data_7YWQ # _entry.id 7YWQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.362 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YWQ pdb_00007ywq 10.2210/pdb7ywq/pdb WWPDB D_1292118234 ? ? BMRB 34709 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of homodimeric Capsid protein (residues 17-95) of Tick-borne encephalitis virus (d16-TBEVC)' _pdbx_database_related.db_id 34709 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 7YWQ _pdbx_database_status.recvd_initial_deposition_date 2022-02-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Novotny, R.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0001-7025-5357 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 298 _citation.language ? _citation.page_first 102585 _citation.page_last 102585 _citation.title 'Tick-borne encephalitis virus capsid protein induces translational shutoff as revealed by its structural-biological analysis.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jbc.2022.102585 _citation.pdbx_database_id_PubMed 36223838 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Selinger, M.' 1 ? primary 'Novotny, R.' 2 ? primary 'Sys, J.' 3 ? primary 'Roby, J.A.' 4 ? primary 'Tykalova, H.' 5 ? primary 'Ranjani, G.S.' 6 ? primary 'Vancova, M.' 7 ? primary 'Jaklova, K.' 8 ? primary 'Kaufman, F.' 9 ? primary 'Bloom, M.E.' 10 ? primary 'Zdrahal, Z.' 11 ? primary 'Grubhoffer, L.' 12 ? primary 'Forwood, J.K.' 13 ? primary 'Hrabal, R.' 14 ? primary 'Rumlova, M.' 15 ? primary 'Sterba, J.' 16 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Genome polyprotein' _entity.formula_weight 8869.752 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLKAFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR _entity_poly.pdbx_seq_one_letter_code_can VSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLKAFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 SER n 1 3 LYS n 1 4 GLU n 1 5 THR n 1 6 ALA n 1 7 THR n 1 8 LYS n 1 9 THR n 1 10 ARG n 1 11 GLN n 1 12 PRO n 1 13 ARG n 1 14 VAL n 1 15 GLN n 1 16 MET n 1 17 PRO n 1 18 ASN n 1 19 GLY n 1 20 LEU n 1 21 VAL n 1 22 LEU n 1 23 MET n 1 24 ARG n 1 25 MET n 1 26 MET n 1 27 GLY n 1 28 ILE n 1 29 LEU n 1 30 TRP n 1 31 HIS n 1 32 ALA n 1 33 VAL n 1 34 ALA n 1 35 GLY n 1 36 THR n 1 37 ALA n 1 38 ARG n 1 39 ASN n 1 40 PRO n 1 41 VAL n 1 42 LEU n 1 43 LYS n 1 44 ALA n 1 45 PHE n 1 46 TRP n 1 47 ASN n 1 48 SER n 1 49 VAL n 1 50 PRO n 1 51 LEU n 1 52 LYS n 1 53 GLN n 1 54 ALA n 1 55 THR n 1 56 ALA n 1 57 ALA n 1 58 LEU n 1 59 ARG n 1 60 LYS n 1 61 ILE n 1 62 LYS n 1 63 ARG n 1 64 THR n 1 65 VAL n 1 66 SER n 1 67 ALA n 1 68 LEU n 1 69 MET n 1 70 VAL n 1 71 GLY n 1 72 LEU n 1 73 GLN n 1 74 LYS n 1 75 ARG n 1 76 GLY n 1 77 LYS n 1 78 ARG n 1 79 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 79 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Neudoerfl _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Tick-borne encephalitis virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11084 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant RIL _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code POLG_TBEVW _struct_ref.pdbx_db_accession P14336 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VSKETATKTRQPRVQMPNGLVLMRMMGILWHAVAGTARNPVLKAFWNSVPLKQATAALRKIKRTVSALMVGLQKRGKRR _struct_ref.pdbx_align_begin 18 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7YWQ A 1 ? 79 ? P14336 18 ? 96 ? 17 95 2 1 7YWQ B 1 ? 79 ? P14336 18 ? 96 ? 17 95 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 1 isotropic 3 1 1 '3D HNCO' 1 isotropic 4 1 1 '3D HCACO' 1 isotropic 5 1 1 '3D HNCA' 1 isotropic 6 1 1 '3D HNCACB' 1 isotropic 7 1 1 '3D CBCA(CO)NH' 1 isotropic 8 1 1 '3D HCCH-TOCSY' 1 isotropic 9 1 1 '3D 1H-15N NOESY' 1 isotropic 10 1 1 '3D 1H-13C NOESY' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label Conditions _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.4 mM [U-99% 13C; U-99% 15N] d16-TBEVC, 50 mM NaCl, 50 mM sodium phosphate, 5 % glycerol, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label 13C_15N_d16TBEVC _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 7YWQ _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 7 # _pdbx_nmr_ensemble.entry_id 7YWQ _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 7YWQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.5 'Bruker Biospin' 2 processing TopSpin 3.5 'Bruker Biospin' 3 'data analysis' 'CcpNmr Analysis' 2.5.2 CCPN 4 'peak picking' 'CcpNmr Analysis' 2.5.2 CCPN 5 'chemical shift assignment' 'CcpNmr Analysis' 2.5.2 CCPN 6 'structure calculation' 'X-PLOR NIH' 3.2 'Schwieters, Kuszewski, Tjandra and Clore' 7 refinement 'X-PLOR NIH' 3.2 'Schwieters, Kuszewski, Tjandra and Clore' 8 processing HADDOCK 2.2 Bonvin # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YWQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 7YWQ _struct.title 'Solution structure of homodimeric Capsid protein (residues 17-95) of Tick-borne encephalitis virus (d16-TBEVC)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YWQ _struct_keywords.text 'Capsid protein, Homodimer, Tick-borne encephalitis virus, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 1 ? THR A 7 ? VAL A 17 THR A 23 1 ? 7 HELX_P HELX_P2 AA2 PRO A 17 ? ALA A 34 ? PRO A 33 ALA A 50 1 ? 18 HELX_P HELX_P3 AA3 ASN A 39 ? SER A 48 ? ASN A 55 SER A 64 1 ? 10 HELX_P HELX_P4 AA4 LEU A 51 ? LYS A 74 ? LEU A 67 LYS A 90 1 ? 24 HELX_P HELX_P5 AA5 SER B 2 ? THR B 9 ? SER B 18 THR B 25 1 ? 8 HELX_P HELX_P6 AA6 PRO B 17 ? LEU B 22 ? PRO B 33 LEU B 38 1 ? 6 HELX_P HELX_P7 AA7 ARG B 24 ? ALA B 34 ? ARG B 40 ALA B 50 1 ? 11 HELX_P HELX_P8 AA8 ASN B 39 ? ASN B 47 ? ASN B 55 ASN B 63 1 ? 9 HELX_P HELX_P9 AA9 LEU B 51 ? ARG B 75 ? LEU B 67 ARG B 91 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7YWQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 17 17 VAL VAL A . n A 1 2 SER 2 18 18 SER SER A . n A 1 3 LYS 3 19 19 LYS LYS A . n A 1 4 GLU 4 20 20 GLU GLU A . n A 1 5 THR 5 21 21 THR THR A . n A 1 6 ALA 6 22 22 ALA ALA A . n A 1 7 THR 7 23 23 THR THR A . n A 1 8 LYS 8 24 24 LYS LYS A . n A 1 9 THR 9 25 25 THR THR A . n A 1 10 ARG 10 26 26 ARG ARG A . n A 1 11 GLN 11 27 27 GLN GLN A . n A 1 12 PRO 12 28 28 PRO PRO A . n A 1 13 ARG 13 29 29 ARG ARG A . n A 1 14 VAL 14 30 30 VAL VAL A . n A 1 15 GLN 15 31 31 GLN GLN A . n A 1 16 MET 16 32 32 MET MET A . n A 1 17 PRO 17 33 33 PRO PRO A . n A 1 18 ASN 18 34 34 ASN ASN A . n A 1 19 GLY 19 35 35 GLY GLY A . n A 1 20 LEU 20 36 36 LEU LEU A . n A 1 21 VAL 21 37 37 VAL VAL A . n A 1 22 LEU 22 38 38 LEU LEU A . n A 1 23 MET 23 39 39 MET MET A . n A 1 24 ARG 24 40 40 ARG ARG A . n A 1 25 MET 25 41 41 MET MET A . n A 1 26 MET 26 42 42 MET MET A . n A 1 27 GLY 27 43 43 GLY GLY A . n A 1 28 ILE 28 44 44 ILE ILE A . n A 1 29 LEU 29 45 45 LEU LEU A . n A 1 30 TRP 30 46 46 TRP TRP A . n A 1 31 HIS 31 47 47 HIS HIS A . n A 1 32 ALA 32 48 48 ALA ALA A . n A 1 33 VAL 33 49 49 VAL VAL A . n A 1 34 ALA 34 50 50 ALA ALA A . n A 1 35 GLY 35 51 51 GLY GLY A . n A 1 36 THR 36 52 52 THR THR A . n A 1 37 ALA 37 53 53 ALA ALA A . n A 1 38 ARG 38 54 54 ARG ARG A . n A 1 39 ASN 39 55 55 ASN ASN A . n A 1 40 PRO 40 56 56 PRO PRO A . n A 1 41 VAL 41 57 57 VAL VAL A . n A 1 42 LEU 42 58 58 LEU LEU A . n A 1 43 LYS 43 59 59 LYS LYS A . n A 1 44 ALA 44 60 60 ALA ALA A . n A 1 45 PHE 45 61 61 PHE PHE A . n A 1 46 TRP 46 62 62 TRP TRP A . n A 1 47 ASN 47 63 63 ASN ASN A . n A 1 48 SER 48 64 64 SER SER A . n A 1 49 VAL 49 65 65 VAL VAL A . n A 1 50 PRO 50 66 66 PRO PRO A . n A 1 51 LEU 51 67 67 LEU LEU A . n A 1 52 LYS 52 68 68 LYS LYS A . n A 1 53 GLN 53 69 69 GLN GLN A . n A 1 54 ALA 54 70 70 ALA ALA A . n A 1 55 THR 55 71 71 THR THR A . n A 1 56 ALA 56 72 72 ALA ALA A . n A 1 57 ALA 57 73 73 ALA ALA A . n A 1 58 LEU 58 74 74 LEU LEU A . n A 1 59 ARG 59 75 75 ARG ARG A . n A 1 60 LYS 60 76 76 LYS LYS A . n A 1 61 ILE 61 77 77 ILE ILE A . n A 1 62 LYS 62 78 78 LYS LYS A . n A 1 63 ARG 63 79 79 ARG ARG A . n A 1 64 THR 64 80 80 THR THR A . n A 1 65 VAL 65 81 81 VAL VAL A . n A 1 66 SER 66 82 82 SER SER A . n A 1 67 ALA 67 83 83 ALA ALA A . n A 1 68 LEU 68 84 84 LEU LEU A . n A 1 69 MET 69 85 85 MET MET A . n A 1 70 VAL 70 86 86 VAL VAL A . n A 1 71 GLY 71 87 87 GLY GLY A . n A 1 72 LEU 72 88 88 LEU LEU A . n A 1 73 GLN 73 89 89 GLN GLN A . n A 1 74 LYS 74 90 90 LYS LYS A . n A 1 75 ARG 75 91 91 ARG ARG A . n A 1 76 GLY 76 92 92 GLY GLY A . n A 1 77 LYS 77 93 93 LYS LYS A . n A 1 78 ARG 78 94 94 ARG ARG A . n A 1 79 ARG 79 95 95 ARG ARG A . n B 1 1 VAL 1 17 17 VAL VAL B . n B 1 2 SER 2 18 18 SER SER B . n B 1 3 LYS 3 19 19 LYS LYS B . n B 1 4 GLU 4 20 20 GLU GLU B . n B 1 5 THR 5 21 21 THR THR B . n B 1 6 ALA 6 22 22 ALA ALA B . n B 1 7 THR 7 23 23 THR THR B . n B 1 8 LYS 8 24 24 LYS LYS B . n B 1 9 THR 9 25 25 THR THR B . n B 1 10 ARG 10 26 26 ARG ARG B . n B 1 11 GLN 11 27 27 GLN GLN B . n B 1 12 PRO 12 28 28 PRO PRO B . n B 1 13 ARG 13 29 29 ARG ARG B . n B 1 14 VAL 14 30 30 VAL VAL B . n B 1 15 GLN 15 31 31 GLN GLN B . n B 1 16 MET 16 32 32 MET MET B . n B 1 17 PRO 17 33 33 PRO PRO B . n B 1 18 ASN 18 34 34 ASN ASN B . n B 1 19 GLY 19 35 35 GLY GLY B . n B 1 20 LEU 20 36 36 LEU LEU B . n B 1 21 VAL 21 37 37 VAL VAL B . n B 1 22 LEU 22 38 38 LEU LEU B . n B 1 23 MET 23 39 39 MET MET B . n B 1 24 ARG 24 40 40 ARG ARG B . n B 1 25 MET 25 41 41 MET MET B . n B 1 26 MET 26 42 42 MET MET B . n B 1 27 GLY 27 43 43 GLY GLY B . n B 1 28 ILE 28 44 44 ILE ILE B . n B 1 29 LEU 29 45 45 LEU LEU B . n B 1 30 TRP 30 46 46 TRP TRP B . n B 1 31 HIS 31 47 47 HIS HIS B . n B 1 32 ALA 32 48 48 ALA ALA B . n B 1 33 VAL 33 49 49 VAL VAL B . n B 1 34 ALA 34 50 50 ALA ALA B . n B 1 35 GLY 35 51 51 GLY GLY B . n B 1 36 THR 36 52 52 THR THR B . n B 1 37 ALA 37 53 53 ALA ALA B . n B 1 38 ARG 38 54 54 ARG ARG B . n B 1 39 ASN 39 55 55 ASN ASN B . n B 1 40 PRO 40 56 56 PRO PRO B . n B 1 41 VAL 41 57 57 VAL VAL B . n B 1 42 LEU 42 58 58 LEU LEU B . n B 1 43 LYS 43 59 59 LYS LYS B . n B 1 44 ALA 44 60 60 ALA ALA B . n B 1 45 PHE 45 61 61 PHE PHE B . n B 1 46 TRP 46 62 62 TRP TRP B . n B 1 47 ASN 47 63 63 ASN ASN B . n B 1 48 SER 48 64 64 SER SER B . n B 1 49 VAL 49 65 65 VAL VAL B . n B 1 50 PRO 50 66 66 PRO PRO B . n B 1 51 LEU 51 67 67 LEU LEU B . n B 1 52 LYS 52 68 68 LYS LYS B . n B 1 53 GLN 53 69 69 GLN GLN B . n B 1 54 ALA 54 70 70 ALA ALA B . n B 1 55 THR 55 71 71 THR THR B . n B 1 56 ALA 56 72 72 ALA ALA B . n B 1 57 ALA 57 73 73 ALA ALA B . n B 1 58 LEU 58 74 74 LEU LEU B . n B 1 59 ARG 59 75 75 ARG ARG B . n B 1 60 LYS 60 76 76 LYS LYS B . n B 1 61 ILE 61 77 77 ILE ILE B . n B 1 62 LYS 62 78 78 LYS LYS B . n B 1 63 ARG 63 79 79 ARG ARG B . n B 1 64 THR 64 80 80 THR THR B . n B 1 65 VAL 65 81 81 VAL VAL B . n B 1 66 SER 66 82 82 SER SER B . n B 1 67 ALA 67 83 83 ALA ALA B . n B 1 68 LEU 68 84 84 LEU LEU B . n B 1 69 MET 69 85 85 MET MET B . n B 1 70 VAL 70 86 86 VAL VAL B . n B 1 71 GLY 71 87 87 GLY GLY B . n B 1 72 LEU 72 88 88 LEU LEU B . n B 1 73 GLN 73 89 89 GLN GLN B . n B 1 74 LYS 74 90 90 LYS LYS B . n B 1 75 ARG 75 91 91 ARG ARG B . n B 1 76 GLY 76 92 92 GLY GLY B . n B 1 77 LYS 77 93 93 LYS LYS B . n B 1 78 ARG 78 94 94 ARG ARG B . n B 1 79 ARG 79 95 95 ARG ARG B . n # _pdbx_contact_author.id 2 _pdbx_contact_author.email richard.hrabal@vscht.cz _pdbx_contact_author.name_first Richard _pdbx_contact_author.name_last Hrabal _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5430-5270 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2400 ? 1 MORE -13 ? 1 'SSA (A^2)' 12050 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-10-19 2 'Structure model' 1 1 2022-10-26 3 'Structure model' 1 2 2022-11-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 3 'Structure model' '_citation.journal_volume' 13 3 'Structure model' '_citation.title' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 d16-TBEVC 0.4 ? mM '[U-99% 13C; U-99% 15N]' 1 NaCl 50 ? mM none 1 'sodium phosphate' 50 ? mM none 1 glycerol 5 ? % none # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 52 ? ? -160.98 -157.93 2 1 ALA A 53 ? ? 81.76 85.99 3 1 LEU A 67 ? ? -105.57 -66.21 4 1 VAL B 30 ? ? -82.72 32.65 5 1 THR B 52 ? ? -170.09 -162.50 6 1 ALA B 53 ? ? 76.48 109.55 7 1 ARG B 54 ? ? -154.49 82.77 8 2 ARG A 29 ? ? 68.70 82.46 9 2 THR A 52 ? ? -165.18 -163.39 10 2 ALA A 53 ? ? 83.82 97.31 11 2 PRO A 66 ? ? -54.71 100.80 12 2 LYS A 93 ? ? -105.32 79.05 13 2 SER B 18 ? ? -149.28 -65.33 14 2 ARG B 29 ? ? 67.68 77.93 15 2 THR B 52 ? ? -164.37 -166.93 16 2 ALA B 53 ? ? 75.69 95.74 17 2 ARG B 54 ? ? -150.52 33.64 18 2 PRO B 66 ? ? -60.24 99.99 19 2 LYS B 93 ? ? -104.67 59.82 20 3 SER A 18 ? ? -104.60 -110.13 21 3 GLU A 20 ? ? 65.18 -173.86 22 3 VAL A 30 ? ? -87.02 44.32 23 3 ALA A 53 ? ? -151.88 -82.97 24 3 ARG A 54 ? ? 39.31 50.43 25 3 SER B 18 ? ? -108.49 -149.15 26 3 LYS B 19 ? ? -121.40 -165.10 27 3 GLU B 20 ? ? 62.65 -163.15 28 3 VAL B 30 ? ? -86.77 36.00 29 3 ALA B 53 ? ? -156.06 -100.16 30 3 LEU B 67 ? ? -97.04 -85.37 31 4 SER A 18 ? ? -100.38 61.94 32 4 GLU A 20 ? ? 63.95 -168.03 33 4 LYS A 24 ? ? -171.60 -40.44 34 4 VAL A 30 ? ? -91.41 30.29 35 4 GLN A 31 ? ? -66.38 98.75 36 4 ARG A 54 ? ? 63.58 84.96 37 4 GLU B 20 ? ? 59.09 -159.03 38 4 VAL B 30 ? ? -80.21 45.36 39 4 ARG B 54 ? ? 65.84 75.87 40 5 GLU A 20 ? ? 69.10 155.09 41 5 ALA A 53 ? ? -162.25 -147.29 42 5 GLU B 20 ? ? 62.63 -156.15 43 5 ALA B 53 ? ? -172.16 -148.27 44 5 LEU B 67 ? ? -90.09 -82.28 45 6 GLU A 20 ? ? 54.09 -148.90 46 6 THR A 52 ? ? -171.31 136.60 47 6 ALA A 53 ? ? -172.34 99.06 48 6 PRO A 66 ? ? -58.57 109.51 49 6 GLU B 20 ? ? 61.18 -165.19 50 6 ALA B 53 ? ? -162.46 91.60 51 7 LYS A 19 ? ? -171.58 -41.39 52 7 GLU A 20 ? ? 59.43 -170.55 53 7 VAL A 30 ? ? -77.37 40.94 54 7 ALA A 50 ? ? -93.16 36.40 55 7 ALA A 53 ? ? -168.90 92.71 56 7 ARG A 54 ? ? -145.35 48.08 57 7 SER A 64 ? ? -113.66 61.84 58 7 LEU A 67 ? ? -61.97 -73.14 59 7 LYS A 93 ? ? -119.27 73.62 60 7 LYS B 19 ? ? -175.58 -35.58 61 7 GLU B 20 ? ? 60.03 -154.22 62 7 GLN B 31 ? ? -69.00 96.05 63 7 ALA B 53 ? ? -156.71 82.76 64 7 LEU B 67 ? ? -81.19 -73.50 65 8 LYS A 19 ? ? -132.33 -55.50 66 8 GLU A 20 ? ? 55.91 -159.87 67 8 VAL A 30 ? ? -99.20 49.27 68 8 ARG A 94 ? ? -151.03 -68.11 69 8 LYS B 19 ? ? -158.77 -42.40 70 8 GLU B 20 ? ? 46.55 -110.77 71 8 THR B 21 ? ? -132.84 -38.48 72 8 ARG B 29 ? ? 66.54 70.08 73 8 ARG B 94 ? ? -126.61 -53.44 74 9 LYS A 19 ? ? 56.92 -106.82 75 9 GLU A 20 ? ? 57.33 -158.41 76 9 THR A 52 ? ? -149.67 -157.81 77 9 ALA A 53 ? ? 88.75 9.18 78 9 PRO A 66 ? ? -58.05 108.78 79 9 LYS B 19 ? ? 59.86 -147.82 80 9 GLU B 20 ? ? 64.37 176.76 81 9 ALA B 53 ? ? 82.85 20.60 82 9 ARG B 54 ? ? -84.14 47.82 83 10 GLU A 20 ? ? 54.41 -137.41 84 10 ALA A 53 ? ? -152.63 -149.62 85 10 ARG A 54 ? ? 60.63 66.53 86 10 GLU B 20 ? ? 62.35 -165.07 87 10 VAL B 30 ? ? -102.21 68.77 88 10 THR B 52 ? ? -174.62 146.51 89 10 ALA B 53 ? ? -166.88 -166.09 90 10 ARG B 54 ? ? 67.54 70.56 91 11 GLU A 20 ? ? 69.50 161.10 92 11 ARG A 29 ? ? 61.15 64.88 93 11 VAL A 30 ? ? -93.56 46.62 94 11 ARG A 54 ? ? 72.74 90.63 95 11 LEU A 67 ? ? -99.31 -80.58 96 11 GLU B 20 ? ? 68.39 168.76 97 11 ALA B 53 ? ? -168.13 -157.06 98 11 ARG B 54 ? ? 62.72 63.82 99 11 ARG B 94 ? ? -92.37 -159.03 100 12 GLU A 20 ? ? 51.44 -146.31 101 12 ARG A 29 ? ? 60.75 63.91 102 12 THR A 52 ? ? -127.81 -161.36 103 12 ALA A 53 ? ? 71.83 112.35 104 12 ARG A 54 ? ? -143.47 18.16 105 12 SER A 64 ? ? -99.51 53.32 106 12 LEU A 67 ? ? -76.63 -79.42 107 12 GLU B 20 ? ? 55.40 -160.78 108 12 ALA B 53 ? ? 73.76 107.10 109 12 SER B 64 ? ? -97.98 42.45 110 13 LYS A 19 ? ? -160.67 98.90 111 13 GLU A 20 ? ? 69.85 162.74 112 13 ARG A 29 ? ? 75.00 36.35 113 13 ALA A 53 ? ? -163.90 -164.09 114 13 ARG A 54 ? ? 70.78 66.01 115 13 LYS B 19 ? ? -164.76 99.10 116 13 GLU B 20 ? ? 77.05 158.35 117 13 ALA B 53 ? ? -168.83 -145.65 118 13 ARG B 54 ? ? 62.52 69.15 119 14 SER A 18 ? ? -152.93 -50.36 120 14 ARG A 29 ? ? 71.25 54.98 121 14 ALA A 50 ? ? -99.13 46.15 122 14 ALA A 53 ? ? -160.04 89.57 123 14 ARG A 54 ? ? -143.91 45.62 124 14 ARG B 91 ? ? -148.39 26.11 125 15 SER A 18 ? ? -142.12 44.20 126 15 LYS A 19 ? ? 57.13 -162.86 127 15 GLU A 20 ? ? 50.76 -106.21 128 15 GLN A 31 ? ? -62.64 99.83 129 15 ALA A 53 ? ? -163.18 104.92 130 15 ARG A 54 ? ? -150.18 42.90 131 15 LEU A 67 ? ? -94.78 -85.95 132 15 LYS B 19 ? ? 63.27 -155.51 133 15 GLU B 20 ? ? 58.08 -104.29 134 15 ARG B 26 ? ? 81.45 -1.81 135 15 ARG B 29 ? ? 62.76 62.71 136 15 VAL B 30 ? ? -95.72 48.87 137 15 LEU B 67 ? ? -103.39 -68.69 138 16 GLU A 20 ? ? 59.99 -166.67 139 16 ARG A 29 ? ? 62.91 75.42 140 16 ALA A 53 ? ? -167.43 -161.44 141 16 ARG A 54 ? ? 76.39 72.91 142 16 GLU B 20 ? ? 57.48 -159.81 143 16 ARG B 29 ? ? 69.81 70.35 144 16 ALA B 53 ? ? -168.34 -159.22 145 16 ARG B 54 ? ? 71.18 70.68 146 16 SER B 64 ? ? -92.31 54.29 147 17 LYS A 19 ? ? 63.70 -160.72 148 17 GLU A 20 ? ? 57.16 -156.60 149 17 ALA A 53 ? ? -157.92 -103.85 150 17 LYS B 19 ? ? 68.31 173.20 151 17 GLU B 20 ? ? 55.41 -146.16 152 17 ALA B 50 ? ? -90.65 58.56 153 17 ALA B 53 ? ? -168.76 -113.94 154 18 GLU A 20 ? ? 67.44 -175.61 155 18 ALA A 53 ? ? -152.37 87.28 156 18 ARG A 54 ? ? -169.17 83.00 157 18 LEU A 67 ? ? -82.44 -94.20 158 18 GLU B 20 ? ? 63.91 -170.58 159 18 ARG B 26 ? ? -113.34 74.49 160 18 ALA B 53 ? ? -154.06 19.80 161 18 LEU B 67 ? ? -87.09 -86.61 162 19 GLU A 20 ? ? 69.26 144.65 163 19 THR A 52 ? ? -176.57 144.33 164 19 LEU A 67 ? ? -107.43 -73.40 165 19 GLU B 20 ? ? 71.46 140.89 166 19 VAL B 30 ? ? -85.61 44.23 167 20 LYS A 19 ? ? 67.66 -143.88 168 20 GLU A 20 ? ? 53.80 -146.72 169 20 VAL A 30 ? ? -83.23 36.78 170 20 ALA A 53 ? ? 77.88 110.08 171 20 ARG A 54 ? ? -141.14 15.73 172 20 LYS B 19 ? ? 68.28 -165.75 173 20 GLU B 20 ? ? 54.17 -171.80 174 20 ARG B 29 ? ? 60.83 61.25 175 20 ALA B 53 ? ? 78.73 124.03 176 20 ARG B 54 ? ? -155.90 58.33 # _pdbx_audit_support.funding_organization 'Czech Science Foundation' _pdbx_audit_support.country 'Czech Republic' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' 'Detection of protein dimerization by a size-exclusion chromatography.' 2 1 cross-linking 'Further confirmation of protein dimerization.' 3 1 'mass spectrometry' ;Identification of unique linkages from chemical cross-linking by mass spectrometry (XL-MS). Identification of interaction interfaces by hydrogen-deuterium exchange experiment (HDX-MS). ; #