VAL LEU ILE ASN SEQRES 4 C 162 PRO ASN LYS ALA GLY MET PHE THR VAL ASP GLU ARG ILE SEQRES 5 C 162 GLU MET ILE ARG GLU SER THR ALA ASP LEU PRO ASN LEU SEQRES 6 C 162 ARG VAL GLU SER GLY GLN GLY LEU LEU VAL ASP PHE VAL SEQRES 7 C 162 ARG GLU ARG GLY LEU ASN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 C 162 THR GLY THR ASP PHE GLU TYR GLU LEU GLN MET ALA GLN SEQRES 9 C 162 MET ASN LYS HIS ILE ALA GLY VAL ASP THR PHE PHE VAL SEQRES 10 C 162 ALA THR ALA PRO ALA TYR SER PHE VAL SER SER SER LEU SEQRES 11 C 162 ALA LYS GLU VAL ALA THR TYR GLY GLY ASP VAL SER ALA SEQRES 12 C 162 LEU LEU PRO ALA SER VAL HIS GLN ARG LEU LEU GLY LYS SEQRES 13 C 162 LEU ARG GLY GLN ALA GLN HET ATP A 201 31 HET MG A 202 1 HET ATP B 201 31 HET MG B 202 1 HET ATP C 201 31 HET MG C 202 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 4 ATP 3(C10 H16 N5 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 10 HOH *354(H2 O) HELIX 1 AA1 THR A 14 PHE A 28 1 15 HELIX 2 AA2 THR A 46 THR A 58 1 13 HELIX 3 AA3 LEU A 72 ARG A 80 1 9 HELIX 4 AA4 THR A 91 GLY A 110 1 20 HELIX 5 AA5 ALA A 119 SER A 123 5 5 HELIX 6 AA6 SER A 126 TYR A 136 1 11 HELIX 7 AA7 VAL A 140 LEU A 144 5 5 HELIX 8 AA8 PRO A 145 ARG A 157 1 13 HELIX 9 AA9 THR B 14 PHE B 28 1 15 HELIX 10 AB1 THR B 46 THR B 58 1 13 HELIX 11 AB2 LEU B 72 ARG B 80 1 9 HELIX 12 AB3 THR B 91 GLY B 110 1 20 HELIX 13 AB4 ALA B 119 SER B 123 5 5 HELIX 14 AB5 SER B 126 TYR B 136 1 11 HELIX 15 AB6 VAL B 140 LEU B 144 5 5 HELIX 16 AB7 PRO B 145 ARG B 157 1 13 HELIX 17 AB8 THR C 14 PHE C 28 1 15 HELIX 18 AB9 THR C 46 THR C 58 1 13 HELIX 19 AC1 LEU C 72 ARG C 80 1 9 HELIX 20 AC2 THR C 91 GLY C 110 1 20 HELIX 21 AC3 ALA C 119 SER C 123 5 5 HELIX 22 AC4 SER C 126 TYR C 136 1 11 HELIX 23 AC5 PRO C 145 ARG C 157 1 13 SHEET 1 AA1 3 GLY A 3 GLY A 8 0 SHEET 2 AA1 3 GLU A 30 LEU A 36 1 O LEU A 36 N GLY A 8 SHEET 3 AA1 3 LEU A 64 GLY A 69 1 O ARG A 65 N VAL A 33 SHEET 1 AA2 2 ALA A 84 LEU A 89 0 SHEET 2 AA2 2 ASP A 112 ALA A 117 1 O PHE A 114 N ILE A 85 SHEET 1 AA3 3 GLY B 3 GLY B 8 0 SHEET 2 AA3 3 GLU B 30 LEU B 36 1 O LEU B 36 N GLY B 8 SHEET 3 AA3 3 LEU B 64 GLY B 69 1 O ARG B 65 N VAL B 33 SHEET 1 AA4 2 ALA B 84 LEU B 89 0 SHEET 2 AA4 2 ASP B 112 ALA B 117 1 O PHE B 114 N ILE B 85 SHEET 1 AA5 3 GLY C 3 GLY C 8 0 SHEET 2 AA5 3 GLU C 30 LEU C 36 1 O ILE C 32 N CYS C 6 SHEET 3 AA5 3 LEU C 64 GLY C 69 1 O ARG C 65 N VAL C 33 SHEET 1 AA6 2 ALA C 84 LEU C 89 0 SHEET 2 AA6 2 ASP C 112 ALA C 117 1 O PHE C 114 N ILE C 85 LINK O2B ATP A 201 MG MG A 202 1555 1555 2.56 LINK MG MG A 202 O HOH A 308 1555 1555 2.87 LINK MG MG A 202 O HOH A 323 1555 1555 2.81 LINK O2B ATP B 201 MG MG B 202 1555 1555 2.11 LINK MG MG B 202 O HOH B 308 1555 1555 2.67 LINK O1B ATP C 201 MG MG C 202 1555 1555 2.69 LINK MG MG C 202 O HOH C 320 1555 1555 2.81 CISPEP 1 ASP A 11 PRO A 12 0 1.46 CISPEP 2 ASP B 11 PRO B 12 0 1.39 CISPEP 3 ASP C 11 PRO C 12 0 1.45 CRYST1 75.827 125.134 119.083 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007991 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008398 0.00000