data_7YX5 # _entry.id 7YX5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7YX5 pdb_00007yx5 10.2210/pdb7yx5/pdb WWPDB D_1292120355 ? ? EMDB EMD-14355 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-08-10 2 'Structure model' 1 1 2024-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' em_admin # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7YX5 _pdbx_database_status.recvd_initial_deposition_date 2022-02-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4z24 unspecified EMDB . EMD-14353 'other EM volume' EMDB . EMD-14354 'other EM volume' EMDB . EMD-13641 'other EM volume' EMDB 'Structure of the Mimivirus genomic fibre in its relaxed 5-start helix form' EMD-14355 'associated EM volume' # _pdbx_contact_author.id 4 _pdbx_contact_author.email chantal.abergel@igs.cnrs-mrs.fr _pdbx_contact_author.name_first Chantal _pdbx_contact_author.name_last Abergel _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1875-4049 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Villalta, A.' 1 ? 'Schmitt, A.' 2 ? 'Estrozi, L.F.' 3 ? 'Quemin, E.R.J.' 4 ? 'Alempic, J.M.' 5 ? 'Lartigue, A.' 6 ? 'Prazak, V.' 7 ? 'Belmudes, L.' 8 ? 'Vasishtan, D.' 9 ? 'Colmant, A.M.G.' 10 ? 'Honore, F.A.' 11 ? 'Coute, Y.' 12 ? 'Grunewald, K.' 13 ? 'Abergel, C.' 14 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Elife _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2050-084X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.7554/eLife.77607 _citation.pdbx_database_id_PubMed 35900198 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Villalta, A.' 1 ? primary 'Schmitt, A.' 2 0000-0002-3565-8692 primary 'Estrozi, L.F.' 3 ? primary 'Quemin, E.R.J.' 4 ? primary 'Alempic, J.M.' 5 ? primary 'Lartigue, A.' 6 ? primary 'Prazak, V.' 7 0000-0001-8149-218X primary 'Belmudes, L.' 8 ? primary 'Vasishtan, D.' 9 ? primary 'Colmant, A.M.G.' 10 0000-0002-2004-4073 primary 'Honore, F.A.' 11 0000-0002-0390-8730 primary 'Coute, Y.' 12 0000-0003-3896-6196 primary 'Grunewald, K.' 13 ? primary 'Abergel, C.' 14 0000-0003-1875-4049 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Putative glucose-methanol-choline oxidoreductase protein' 76431.055 1 ? ? ? ? 2 non-polymer syn 'FLAVIN-ADENINE DINUCLEOTIDE' 785.550 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHRSRCNCNDTSNSNGSQHGINLPLRKIDTYDPCVNCRVKPHLCPKPHPCPKPENLEADIVIIGAGAAGCVLAYYLTKF SDLKIILLEAGHTHFNDPVVTDPMGFFGKYNPPNENIRMSQNPSYAWQPALEPDTGAYSMRNVVAHGLAVGGSTAINQLN YIVGGRTVFDNDWPTGWKYDDIKKYFRRVLADISPIRDGTKVNLTNTILESMRVLADQQVSSGVPVDFLINKATGGLPNI EQTYQGAPIVNLNDYEGINSVCGFKSYYVGVNQLSDGSYIRKYAGNTYLNSYYVDSNGFGIGKFSNLRVISDAVVDRIHF EGQRAVSVTYIDKKGNLHSVKVHKEVEICSGSFFTPTILQRSGIGDFSYLSSIGVPDLVYNNPLVGQGLRNHYSPITQVS VTGPDAAAFLSNTAAGPTNMSFRGAGMLGYHKLEPNKPSNAGSVTYRKYELLVTGGVAISADQQYLSGISSSTGNYFALI ADDIRFAPVGYIKIGTPNFPRDTPKIFFNTFVNYTPTTDPADQQWPVAQKTLAPLISALLGYDAIYQIVQQMKVVAVNAG FNVTLQMAYPPNDLLVELHNGLNTYGINWWHYFVPSLVNDDTPAGKLFASTLSKLSYYPRSGAHLDSHQSCSCSIGGTVD TELKVIGVENVRVTDLSAAPHPPGGNTWCTAAMIGARATDLILGKPLVANLPPEDVPVFTTS ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHRSRCNCNDTSNSNGSQHGINLPLRKIDTYDPCVNCRVKPHLCPKPHPCPKPENLEADIVIIGAGAAGCVLAYYLTKF SDLKIILLEAGHTHFNDPVVTDPMGFFGKYNPPNENIRMSQNPSYAWQPALEPDTGAYSMRNVVAHGLAVGGSTAINQLN YIVGGRTVFDNDWPTGWKYDDIKKYFRRVLADISPIRDGTKVNLTNTILESMRVLADQQVSSGVPVDFLINKATGGLPNI EQTYQGAPIVNLNDYEGINSVCGFKSYYVGVNQLSDGSYIRKYAGNTYLNSYYVDSNGFGIGKFSNLRVISDAVVDRIHF EGQRAVSVTYIDKKGNLHSVKVHKEVEICSGSFFTPTILQRSGIGDFSYLSSIGVPDLVYNNPLVGQGLRNHYSPITQVS VTGPDAAAFLSNTAAGPTNMSFRGAGMLGYHKLEPNKPSNAGSVTYRKYELLVTGGVAISADQQYLSGISSSTGNYFALI ADDIRFAPVGYIKIGTPNFPRDTPKIFFNTFVNYTPTTDPADQQWPVAQKTLAPLISALLGYDAIYQIVQQMKVVAVNAG FNVTLQMAYPPNDLLVELHNGLNTYGINWWHYFVPSLVNDDTPAGKLFASTLSKLSYYPRSGAHLDSHQSCSCSIGGTVD TELKVIGVENVRVTDLSAAPHPPGGNTWCTAAMIGARATDLILGKPLVANLPPEDVPVFTTS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'FLAVIN-ADENINE DINUCLEOTIDE' _pdbx_entity_nonpoly.comp_id FAD # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 ARG n 1 5 SER n 1 6 ARG n 1 7 CYS n 1 8 ASN n 1 9 CYS n 1 10 ASN n 1 11 ASP n 1 12 THR n 1 13 SER n 1 14 ASN n 1 15 SER n 1 16 ASN n 1 17 GLY n 1 18 SER n 1 19 GLN n 1 20 HIS n 1 21 GLY n 1 22 ILE n 1 23 ASN n 1 24 LEU n 1 25 PRO n 1 26 LEU n 1 27 ARG n 1 28 LYS n 1 29 ILE n 1 30 ASP n 1 31 THR n 1 32 TYR n 1 33 ASP n 1 34 PRO n 1 35 CYS n 1 36 VAL n 1 37 ASN n 1 38 CYS n 1 39 ARG n 1 40 VAL n 1 41 LYS n 1 42 PRO n 1 43 HIS n 1 44 LEU n 1 45 CYS n 1 46 PRO n 1 47 LYS n 1 48 PRO n 1 49 HIS n 1 50 PRO n 1 51 CYS n 1 52 PRO n 1 53 LYS n 1 54 PRO n 1 55 GLU n 1 56 ASN n 1 57 LEU n 1 58 GLU n 1 59 ALA n 1 60 ASP n 1 61 ILE n 1 62 VAL n 1 63 ILE n 1 64 ILE n 1 65 GLY n 1 66 ALA n 1 67 GLY n 1 68 ALA n 1 69 ALA n 1 70 GLY n 1 71 CYS n 1 72 VAL n 1 73 LEU n 1 74 ALA n 1 75 TYR n 1 76 TYR n 1 77 LEU n 1 78 THR n 1 79 LYS n 1 80 PHE n 1 81 SER n 1 82 ASP n 1 83 LEU n 1 84 LYS n 1 85 ILE n 1 86 ILE n 1 87 LEU n 1 88 LEU n 1 89 GLU n 1 90 ALA n 1 91 GLY n 1 92 HIS n 1 93 THR n 1 94 HIS n 1 95 PHE n 1 96 ASN n 1 97 ASP n 1 98 PRO n 1 99 VAL n 1 100 VAL n 1 101 THR n 1 102 ASP n 1 103 PRO n 1 104 MET n 1 105 GLY n 1 106 PHE n 1 107 PHE n 1 108 GLY n 1 109 LYS n 1 110 TYR n 1 111 ASN n 1 112 PRO n 1 113 PRO n 1 114 ASN n 1 115 GLU n 1 116 ASN n 1 117 ILE n 1 118 ARG n 1 119 MET n 1 120 SER n 1 121 GLN n 1 122 ASN n 1 123 PRO n 1 124 SER n 1 125 TYR n 1 126 ALA n 1 127 TRP n 1 128 GLN n 1 129 PRO n 1 130 ALA n 1 131 LEU n 1 132 GLU n 1 133 PRO n 1 134 ASP n 1 135 THR n 1 136 GLY n 1 137 ALA n 1 138 TYR n 1 139 SER n 1 140 MET n 1 141 ARG n 1 142 ASN n 1 143 VAL n 1 144 VAL n 1 145 ALA n 1 146 HIS n 1 147 GLY n 1 148 LEU n 1 149 ALA n 1 150 VAL n 1 151 GLY n 1 152 GLY n 1 153 SER n 1 154 THR n 1 155 ALA n 1 156 ILE n 1 157 ASN n 1 158 GLN n 1 159 LEU n 1 160 ASN n 1 161 TYR n 1 162 ILE n 1 163 VAL n 1 164 GLY n 1 165 GLY n 1 166 ARG n 1 167 THR n 1 168 VAL n 1 169 PHE n 1 170 ASP n 1 171 ASN n 1 172 ASP n 1 173 TRP n 1 174 PRO n 1 175 THR n 1 176 GLY n 1 177 TRP n 1 178 LYS n 1 179 TYR n 1 180 ASP n 1 181 ASP n 1 182 ILE n 1 183 LYS n 1 184 LYS n 1 185 TYR n 1 186 PHE n 1 187 ARG n 1 188 ARG n 1 189 VAL n 1 190 LEU n 1 191 ALA n 1 192 ASP n 1 193 ILE n 1 194 SER n 1 195 PRO n 1 196 ILE n 1 197 ARG n 1 198 ASP n 1 199 GLY n 1 200 THR n 1 201 LYS n 1 202 VAL n 1 203 ASN n 1 204 LEU n 1 205 THR n 1 206 ASN n 1 207 THR n 1 208 ILE n 1 209 LEU n 1 210 GLU n 1 211 SER n 1 212 MET n 1 213 ARG n 1 214 VAL n 1 215 LEU n 1 216 ALA n 1 217 ASP n 1 218 GLN n 1 219 GLN n 1 220 VAL n 1 221 SER n 1 222 SER n 1 223 GLY n 1 224 VAL n 1 225 PRO n 1 226 VAL n 1 227 ASP n 1 228 PHE n 1 229 LEU n 1 230 ILE n 1 231 ASN n 1 232 LYS n 1 233 ALA n 1 234 THR n 1 235 GLY n 1 236 GLY n 1 237 LEU n 1 238 PRO n 1 239 ASN n 1 240 ILE n 1 241 GLU n 1 242 GLN n 1 243 THR n 1 244 TYR n 1 245 GLN n 1 246 GLY n 1 247 ALA n 1 248 PRO n 1 249 ILE n 1 250 VAL n 1 251 ASN n 1 252 LEU n 1 253 ASN n 1 254 ASP n 1 255 TYR n 1 256 GLU n 1 257 GLY n 1 258 ILE n 1 259 ASN n 1 260 SER n 1 261 VAL n 1 262 CYS n 1 263 GLY n 1 264 PHE n 1 265 LYS n 1 266 SER n 1 267 TYR n 1 268 TYR n 1 269 VAL n 1 270 GLY n 1 271 VAL n 1 272 ASN n 1 273 GLN n 1 274 LEU n 1 275 SER n 1 276 ASP n 1 277 GLY n 1 278 SER n 1 279 TYR n 1 280 ILE n 1 281 ARG n 1 282 LYS n 1 283 TYR n 1 284 ALA n 1 285 GLY n 1 286 ASN n 1 287 THR n 1 288 TYR n 1 289 LEU n 1 290 ASN n 1 291 SER n 1 292 TYR n 1 293 TYR n 1 294 VAL n 1 295 ASP n 1 296 SER n 1 297 ASN n 1 298 GLY n 1 299 PHE n 1 300 GLY n 1 301 ILE n 1 302 GLY n 1 303 LYS n 1 304 PHE n 1 305 SER n 1 306 ASN n 1 307 LEU n 1 308 ARG n 1 309 VAL n 1 310 ILE n 1 311 SER n 1 312 ASP n 1 313 ALA n 1 314 VAL n 1 315 VAL n 1 316 ASP n 1 317 ARG n 1 318 ILE n 1 319 HIS n 1 320 PHE n 1 321 GLU n 1 322 GLY n 1 323 GLN n 1 324 ARG n 1 325 ALA n 1 326 VAL n 1 327 SER n 1 328 VAL n 1 329 THR n 1 330 TYR n 1 331 ILE n 1 332 ASP n 1 333 LYS n 1 334 LYS n 1 335 GLY n 1 336 ASN n 1 337 LEU n 1 338 HIS n 1 339 SER n 1 340 VAL n 1 341 LYS n 1 342 VAL n 1 343 HIS n 1 344 LYS n 1 345 GLU n 1 346 VAL n 1 347 GLU n 1 348 ILE n 1 349 CYS n 1 350 SER n 1 351 GLY n 1 352 SER n 1 353 PHE n 1 354 PHE n 1 355 THR n 1 356 PRO n 1 357 THR n 1 358 ILE n 1 359 LEU n 1 360 GLN n 1 361 ARG n 1 362 SER n 1 363 GLY n 1 364 ILE n 1 365 GLY n 1 366 ASP n 1 367 PHE n 1 368 SER n 1 369 TYR n 1 370 LEU n 1 371 SER n 1 372 SER n 1 373 ILE n 1 374 GLY n 1 375 VAL n 1 376 PRO n 1 377 ASP n 1 378 LEU n 1 379 VAL n 1 380 TYR n 1 381 ASN n 1 382 ASN n 1 383 PRO n 1 384 LEU n 1 385 VAL n 1 386 GLY n 1 387 GLN n 1 388 GLY n 1 389 LEU n 1 390 ARG n 1 391 ASN n 1 392 HIS n 1 393 TYR n 1 394 SER n 1 395 PRO n 1 396 ILE n 1 397 THR n 1 398 GLN n 1 399 VAL n 1 400 SER n 1 401 VAL n 1 402 THR n 1 403 GLY n 1 404 PRO n 1 405 ASP n 1 406 ALA n 1 407 ALA n 1 408 ALA n 1 409 PHE n 1 410 LEU n 1 411 SER n 1 412 ASN n 1 413 THR n 1 414 ALA n 1 415 ALA n 1 416 GLY n 1 417 PRO n 1 418 THR n 1 419 ASN n 1 420 MET n 1 421 SER n 1 422 PHE n 1 423 ARG n 1 424 GLY n 1 425 ALA n 1 426 GLY n 1 427 MET n 1 428 LEU n 1 429 GLY n 1 430 TYR n 1 431 HIS n 1 432 LYS n 1 433 LEU n 1 434 GLU n 1 435 PRO n 1 436 ASN n 1 437 LYS n 1 438 PRO n 1 439 SER n 1 440 ASN n 1 441 ALA n 1 442 GLY n 1 443 SER n 1 444 VAL n 1 445 THR n 1 446 TYR n 1 447 ARG n 1 448 LYS n 1 449 TYR n 1 450 GLU n 1 451 LEU n 1 452 LEU n 1 453 VAL n 1 454 THR n 1 455 GLY n 1 456 GLY n 1 457 VAL n 1 458 ALA n 1 459 ILE n 1 460 SER n 1 461 ALA n 1 462 ASP n 1 463 GLN n 1 464 GLN n 1 465 TYR n 1 466 LEU n 1 467 SER n 1 468 GLY n 1 469 ILE n 1 470 SER n 1 471 SER n 1 472 SER n 1 473 THR n 1 474 GLY n 1 475 ASN n 1 476 TYR n 1 477 PHE n 1 478 ALA n 1 479 LEU n 1 480 ILE n 1 481 ALA n 1 482 ASP n 1 483 ASP n 1 484 ILE n 1 485 ARG n 1 486 PHE n 1 487 ALA n 1 488 PRO n 1 489 VAL n 1 490 GLY n 1 491 TYR n 1 492 ILE n 1 493 LYS n 1 494 ILE n 1 495 GLY n 1 496 THR n 1 497 PRO n 1 498 ASN n 1 499 PHE n 1 500 PRO n 1 501 ARG n 1 502 ASP n 1 503 THR n 1 504 PRO n 1 505 LYS n 1 506 ILE n 1 507 PHE n 1 508 PHE n 1 509 ASN n 1 510 THR n 1 511 PHE n 1 512 VAL n 1 513 ASN n 1 514 TYR n 1 515 THR n 1 516 PRO n 1 517 THR n 1 518 THR n 1 519 ASP n 1 520 PRO n 1 521 ALA n 1 522 ASP n 1 523 GLN n 1 524 GLN n 1 525 TRP n 1 526 PRO n 1 527 VAL n 1 528 ALA n 1 529 GLN n 1 530 LYS n 1 531 THR n 1 532 LEU n 1 533 ALA n 1 534 PRO n 1 535 LEU n 1 536 ILE n 1 537 SER n 1 538 ALA n 1 539 LEU n 1 540 LEU n 1 541 GLY n 1 542 TYR n 1 543 ASP n 1 544 ALA n 1 545 ILE n 1 546 TYR n 1 547 GLN n 1 548 ILE n 1 549 VAL n 1 550 GLN n 1 551 GLN n 1 552 MET n 1 553 LYS n 1 554 VAL n 1 555 VAL n 1 556 ALA n 1 557 VAL n 1 558 ASN n 1 559 ALA n 1 560 GLY n 1 561 PHE n 1 562 ASN n 1 563 VAL n 1 564 THR n 1 565 LEU n 1 566 GLN n 1 567 MET n 1 568 ALA n 1 569 TYR n 1 570 PRO n 1 571 PRO n 1 572 ASN n 1 573 ASP n 1 574 LEU n 1 575 LEU n 1 576 VAL n 1 577 GLU n 1 578 LEU n 1 579 HIS n 1 580 ASN n 1 581 GLY n 1 582 LEU n 1 583 ASN n 1 584 THR n 1 585 TYR n 1 586 GLY n 1 587 ILE n 1 588 ASN n 1 589 TRP n 1 590 TRP n 1 591 HIS n 1 592 TYR n 1 593 PHE n 1 594 VAL n 1 595 PRO n 1 596 SER n 1 597 LEU n 1 598 VAL n 1 599 ASN n 1 600 ASP n 1 601 ASP n 1 602 THR n 1 603 PRO n 1 604 ALA n 1 605 GLY n 1 606 LYS n 1 607 LEU n 1 608 PHE n 1 609 ALA n 1 610 SER n 1 611 THR n 1 612 LEU n 1 613 SER n 1 614 LYS n 1 615 LEU n 1 616 SER n 1 617 TYR n 1 618 TYR n 1 619 PRO n 1 620 ARG n 1 621 SER n 1 622 GLY n 1 623 ALA n 1 624 HIS n 1 625 LEU n 1 626 ASP n 1 627 SER n 1 628 HIS n 1 629 GLN n 1 630 SER n 1 631 CYS n 1 632 SER n 1 633 CYS n 1 634 SER n 1 635 ILE n 1 636 GLY n 1 637 GLY n 1 638 THR n 1 639 VAL n 1 640 ASP n 1 641 THR n 1 642 GLU n 1 643 LEU n 1 644 LYS n 1 645 VAL n 1 646 ILE n 1 647 GLY n 1 648 VAL n 1 649 GLU n 1 650 ASN n 1 651 VAL n 1 652 ARG n 1 653 VAL n 1 654 THR n 1 655 ASP n 1 656 LEU n 1 657 SER n 1 658 ALA n 1 659 ALA n 1 660 PRO n 1 661 HIS n 1 662 PRO n 1 663 PRO n 1 664 GLY n 1 665 GLY n 1 666 ASN n 1 667 THR n 1 668 TRP n 1 669 CYS n 1 670 THR n 1 671 ALA n 1 672 ALA n 1 673 MET n 1 674 ILE n 1 675 GLY n 1 676 ALA n 1 677 ARG n 1 678 ALA n 1 679 THR n 1 680 ASP n 1 681 LEU n 1 682 ILE n 1 683 LEU n 1 684 GLY n 1 685 LYS n 1 686 PRO n 1 687 LEU n 1 688 VAL n 1 689 ALA n 1 690 ASN n 1 691 LEU n 1 692 PRO n 1 693 PRO n 1 694 GLU n 1 695 ASP n 1 696 VAL n 1 697 PRO n 1 698 VAL n 1 699 PHE n 1 700 THR n 1 701 THR n 1 702 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 702 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Acanthamoeba polyphaga mimivirus' _entity_src_nat.pdbx_ncbi_taxonomy_id 212035 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FAD non-polymer . 'FLAVIN-ADENINE DINUCLEOTIDE' ? 'C27 H33 N9 O15 P2' 785.550 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 HIS 3 3 ? ? ? A . n A 1 4 ARG 4 4 ? ? ? A . n A 1 5 SER 5 5 ? ? ? A . n A 1 6 ARG 6 6 ? ? ? A . n A 1 7 CYS 7 7 ? ? ? A . n A 1 8 ASN 8 8 ? ? ? A . n A 1 9 CYS 9 9 ? ? ? A . n A 1 10 ASN 10 10 ? ? ? A . n A 1 11 ASP 11 11 ? ? ? A . n A 1 12 THR 12 12 ? ? ? A . n A 1 13 SER 13 13 ? ? ? A . n A 1 14 ASN 14 14 ? ? ? A . n A 1 15 SER 15 15 ? ? ? A . n A 1 16 ASN 16 16 ? ? ? A . n A 1 17 GLY 17 17 ? ? ? A . n A 1 18 SER 18 18 ? ? ? A . n A 1 19 GLN 19 19 ? ? ? A . n A 1 20 HIS 20 20 ? ? ? A . n A 1 21 GLY 21 21 ? ? ? A . n A 1 22 ILE 22 22 ? ? ? A . n A 1 23 ASN 23 23 ? ? ? A . n A 1 24 LEU 24 24 ? ? ? A . n A 1 25 PRO 25 25 ? ? ? A . n A 1 26 LEU 26 26 ? ? ? A . n A 1 27 ARG 27 27 ? ? ? A . n A 1 28 LYS 28 28 ? ? ? A . n A 1 29 ILE 29 29 ? ? ? A . n A 1 30 ASP 30 30 ? ? ? A . n A 1 31 THR 31 31 ? ? ? A . n A 1 32 TYR 32 32 ? ? ? A . n A 1 33 ASP 33 33 ? ? ? A . n A 1 34 PRO 34 34 ? ? ? A . n A 1 35 CYS 35 35 ? ? ? A . n A 1 36 VAL 36 36 ? ? ? A . n A 1 37 ASN 37 37 ? ? ? A . n A 1 38 CYS 38 38 ? ? ? A . n A 1 39 ARG 39 39 ? ? ? A . n A 1 40 VAL 40 40 ? ? ? A . n A 1 41 LYS 41 41 ? ? ? A . n A 1 42 PRO 42 42 ? ? ? A . n A 1 43 HIS 43 43 ? ? ? A . n A 1 44 LEU 44 44 ? ? ? A . n A 1 45 CYS 45 45 ? ? ? A . n A 1 46 PRO 46 46 ? ? ? A . n A 1 47 LYS 47 47 ? ? ? A . n A 1 48 PRO 48 48 ? ? ? A . n A 1 49 HIS 49 49 ? ? ? A . n A 1 50 PRO 50 50 ? ? ? A . n A 1 51 CYS 51 51 ? ? ? A . n A 1 52 PRO 52 52 ? ? ? A . n A 1 53 LYS 53 53 ? ? ? A . n A 1 54 PRO 54 54 ? ? ? A . n A 1 55 GLU 55 55 ? ? ? A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 ILE 63 63 63 ILE ILE A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 CYS 71 71 71 CYS CYS A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 TYR 76 76 76 TYR TYR A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 HIS 92 92 92 HIS HIS A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 ASN 96 96 96 ASN ASN A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 MET 104 104 104 MET MET A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 PHE 107 107 107 PHE PHE A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 TYR 110 110 110 TYR TYR A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASN 116 116 116 ASN ASN A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 PRO 123 123 123 PRO PRO A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 TYR 125 125 125 TYR TYR A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 TRP 127 127 127 TRP TRP A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 GLY 136 136 136 GLY GLY A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 TYR 138 138 138 TYR TYR A . n A 1 139 SER 139 139 139 SER SER A . n A 1 140 MET 140 140 140 MET MET A . n A 1 141 ARG 141 141 141 ARG ARG A . n A 1 142 ASN 142 142 142 ASN ASN A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 ALA 145 145 145 ALA ALA A . n A 1 146 HIS 146 146 146 HIS HIS A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 THR 154 154 154 THR THR A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ASN 157 157 157 ASN ASN A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ASN 160 160 160 ASN ASN A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 ASP 170 170 170 ASP ASP A . n A 1 171 ASN 171 171 171 ASN ASN A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 TRP 173 173 173 TRP TRP A . n A 1 174 PRO 174 174 174 PRO PRO A . n A 1 175 THR 175 175 175 THR THR A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 LYS 178 178 178 LYS LYS A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 ASP 181 181 181 ASP ASP A . n A 1 182 ILE 182 182 182 ILE ILE A . n A 1 183 LYS 183 183 183 LYS LYS A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 TYR 185 185 185 TYR TYR A . n A 1 186 PHE 186 186 186 PHE PHE A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 ARG 188 188 188 ARG ARG A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 ARG 197 197 197 ARG ARG A . n A 1 198 ASP 198 198 198 ASP ASP A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 VAL 202 202 202 VAL VAL A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 ASN 206 206 206 ASN ASN A . n A 1 207 THR 207 207 207 THR THR A . n A 1 208 ILE 208 208 208 ILE ILE A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 MET 212 212 212 MET MET A . n A 1 213 ARG 213 213 213 ARG ARG A . n A 1 214 VAL 214 214 214 VAL VAL A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 ASP 217 217 217 ASP ASP A . n A 1 218 GLN 218 218 218 GLN GLN A . n A 1 219 GLN 219 219 219 GLN GLN A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 SER 221 221 221 SER SER A . n A 1 222 SER 222 222 222 SER SER A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 VAL 224 224 224 VAL VAL A . n A 1 225 PRO 225 225 225 PRO PRO A . n A 1 226 VAL 226 226 226 VAL VAL A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 PHE 228 228 228 PHE PHE A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 ILE 230 230 230 ILE ILE A . n A 1 231 ASN 231 231 231 ASN ASN A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 ALA 233 233 233 ALA ALA A . n A 1 234 THR 234 234 234 THR THR A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 PRO 238 238 238 PRO PRO A . n A 1 239 ASN 239 239 239 ASN ASN A . n A 1 240 ILE 240 240 240 ILE ILE A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 GLN 242 242 242 GLN GLN A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 TYR 244 244 244 TYR TYR A . n A 1 245 GLN 245 245 245 GLN GLN A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 PRO 248 248 248 PRO PRO A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 VAL 250 250 250 VAL VAL A . n A 1 251 ASN 251 251 251 ASN ASN A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 ASN 253 253 253 ASN ASN A . n A 1 254 ASP 254 254 254 ASP ASP A . n A 1 255 TYR 255 255 255 TYR TYR A . n A 1 256 GLU 256 256 256 GLU GLU A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 ILE 258 258 258 ILE ILE A . n A 1 259 ASN 259 259 259 ASN ASN A . n A 1 260 SER 260 260 260 SER SER A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 CYS 262 262 262 CYS CYS A . n A 1 263 GLY 263 263 263 GLY GLY A . n A 1 264 PHE 264 264 264 PHE PHE A . n A 1 265 LYS 265 265 265 LYS LYS A . n A 1 266 SER 266 266 266 SER SER A . n A 1 267 TYR 267 267 267 TYR TYR A . n A 1 268 TYR 268 268 268 TYR TYR A . n A 1 269 VAL 269 269 269 VAL VAL A . n A 1 270 GLY 270 270 270 GLY GLY A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 ASN 272 272 272 ASN ASN A . n A 1 273 GLN 273 273 273 GLN GLN A . n A 1 274 LEU 274 274 274 LEU LEU A . n A 1 275 SER 275 275 275 SER SER A . n A 1 276 ASP 276 276 276 ASP ASP A . n A 1 277 GLY 277 277 277 GLY GLY A . n A 1 278 SER 278 278 278 SER SER A . n A 1 279 TYR 279 279 279 TYR TYR A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 ARG 281 281 281 ARG ARG A . n A 1 282 LYS 282 282 282 LYS LYS A . n A 1 283 TYR 283 283 283 TYR TYR A . n A 1 284 ALA 284 284 284 ALA ALA A . n A 1 285 GLY 285 285 285 GLY GLY A . n A 1 286 ASN 286 286 286 ASN ASN A . n A 1 287 THR 287 287 287 THR THR A . n A 1 288 TYR 288 288 288 TYR TYR A . n A 1 289 LEU 289 289 289 LEU LEU A . n A 1 290 ASN 290 290 290 ASN ASN A . n A 1 291 SER 291 291 291 SER SER A . n A 1 292 TYR 292 292 292 TYR TYR A . n A 1 293 TYR 293 293 293 TYR TYR A . n A 1 294 VAL 294 294 294 VAL VAL A . n A 1 295 ASP 295 295 295 ASP ASP A . n A 1 296 SER 296 296 296 SER SER A . n A 1 297 ASN 297 297 297 ASN ASN A . n A 1 298 GLY 298 298 298 GLY GLY A . n A 1 299 PHE 299 299 299 PHE PHE A . n A 1 300 GLY 300 300 300 GLY GLY A . n A 1 301 ILE 301 301 301 ILE ILE A . n A 1 302 GLY 302 302 302 GLY GLY A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 PHE 304 304 304 PHE PHE A . n A 1 305 SER 305 305 305 SER SER A . n A 1 306 ASN 306 306 306 ASN ASN A . n A 1 307 LEU 307 307 307 LEU LEU A . n A 1 308 ARG 308 308 308 ARG ARG A . n A 1 309 VAL 309 309 309 VAL VAL A . n A 1 310 ILE 310 310 310 ILE ILE A . n A 1 311 SER 311 311 311 SER SER A . n A 1 312 ASP 312 312 312 ASP ASP A . n A 1 313 ALA 313 313 313 ALA ALA A . n A 1 314 VAL 314 314 314 VAL VAL A . n A 1 315 VAL 315 315 315 VAL VAL A . n A 1 316 ASP 316 316 316 ASP ASP A . n A 1 317 ARG 317 317 317 ARG ARG A . n A 1 318 ILE 318 318 318 ILE ILE A . n A 1 319 HIS 319 319 319 HIS HIS A . n A 1 320 PHE 320 320 320 PHE PHE A . n A 1 321 GLU 321 321 321 GLU GLU A . n A 1 322 GLY 322 322 322 GLY GLY A . n A 1 323 GLN 323 323 323 GLN GLN A . n A 1 324 ARG 324 324 324 ARG ARG A . n A 1 325 ALA 325 325 325 ALA ALA A . n A 1 326 VAL 326 326 326 VAL VAL A . n A 1 327 SER 327 327 327 SER SER A . n A 1 328 VAL 328 328 328 VAL VAL A . n A 1 329 THR 329 329 329 THR THR A . n A 1 330 TYR 330 330 330 TYR TYR A . n A 1 331 ILE 331 331 331 ILE ILE A . n A 1 332 ASP 332 332 332 ASP ASP A . n A 1 333 LYS 333 333 333 LYS LYS A . n A 1 334 LYS 334 334 334 LYS LYS A . n A 1 335 GLY 335 335 335 GLY GLY A . n A 1 336 ASN 336 336 336 ASN ASN A . n A 1 337 LEU 337 337 337 LEU LEU A . n A 1 338 HIS 338 338 338 HIS HIS A . n A 1 339 SER 339 339 339 SER SER A . n A 1 340 VAL 340 340 340 VAL VAL A . n A 1 341 LYS 341 341 341 LYS LYS A . n A 1 342 VAL 342 342 342 VAL VAL A . n A 1 343 HIS 343 343 343 HIS HIS A . n A 1 344 LYS 344 344 344 LYS LYS A . n A 1 345 GLU 345 345 345 GLU GLU A . n A 1 346 VAL 346 346 346 VAL VAL A . n A 1 347 GLU 347 347 347 GLU GLU A . n A 1 348 ILE 348 348 348 ILE ILE A . n A 1 349 CYS 349 349 349 CYS CYS A . n A 1 350 SER 350 350 350 SER SER A . n A 1 351 GLY 351 351 351 GLY GLY A . n A 1 352 SER 352 352 352 SER SER A . n A 1 353 PHE 353 353 353 PHE PHE A . n A 1 354 PHE 354 354 354 PHE PHE A . n A 1 355 THR 355 355 355 THR THR A . n A 1 356 PRO 356 356 356 PRO PRO A . n A 1 357 THR 357 357 357 THR THR A . n A 1 358 ILE 358 358 358 ILE ILE A . n A 1 359 LEU 359 359 359 LEU LEU A . n A 1 360 GLN 360 360 360 GLN GLN A . n A 1 361 ARG 361 361 361 ARG ARG A . n A 1 362 SER 362 362 362 SER SER A . n A 1 363 GLY 363 363 363 GLY GLY A . n A 1 364 ILE 364 364 364 ILE ILE A . n A 1 365 GLY 365 365 365 GLY GLY A . n A 1 366 ASP 366 366 366 ASP ASP A . n A 1 367 PHE 367 367 367 PHE PHE A . n A 1 368 SER 368 368 368 SER SER A . n A 1 369 TYR 369 369 369 TYR TYR A . n A 1 370 LEU 370 370 370 LEU LEU A . n A 1 371 SER 371 371 371 SER SER A . n A 1 372 SER 372 372 372 SER SER A . n A 1 373 ILE 373 373 373 ILE ILE A . n A 1 374 GLY 374 374 374 GLY GLY A . n A 1 375 VAL 375 375 375 VAL VAL A . n A 1 376 PRO 376 376 376 PRO PRO A . n A 1 377 ASP 377 377 377 ASP ASP A . n A 1 378 LEU 378 378 378 LEU LEU A . n A 1 379 VAL 379 379 379 VAL VAL A . n A 1 380 TYR 380 380 380 TYR TYR A . n A 1 381 ASN 381 381 381 ASN ASN A . n A 1 382 ASN 382 382 382 ASN ASN A . n A 1 383 PRO 383 383 383 PRO PRO A . n A 1 384 LEU 384 384 384 LEU LEU A . n A 1 385 VAL 385 385 385 VAL VAL A . n A 1 386 GLY 386 386 386 GLY GLY A . n A 1 387 GLN 387 387 387 GLN GLN A . n A 1 388 GLY 388 388 388 GLY GLY A . n A 1 389 LEU 389 389 389 LEU LEU A . n A 1 390 ARG 390 390 390 ARG ARG A . n A 1 391 ASN 391 391 391 ASN ASN A . n A 1 392 HIS 392 392 392 HIS HIS A . n A 1 393 TYR 393 393 393 TYR TYR A . n A 1 394 SER 394 394 394 SER SER A . n A 1 395 PRO 395 395 395 PRO PRO A . n A 1 396 ILE 396 396 396 ILE ILE A . n A 1 397 THR 397 397 397 THR THR A . n A 1 398 GLN 398 398 398 GLN GLN A . n A 1 399 VAL 399 399 399 VAL VAL A . n A 1 400 SER 400 400 400 SER SER A . n A 1 401 VAL 401 401 401 VAL VAL A . n A 1 402 THR 402 402 402 THR THR A . n A 1 403 GLY 403 403 403 GLY GLY A . n A 1 404 PRO 404 404 404 PRO PRO A . n A 1 405 ASP 405 405 405 ASP ASP A . n A 1 406 ALA 406 406 406 ALA ALA A . n A 1 407 ALA 407 407 407 ALA ALA A . n A 1 408 ALA 408 408 408 ALA ALA A . n A 1 409 PHE 409 409 409 PHE PHE A . n A 1 410 LEU 410 410 410 LEU LEU A . n A 1 411 SER 411 411 411 SER SER A . n A 1 412 ASN 412 412 412 ASN ASN A . n A 1 413 THR 413 413 413 THR THR A . n A 1 414 ALA 414 414 414 ALA ALA A . n A 1 415 ALA 415 415 415 ALA ALA A . n A 1 416 GLY 416 416 416 GLY GLY A . n A 1 417 PRO 417 417 417 PRO PRO A . n A 1 418 THR 418 418 418 THR THR A . n A 1 419 ASN 419 419 419 ASN ASN A . n A 1 420 MET 420 420 420 MET MET A . n A 1 421 SER 421 421 421 SER SER A . n A 1 422 PHE 422 422 422 PHE PHE A . n A 1 423 ARG 423 423 423 ARG ARG A . n A 1 424 GLY 424 424 424 GLY GLY A . n A 1 425 ALA 425 425 425 ALA ALA A . n A 1 426 GLY 426 426 426 GLY GLY A . n A 1 427 MET 427 427 427 MET MET A . n A 1 428 LEU 428 428 428 LEU LEU A . n A 1 429 GLY 429 429 429 GLY GLY A . n A 1 430 TYR 430 430 430 TYR TYR A . n A 1 431 HIS 431 431 431 HIS HIS A . n A 1 432 LYS 432 432 432 LYS LYS A . n A 1 433 LEU 433 433 433 LEU LEU A . n A 1 434 GLU 434 434 434 GLU GLU A . n A 1 435 PRO 435 435 435 PRO PRO A . n A 1 436 ASN 436 436 436 ASN ASN A . n A 1 437 LYS 437 437 437 LYS LYS A . n A 1 438 PRO 438 438 438 PRO PRO A . n A 1 439 SER 439 439 439 SER SER A . n A 1 440 ASN 440 440 440 ASN ASN A . n A 1 441 ALA 441 441 441 ALA ALA A . n A 1 442 GLY 442 442 442 GLY GLY A . n A 1 443 SER 443 443 443 SER SER A . n A 1 444 VAL 444 444 444 VAL VAL A . n A 1 445 THR 445 445 445 THR THR A . n A 1 446 TYR 446 446 446 TYR TYR A . n A 1 447 ARG 447 447 447 ARG ARG A . n A 1 448 LYS 448 448 448 LYS LYS A . n A 1 449 TYR 449 449 449 TYR TYR A . n A 1 450 GLU 450 450 450 GLU GLU A . n A 1 451 LEU 451 451 451 LEU LEU A . n A 1 452 LEU 452 452 452 LEU LEU A . n A 1 453 VAL 453 453 453 VAL VAL A . n A 1 454 THR 454 454 454 THR THR A . n A 1 455 GLY 455 455 455 GLY GLY A . n A 1 456 GLY 456 456 456 GLY GLY A . n A 1 457 VAL 457 457 457 VAL VAL A . n A 1 458 ALA 458 458 458 ALA ALA A . n A 1 459 ILE 459 459 459 ILE ILE A . n A 1 460 SER 460 460 460 SER SER A . n A 1 461 ALA 461 461 461 ALA ALA A . n A 1 462 ASP 462 462 462 ASP ASP A . n A 1 463 GLN 463 463 463 GLN GLN A . n A 1 464 GLN 464 464 464 GLN GLN A . n A 1 465 TYR 465 465 465 TYR TYR A . n A 1 466 LEU 466 466 466 LEU LEU A . n A 1 467 SER 467 467 467 SER SER A . n A 1 468 GLY 468 468 468 GLY GLY A . n A 1 469 ILE 469 469 469 ILE ILE A . n A 1 470 SER 470 470 470 SER SER A . n A 1 471 SER 471 471 471 SER SER A . n A 1 472 SER 472 472 472 SER SER A . n A 1 473 THR 473 473 473 THR THR A . n A 1 474 GLY 474 474 474 GLY GLY A . n A 1 475 ASN 475 475 475 ASN ASN A . n A 1 476 TYR 476 476 476 TYR TYR A . n A 1 477 PHE 477 477 477 PHE PHE A . n A 1 478 ALA 478 478 478 ALA ALA A . n A 1 479 LEU 479 479 479 LEU LEU A . n A 1 480 ILE 480 480 480 ILE ILE A . n A 1 481 ALA 481 481 481 ALA ALA A . n A 1 482 ASP 482 482 482 ASP ASP A . n A 1 483 ASP 483 483 483 ASP ASP A . n A 1 484 ILE 484 484 484 ILE ILE A . n A 1 485 ARG 485 485 485 ARG ARG A . n A 1 486 PHE 486 486 486 PHE PHE A . n A 1 487 ALA 487 487 487 ALA ALA A . n A 1 488 PRO 488 488 488 PRO PRO A . n A 1 489 VAL 489 489 489 VAL VAL A . n A 1 490 GLY 490 490 490 GLY GLY A . n A 1 491 TYR 491 491 491 TYR TYR A . n A 1 492 ILE 492 492 492 ILE ILE A . n A 1 493 LYS 493 493 493 LYS LYS A . n A 1 494 ILE 494 494 494 ILE ILE A . n A 1 495 GLY 495 495 495 GLY GLY A . n A 1 496 THR 496 496 496 THR THR A . n A 1 497 PRO 497 497 497 PRO PRO A . n A 1 498 ASN 498 498 498 ASN ASN A . n A 1 499 PHE 499 499 499 PHE PHE A . n A 1 500 PRO 500 500 500 PRO PRO A . n A 1 501 ARG 501 501 501 ARG ARG A . n A 1 502 ASP 502 502 502 ASP ASP A . n A 1 503 THR 503 503 503 THR THR A . n A 1 504 PRO 504 504 504 PRO PRO A . n A 1 505 LYS 505 505 505 LYS LYS A . n A 1 506 ILE 506 506 506 ILE ILE A . n A 1 507 PHE 507 507 507 PHE PHE A . n A 1 508 PHE 508 508 508 PHE PHE A . n A 1 509 ASN 509 509 509 ASN ASN A . n A 1 510 THR 510 510 510 THR THR A . n A 1 511 PHE 511 511 511 PHE PHE A . n A 1 512 VAL 512 512 512 VAL VAL A . n A 1 513 ASN 513 513 513 ASN ASN A . n A 1 514 TYR 514 514 514 TYR TYR A . n A 1 515 THR 515 515 515 THR THR A . n A 1 516 PRO 516 516 516 PRO PRO A . n A 1 517 THR 517 517 517 THR THR A . n A 1 518 THR 518 518 518 THR THR A . n A 1 519 ASP 519 519 519 ASP ASP A . n A 1 520 PRO 520 520 520 PRO PRO A . n A 1 521 ALA 521 521 521 ALA ALA A . n A 1 522 ASP 522 522 522 ASP ASP A . n A 1 523 GLN 523 523 523 GLN GLN A . n A 1 524 GLN 524 524 524 GLN GLN A . n A 1 525 TRP 525 525 525 TRP TRP A . n A 1 526 PRO 526 526 526 PRO PRO A . n A 1 527 VAL 527 527 527 VAL VAL A . n A 1 528 ALA 528 528 528 ALA ALA A . n A 1 529 GLN 529 529 529 GLN GLN A . n A 1 530 LYS 530 530 530 LYS LYS A . n A 1 531 THR 531 531 531 THR THR A . n A 1 532 LEU 532 532 532 LEU LEU A . n A 1 533 ALA 533 533 533 ALA ALA A . n A 1 534 PRO 534 534 534 PRO PRO A . n A 1 535 LEU 535 535 535 LEU LEU A . n A 1 536 ILE 536 536 536 ILE ILE A . n A 1 537 SER 537 537 537 SER SER A . n A 1 538 ALA 538 538 538 ALA ALA A . n A 1 539 LEU 539 539 539 LEU LEU A . n A 1 540 LEU 540 540 540 LEU LEU A . n A 1 541 GLY 541 541 541 GLY GLY A . n A 1 542 TYR 542 542 542 TYR TYR A . n A 1 543 ASP 543 543 543 ASP ASP A . n A 1 544 ALA 544 544 544 ALA ALA A . n A 1 545 ILE 545 545 545 ILE ILE A . n A 1 546 TYR 546 546 546 TYR TYR A . n A 1 547 GLN 547 547 547 GLN GLN A . n A 1 548 ILE 548 548 548 ILE ILE A . n A 1 549 VAL 549 549 549 VAL VAL A . n A 1 550 GLN 550 550 550 GLN GLN A . n A 1 551 GLN 551 551 551 GLN GLN A . n A 1 552 MET 552 552 552 MET MET A . n A 1 553 LYS 553 553 553 LYS LYS A . n A 1 554 VAL 554 554 554 VAL VAL A . n A 1 555 VAL 555 555 555 VAL VAL A . n A 1 556 ALA 556 556 556 ALA ALA A . n A 1 557 VAL 557 557 557 VAL VAL A . n A 1 558 ASN 558 558 558 ASN ASN A . n A 1 559 ALA 559 559 559 ALA ALA A . n A 1 560 GLY 560 560 560 GLY GLY A . n A 1 561 PHE 561 561 561 PHE PHE A . n A 1 562 ASN 562 562 562 ASN ASN A . n A 1 563 VAL 563 563 563 VAL VAL A . n A 1 564 THR 564 564 564 THR THR A . n A 1 565 LEU 565 565 565 LEU LEU A . n A 1 566 GLN 566 566 566 GLN GLN A . n A 1 567 MET 567 567 567 MET MET A . n A 1 568 ALA 568 568 568 ALA ALA A . n A 1 569 TYR 569 569 569 TYR TYR A . n A 1 570 PRO 570 570 570 PRO PRO A . n A 1 571 PRO 571 571 571 PRO PRO A . n A 1 572 ASN 572 572 572 ASN ASN A . n A 1 573 ASP 573 573 573 ASP ASP A . n A 1 574 LEU 574 574 574 LEU LEU A . n A 1 575 LEU 575 575 575 LEU LEU A . n A 1 576 VAL 576 576 576 VAL VAL A . n A 1 577 GLU 577 577 577 GLU GLU A . n A 1 578 LEU 578 578 578 LEU LEU A . n A 1 579 HIS 579 579 579 HIS HIS A . n A 1 580 ASN 580 580 580 ASN ASN A . n A 1 581 GLY 581 581 581 GLY GLY A . n A 1 582 LEU 582 582 582 LEU LEU A . n A 1 583 ASN 583 583 583 ASN ASN A . n A 1 584 THR 584 584 584 THR THR A . n A 1 585 TYR 585 585 585 TYR TYR A . n A 1 586 GLY 586 586 586 GLY GLY A . n A 1 587 ILE 587 587 587 ILE ILE A . n A 1 588 ASN 588 588 588 ASN ASN A . n A 1 589 TRP 589 589 589 TRP TRP A . n A 1 590 TRP 590 590 590 TRP TRP A . n A 1 591 HIS 591 591 591 HIS HIS A . n A 1 592 TYR 592 592 592 TYR TYR A . n A 1 593 PHE 593 593 593 PHE PHE A . n A 1 594 VAL 594 594 594 VAL VAL A . n A 1 595 PRO 595 595 595 PRO PRO A . n A 1 596 SER 596 596 596 SER SER A . n A 1 597 LEU 597 597 597 LEU LEU A . n A 1 598 VAL 598 598 598 VAL VAL A . n A 1 599 ASN 599 599 599 ASN ASN A . n A 1 600 ASP 600 600 600 ASP ASP A . n A 1 601 ASP 601 601 601 ASP ASP A . n A 1 602 THR 602 602 602 THR THR A . n A 1 603 PRO 603 603 603 PRO PRO A . n A 1 604 ALA 604 604 604 ALA ALA A . n A 1 605 GLY 605 605 605 GLY GLY A . n A 1 606 LYS 606 606 606 LYS LYS A . n A 1 607 LEU 607 607 607 LEU LEU A . n A 1 608 PHE 608 608 608 PHE PHE A . n A 1 609 ALA 609 609 609 ALA ALA A . n A 1 610 SER 610 610 610 SER SER A . n A 1 611 THR 611 611 611 THR THR A . n A 1 612 LEU 612 612 612 LEU LEU A . n A 1 613 SER 613 613 613 SER SER A . n A 1 614 LYS 614 614 614 LYS LYS A . n A 1 615 LEU 615 615 615 LEU LEU A . n A 1 616 SER 616 616 616 SER SER A . n A 1 617 TYR 617 617 617 TYR TYR A . n A 1 618 TYR 618 618 618 TYR TYR A . n A 1 619 PRO 619 619 619 PRO PRO A . n A 1 620 ARG 620 620 620 ARG ARG A . n A 1 621 SER 621 621 621 SER SER A . n A 1 622 GLY 622 622 622 GLY GLY A . n A 1 623 ALA 623 623 623 ALA ALA A . n A 1 624 HIS 624 624 624 HIS HIS A . n A 1 625 LEU 625 625 625 LEU LEU A . n A 1 626 ASP 626 626 626 ASP ASP A . n A 1 627 SER 627 627 627 SER SER A . n A 1 628 HIS 628 628 628 HIS HIS A . n A 1 629 GLN 629 629 629 GLN GLN A . n A 1 630 SER 630 630 630 SER SER A . n A 1 631 CYS 631 631 631 CYS CYS A . n A 1 632 SER 632 632 632 SER SER A . n A 1 633 CYS 633 633 633 CYS CYS A . n A 1 634 SER 634 634 634 SER SER A . n A 1 635 ILE 635 635 635 ILE ILE A . n A 1 636 GLY 636 636 636 GLY GLY A . n A 1 637 GLY 637 637 637 GLY GLY A . n A 1 638 THR 638 638 638 THR THR A . n A 1 639 VAL 639 639 639 VAL VAL A . n A 1 640 ASP 640 640 640 ASP ASP A . n A 1 641 THR 641 641 641 THR THR A . n A 1 642 GLU 642 642 642 GLU GLU A . n A 1 643 LEU 643 643 643 LEU LEU A . n A 1 644 LYS 644 644 644 LYS LYS A . n A 1 645 VAL 645 645 645 VAL VAL A . n A 1 646 ILE 646 646 646 ILE ILE A . n A 1 647 GLY 647 647 647 GLY GLY A . n A 1 648 VAL 648 648 648 VAL VAL A . n A 1 649 GLU 649 649 649 GLU GLU A . n A 1 650 ASN 650 650 650 ASN ASN A . n A 1 651 VAL 651 651 651 VAL VAL A . n A 1 652 ARG 652 652 652 ARG ARG A . n A 1 653 VAL 653 653 653 VAL VAL A . n A 1 654 THR 654 654 654 THR THR A . n A 1 655 ASP 655 655 655 ASP ASP A . n A 1 656 LEU 656 656 656 LEU LEU A . n A 1 657 SER 657 657 657 SER SER A . n A 1 658 ALA 658 658 658 ALA ALA A . n A 1 659 ALA 659 659 659 ALA ALA A . n A 1 660 PRO 660 660 660 PRO PRO A . n A 1 661 HIS 661 661 661 HIS HIS A . n A 1 662 PRO 662 662 662 PRO PRO A . n A 1 663 PRO 663 663 663 PRO PRO A . n A 1 664 GLY 664 664 664 GLY GLY A . n A 1 665 GLY 665 665 665 GLY GLY A . n A 1 666 ASN 666 666 666 ASN ASN A . n A 1 667 THR 667 667 667 THR THR A . n A 1 668 TRP 668 668 668 TRP TRP A . n A 1 669 CYS 669 669 669 CYS CYS A . n A 1 670 THR 670 670 670 THR THR A . n A 1 671 ALA 671 671 671 ALA ALA A . n A 1 672 ALA 672 672 672 ALA ALA A . n A 1 673 MET 673 673 673 MET MET A . n A 1 674 ILE 674 674 674 ILE ILE A . n A 1 675 GLY 675 675 675 GLY GLY A . n A 1 676 ALA 676 676 676 ALA ALA A . n A 1 677 ARG 677 677 677 ARG ARG A . n A 1 678 ALA 678 678 678 ALA ALA A . n A 1 679 THR 679 679 679 THR THR A . n A 1 680 ASP 680 680 680 ASP ASP A . n A 1 681 LEU 681 681 681 LEU LEU A . n A 1 682 ILE 682 682 682 ILE ILE A . n A 1 683 LEU 683 683 683 LEU LEU A . n A 1 684 GLY 684 684 684 GLY GLY A . n A 1 685 LYS 685 685 685 LYS LYS A . n A 1 686 PRO 686 686 686 PRO PRO A . n A 1 687 LEU 687 687 687 LEU LEU A . n A 1 688 VAL 688 688 688 VAL VAL A . n A 1 689 ALA 689 689 689 ALA ALA A . n A 1 690 ASN 690 690 690 ASN ASN A . n A 1 691 LEU 691 691 691 LEU LEU A . n A 1 692 PRO 692 692 692 PRO PRO A . n A 1 693 PRO 693 693 693 PRO PRO A . n A 1 694 GLU 694 694 694 GLU GLU A . n A 1 695 ASP 695 695 695 ASP ASP A . n A 1 696 VAL 696 696 696 VAL VAL A . n A 1 697 PRO 697 697 697 PRO PRO A . n A 1 698 VAL 698 698 698 VAL VAL A . n A 1 699 PHE 699 699 699 PHE PHE A . n A 1 700 THR 700 700 700 THR THR A . n A 1 701 THR 701 701 ? ? ? A . n A 1 702 SER 702 702 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FAD _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 901 _pdbx_nonpoly_scheme.auth_seq_num 901 _pdbx_nonpoly_scheme.pdb_mon_id FAD _pdbx_nonpoly_scheme.auth_mon_id FAD _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.18.2_3874: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7YX5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7YX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7YX5 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 7YX5 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.006 ? 10260 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.784 ? 14032 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.361 ? 1406 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.053 ? 1564 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.006 ? 1812 ? f_plane_restr ? ? # _struct.entry_id 7YX5 _struct.title 'Structure of the Mimivirus genomic fibre in its relaxed 5-start helix form' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7YX5 _struct_keywords.text 'Mimivirus, Genomic fibre, Cytoplasmic infectious cycle, 1.2 Mb dsDNA, VIRUS, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E5L7Z5_MIMIV _struct_ref.pdbx_db_accession E5L7Z5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAHRSRCNCNDTSNSNGSQHGINLPLRKIDTYDPCVNCRVKPHLCPKPHPCPKPENLEADIVIIGAGAAGCVLAYYLTKF SDLKIILLEAGHTHFNDPVVTDPMGFFGKYNPPNENIRMSQNPSYAWQPALEPDTGAYSMRNVVAHGLAVGGSTAINQLN YIVGGRTVFDNDWPTGWKYDDIKKYFRRVLADISPIRDGTKVNLTNTILESMRVLADQQVSSGVPVDFLINKATGGLPNI EQTYQGAPIVNLNDYEGINSVCGFKSYYVGVNQLSDGSYIRKYAGNTYLNSYYVDSNGFGIGKFSNLRVISDAVVDRIHF EGQRAVSVTYIDKKGNLHSVKVHKEVEICSGSFFTPTILQRSGIGDFSYLSSIGVPDLVYNNPLVGQGLRNHYSPITQVS VTGPDAAAFLSNTAAGPTNMSFRGAGMLGYHKLEPNKPSNAGSVTYRKYELLVTGGVAISADQQYLSGISSSTGNYFALI ADDIRFAPVGYIKIGTPNFPRDTPKIFFNTFVNYTPTTDPADQQWPVAQKTLAPLISALLGYDAIYQIVQQMKVVAVNAG FNVTLQMAYPPNDLLVELHNGLNTYGINWWHYFVPSLVNDDTPAGKLFASTLSKLSYYPRSGAHLDSHQSCSCSIGGTVD TELKVIGVENVRVTDLSAAPHPPGGNTWCTAAMIGARATDLILGKPLVANLPPEDVPVFTTS ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7YX5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 702 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E5L7Z5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 702 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 702 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 30-meric _pdbx_struct_assembly.oligomeric_count 30 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,10,11,12,13,14,15,16,17,18,19,2,20,21,22,23,24,25,26,27,28,29,3,30,4,5,6,7,8,9 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'Negative staining, Cryo-EM, Cryo-Tomogrammes' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.000000 0.000000 -0.000000 0.00000 0.000000 1.000000 0.000000 -0.00000 -0.000000 0.000000 1.000000 0.00000 2 'point symmetry operation' ? ? 0.913723 -0.406338 -0.000000 107.31981 0.406338 0.913723 0.000000 -69.44196 -0.000000 0.000000 1.000000 -31.11000 3 'point symmetry operation' ? ? 0.913723 0.406338 -0.000000 -69.84366 -0.406338 0.913723 0.000000 107.05882 -0.000000 0.000000 1.000000 31.11000 4 'point symmetry operation' ? ? -0.104095 -0.994567 -0.000000 456.60825 0.994567 -0.104095 -0.000000 24.68793 0.000000 0.000000 1.000000 -31.11000 5 'point symmetry operation' ? ? 0.309017 -0.951057 -0.000000 357.40137 0.951057 0.309017 -0.000000 -55.92053 0.000000 0.000000 1.000000 -0.00000 6 'point symmetry operation' ? ? 0.668806 -0.743437 -0.000000 233.99950 0.743437 0.668806 0.000000 -89.26280 0.000000 0.000000 1.000000 31.11000 7 'point symmetry operation' ? ? -0.978057 -0.208338 -0.000000 475.02146 0.208338 -0.978057 -0.000000 385.96871 0.000000 -0.000000 1.000000 -31.11000 8 'point symmetry operation' ? ? -0.809017 -0.587785 -0.000000 521.02805 0.587785 -0.809017 -0.000000 266.70798 0.000000 -0.000000 1.000000 0.00000 9 'point symmetry operation' ? ? -0.500378 -0.865807 -0.000000 514.60516 0.865807 -0.500378 -0.000000 139.04250 0.000000 -0.000000 1.000000 31.11000 10 'point symmetry operation' ? ? -0.500378 0.865807 0.000000 137.11302 -0.865807 -0.500378 -0.000000 515.12262 -0.000000 -0.000000 1.000000 -31.11000 11 'point symmetry operation' ? ? -0.809017 0.587785 0.000000 264.75353 -0.587785 -0.809017 -0.000000 522.02390 -0.000000 -0.000000 1.000000 0.00000 12 'point symmetry operation' ? ? -0.978057 0.208338 0.000000 384.18583 -0.208338 -0.978057 -0.000000 476.46456 -0.000000 -0.000000 1.000000 31.11000 13 'point symmetry operation' ? ? 0.668806 0.743437 0.000000 -90.13910 -0.743437 0.668806 0.000000 233.66334 -0.000000 0.000000 1.000000 -31.11000 14 'point symmetry operation' ? ? 0.309017 0.951057 0.000000 -57.25952 -0.951057 0.309017 0.000000 357.18930 -0.000000 -0.000000 1.000000 0.00000 15 'point symmetry operation' ? ? -0.104095 0.994567 0.000000 22.97660 -0.994567 -0.104095 0.000000 456.69756 -0.000000 -0.000000 1.000000 31.11000 16 'point symmetry operation' ? ? 0.913723 -0.406338 -0.000000 107.31981 -0.406338 -0.913723 -0.000000 505.44222 -0.000000 -0.000000 -1.000000 467.11006 17 'point symmetry operation' ? ? 1.000000 0.000000 0.000000 0.00000 0.000000 -1.000000 -0.000000 436.00026 0.000000 -0.000000 -1.000000 436.00006 18 'point symmetry operation' ? ? 0.913723 0.406338 0.000000 -69.84366 0.406338 -0.913723 -0.000000 328.94144 0.000000 -0.000000 -1.000000 404.89006 19 'point symmetry operation' ? ? -0.104095 -0.994567 -0.000000 456.60825 -0.994567 0.104095 0.000000 411.31233 -0.000000 0.000000 -1.000000 467.11006 20 'point symmetry operation' ? ? 0.309017 -0.951057 -0.000000 357.40137 -0.951057 -0.309017 0.000000 491.92079 -0.000000 0.000000 -1.000000 436.00006 21 'point symmetry operation' ? ? 0.668806 -0.743437 -0.000000 233.99950 -0.743437 -0.668806 -0.000000 525.26306 -0.000000 -0.000000 -1.000000 404.89006 22 'point symmetry operation' ? ? -0.978057 -0.208338 0.000000 475.02146 -0.208338 0.978057 0.000000 50.03155 0.000000 0.000000 -1.000000 467.11006 23 'point symmetry operation' ? ? -0.809017 -0.587785 0.000000 521.02805 -0.587785 0.809017 0.000000 169.29228 0.000000 0.000000 -1.000000 436.00006 24 'point symmetry operation' ? ? -0.500378 -0.865807 -0.000000 514.60516 -0.865807 0.500378 0.000000 296.95776 -0.000000 0.000000 -1.000000 404.89006 25 'point symmetry operation' ? ? -0.500378 0.865807 0.000000 137.11302 0.865807 0.500378 0.000000 -79.12236 0.000000 0.000000 -1.000000 467.11006 26 'point symmetry operation' ? ? -0.809017 0.587785 0.000000 264.75353 0.587785 0.809017 0.000000 -86.02364 0.000000 0.000000 -1.000000 436.00006 27 'point symmetry operation' ? ? -0.978057 0.208338 0.000000 384.18583 0.208338 0.978057 0.000000 -40.46430 0.000000 0.000000 -1.000000 404.89006 28 'point symmetry operation' ? ? 0.668806 0.743437 0.000000 -90.13910 0.743437 -0.668806 -0.000000 202.33691 0.000000 -0.000000 -1.000000 467.11006 29 'point symmetry operation' ? ? 0.309017 0.951057 0.000000 -57.25952 0.951057 -0.309017 -0.000000 78.81096 0.000000 -0.000000 -1.000000 436.00006 30 'point symmetry operation' ? ? -0.104095 0.994567 0.000000 22.97660 0.994567 0.104095 -0.000000 -20.69730 0.000000 -0.000000 -1.000000 404.89006 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 67 ? PHE A 80 ? GLY A 67 PHE A 80 1 ? 14 HELX_P HELX_P2 AA2 ASP A 97 ? ASP A 102 ? ASP A 97 ASP A 102 1 ? 6 HELX_P HELX_P3 AA3 PRO A 103 ? GLY A 108 ? PRO A 103 GLY A 108 5 ? 6 HELX_P HELX_P4 AA4 PRO A 112 ? ASN A 116 ? PRO A 112 ASN A 116 5 ? 5 HELX_P HELX_P5 AA5 GLY A 151 ? ASN A 157 ? GLY A 151 ASN A 157 5 ? 7 HELX_P HELX_P6 AA6 GLY A 165 ? TRP A 173 ? GLY A 165 TRP A 173 1 ? 9 HELX_P HELX_P7 AA7 LYS A 178 ? SER A 194 ? LYS A 178 SER A 194 1 ? 17 HELX_P HELX_P8 AA8 VAL A 202 ? SER A 221 ? VAL A 202 SER A 221 1 ? 20 HELX_P HELX_P9 AA9 TYR A 283 ? LEU A 289 ? TYR A 283 LEU A 289 1 ? 7 HELX_P HELX_P10 AB1 ILE A 301 ? SER A 305 ? ILE A 301 SER A 305 5 ? 5 HELX_P HELX_P11 AB2 SER A 350 ? GLY A 363 ? SER A 350 GLY A 363 1 ? 14 HELX_P HELX_P12 AB3 ASP A 366 ? GLY A 374 ? ASP A 366 GLY A 374 1 ? 9 HELX_P HELX_P13 AB4 ASP A 405 ? LEU A 410 ? ASP A 405 LEU A 410 1 ? 6 HELX_P HELX_P14 AB5 SER A 460 ? GLY A 468 ? SER A 460 GLY A 468 1 ? 9 HELX_P HELX_P15 AB6 PRO A 520 ? GLN A 523 ? PRO A 520 GLN A 523 5 ? 4 HELX_P HELX_P16 AB7 GLN A 524 ? ALA A 559 ? GLN A 524 ALA A 559 1 ? 36 HELX_P HELX_P17 AB8 PRO A 571 ? GLY A 586 ? PRO A 571 GLY A 586 1 ? 16 HELX_P HELX_P18 AB9 ILE A 587 ? PHE A 593 ? ILE A 587 PHE A 593 5 ? 7 HELX_P HELX_P19 AC1 VAL A 594 ? ASN A 599 ? VAL A 594 ASN A 599 1 ? 6 HELX_P HELX_P20 AC2 THR A 602 ? SER A 616 ? THR A 602 SER A 616 1 ? 15 HELX_P HELX_P21 AC3 SER A 616 ? GLY A 622 ? SER A 616 GLY A 622 1 ? 7 HELX_P HELX_P22 AC4 ASP A 655 ? ALA A 659 ? ASP A 655 ALA A 659 5 ? 5 HELX_P HELX_P23 AC5 TRP A 668 ? GLY A 684 ? TRP A 668 GLY A 684 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 424 A . ? GLY 424 A ALA 425 A ? ALA 425 A 1 -6.82 2 TYR 569 A . ? TYR 569 A PRO 570 A ? PRO 570 A 1 0.34 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 3 ? AA5 ? 2 ? AA6 ? 4 ? AA7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 307 ? ILE A 310 ? LEU A 307 ILE A 310 AA1 2 ILE A 85 ? LEU A 88 ? ILE A 85 LEU A 88 AA1 3 ILE A 61 ? ILE A 64 ? ILE A 61 ILE A 64 AA1 4 VAL A 346 ? ILE A 348 ? VAL A 346 ILE A 348 AA1 5 VAL A 651 ? VAL A 653 ? VAL A 651 VAL A 653 AA2 1 ALA A 126 ? TRP A 127 ? ALA A 126 TRP A 127 AA2 2 HIS A 146 ? GLY A 147 ? HIS A 146 GLY A 147 AA3 1 VAL A 271 ? GLN A 273 ? VAL A 271 GLN A 273 AA3 2 TYR A 279 ? ARG A 281 ? TYR A 279 ARG A 281 AA4 1 VAL A 314 ? GLU A 321 ? VAL A 314 GLU A 321 AA4 2 ARG A 324 ? ILE A 331 ? ARG A 324 ILE A 331 AA4 3 LEU A 337 ? LYS A 341 ? LEU A 337 LYS A 341 AA5 1 TYR A 393 ? PRO A 395 ? TYR A 393 PRO A 395 AA5 2 ALA A 623 ? LEU A 625 ? ALA A 623 LEU A 625 AA6 1 TYR A 449 ? GLY A 455 ? TYR A 449 GLY A 455 AA6 2 TYR A 476 ? ASP A 483 ? TYR A 476 ASP A 483 AA6 3 GLN A 398 ? THR A 402 ? GLN A 398 THR A 402 AA6 4 THR A 564 ? GLN A 566 ? THR A 564 GLN A 566 AA7 1 TYR A 491 ? LYS A 493 ? TYR A 491 LYS A 493 AA7 2 LYS A 505 ? PHE A 507 ? LYS A 505 PHE A 507 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ARG A 308 ? O ARG A 308 N ILE A 85 ? N ILE A 85 AA1 2 3 O LEU A 88 ? O LEU A 88 N ILE A 63 ? N ILE A 63 AA1 3 4 N VAL A 62 ? N VAL A 62 O GLU A 347 ? O GLU A 347 AA1 4 5 N VAL A 346 ? N VAL A 346 O ARG A 652 ? O ARG A 652 AA2 1 2 N TRP A 127 ? N TRP A 127 O HIS A 146 ? O HIS A 146 AA3 1 2 N ASN A 272 ? N ASN A 272 O ILE A 280 ? O ILE A 280 AA4 1 2 N GLU A 321 ? N GLU A 321 O ARG A 324 ? O ARG A 324 AA4 2 3 N VAL A 328 ? N VAL A 328 O VAL A 340 ? O VAL A 340 AA5 1 2 N SER A 394 ? N SER A 394 O HIS A 624 ? O HIS A 624 AA6 1 2 N THR A 454 ? N THR A 454 O ALA A 478 ? O ALA A 478 AA6 2 3 O PHE A 477 ? O PHE A 477 N VAL A 399 ? N VAL A 399 AA6 3 4 N THR A 402 ? N THR A 402 O THR A 564 ? O THR A 564 AA7 1 2 N LYS A 493 ? N LYS A 493 O LYS A 505 ? O LYS A 505 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 PHE _pdbx_validate_close_contact.auth_seq_id_1 354 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OG1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 357 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 60 ? ? -130.10 -35.79 2 1 ASN A 116 ? ? -67.44 99.27 3 1 LEU A 159 ? ? 63.54 69.77 4 1 SER A 194 ? ? 54.84 71.67 5 1 SER A 222 ? ? 69.50 -5.65 6 1 THR A 234 ? ? -93.03 47.56 7 1 TYR A 244 ? ? -172.37 -178.17 8 1 ASN A 253 ? ? -94.15 52.19 9 1 ASN A 306 ? ? -91.13 50.74 10 1 VAL A 379 ? ? -120.48 -60.73 11 1 PRO A 395 ? ? -68.80 -176.76 12 1 ALA A 425 ? ? -142.35 19.34 13 1 ASN A 436 ? ? -100.25 73.12 14 1 ASN A 475 ? ? -140.55 44.12 15 1 PRO A 497 ? ? -81.33 44.10 16 1 THR A 510 ? ? -103.97 -68.72 17 1 PHE A 511 ? ? -103.20 65.55 18 1 PRO A 526 ? ? -83.33 36.98 19 1 SER A 616 ? ? -56.57 -7.32 20 1 LEU A 643 ? ? 68.57 -4.47 # _em_3d_fitting.entry_id 7YX5 _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7YX5 _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 11958 _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.5 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Mimivirus genomic fibre in its relaxed 5-start helix form' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7YX5 _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max 3000 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 7YX5 _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7YX5 _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A HIS 3 ? A HIS 3 4 1 Y 1 A ARG 4 ? A ARG 4 5 1 Y 1 A SER 5 ? A SER 5 6 1 Y 1 A ARG 6 ? A ARG 6 7 1 Y 1 A CYS 7 ? A CYS 7 8 1 Y 1 A ASN 8 ? A ASN 8 9 1 Y 1 A CYS 9 ? A CYS 9 10 1 Y 1 A ASN 10 ? A ASN 10 11 1 Y 1 A ASP 11 ? A ASP 11 12 1 Y 1 A THR 12 ? A THR 12 13 1 Y 1 A SER 13 ? A SER 13 14 1 Y 1 A ASN 14 ? A ASN 14 15 1 Y 1 A SER 15 ? A SER 15 16 1 Y 1 A ASN 16 ? A ASN 16 17 1 Y 1 A GLY 17 ? A GLY 17 18 1 Y 1 A SER 18 ? A SER 18 19 1 Y 1 A GLN 19 ? A GLN 19 20 1 Y 1 A HIS 20 ? A HIS 20 21 1 Y 1 A GLY 21 ? A GLY 21 22 1 Y 1 A ILE 22 ? A ILE 22 23 1 Y 1 A ASN 23 ? A ASN 23 24 1 Y 1 A LEU 24 ? A LEU 24 25 1 Y 1 A PRO 25 ? A PRO 25 26 1 Y 1 A LEU 26 ? A LEU 26 27 1 Y 1 A ARG 27 ? A ARG 27 28 1 Y 1 A LYS 28 ? A LYS 28 29 1 Y 1 A ILE 29 ? A ILE 29 30 1 Y 1 A ASP 30 ? A ASP 30 31 1 Y 1 A THR 31 ? A THR 31 32 1 Y 1 A TYR 32 ? A TYR 32 33 1 Y 1 A ASP 33 ? A ASP 33 34 1 Y 1 A PRO 34 ? A PRO 34 35 1 Y 1 A CYS 35 ? A CYS 35 36 1 Y 1 A VAL 36 ? A VAL 36 37 1 Y 1 A ASN 37 ? A ASN 37 38 1 Y 1 A CYS 38 ? A CYS 38 39 1 Y 1 A ARG 39 ? A ARG 39 40 1 Y 1 A VAL 40 ? A VAL 40 41 1 Y 1 A LYS 41 ? A LYS 41 42 1 Y 1 A PRO 42 ? A PRO 42 43 1 Y 1 A HIS 43 ? A HIS 43 44 1 Y 1 A LEU 44 ? A LEU 44 45 1 Y 1 A CYS 45 ? A CYS 45 46 1 Y 1 A PRO 46 ? A PRO 46 47 1 Y 1 A LYS 47 ? A LYS 47 48 1 Y 1 A PRO 48 ? A PRO 48 49 1 Y 1 A HIS 49 ? A HIS 49 50 1 Y 1 A PRO 50 ? A PRO 50 51 1 Y 1 A CYS 51 ? A CYS 51 52 1 Y 1 A PRO 52 ? A PRO 52 53 1 Y 1 A LYS 53 ? A LYS 53 54 1 Y 1 A PRO 54 ? A PRO 54 55 1 Y 1 A GLU 55 ? A GLU 55 56 1 Y 1 A THR 701 ? A THR 701 57 1 Y 1 A SER 702 ? A SER 702 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 FAD PA P N R 88 FAD O1A O N N 89 FAD O2A O N N 90 FAD O5B O N N 91 FAD C5B C N N 92 FAD C4B C N R 93 FAD O4B O N N 94 FAD C3B C N S 95 FAD O3B O N N 96 FAD C2B C N R 97 FAD O2B O N N 98 FAD C1B C N R 99 FAD N9A N Y N 100 FAD C8A C Y N 101 FAD N7A N Y N 102 FAD C5A C Y N 103 FAD C6A C Y N 104 FAD N6A N N N 105 FAD N1A N Y N 106 FAD C2A C Y N 107 FAD N3A N Y N 108 FAD C4A C Y N 109 FAD N1 N N N 110 FAD C2 C N N 111 FAD O2 O N N 112 FAD N3 N N N 113 FAD C4 C N N 114 FAD O4 O N N 115 FAD C4X C N N 116 FAD N5 N N N 117 FAD C5X C Y N 118 FAD C6 C Y N 119 FAD C7 C Y N 120 FAD C7M C N N 121 FAD C8 C Y N 122 FAD C8M C N N 123 FAD C9 C Y N 124 FAD C9A C Y N 125 FAD N10 N N N 126 FAD C10 C N N 127 FAD "C1'" C N N 128 FAD "C2'" C N S 129 FAD "O2'" O N N 130 FAD "C3'" C N S 131 FAD "O3'" O N N 132 FAD "C4'" C N R 133 FAD "O4'" O N N 134 FAD "C5'" C N N 135 FAD "O5'" O N N 136 FAD P P N R 137 FAD O1P O N N 138 FAD O2P O N N 139 FAD O3P O N N 140 FAD HOA2 H N N 141 FAD H51A H N N 142 FAD H52A H N N 143 FAD H4B H N N 144 FAD H3B H N N 145 FAD HO3A H N N 146 FAD H2B H N N 147 FAD HO2A H N N 148 FAD H1B H N N 149 FAD H8A H N N 150 FAD H61A H N N 151 FAD H62A H N N 152 FAD H2A H N N 153 FAD HN3 H N N 154 FAD H6 H N N 155 FAD HM71 H N N 156 FAD HM72 H N N 157 FAD HM73 H N N 158 FAD HM81 H N N 159 FAD HM82 H N N 160 FAD HM83 H N N 161 FAD H9 H N N 162 FAD "H1'1" H N N 163 FAD "H1'2" H N N 164 FAD "H2'" H N N 165 FAD "HO2'" H N N 166 FAD "H3'" H N N 167 FAD "HO3'" H N N 168 FAD "H4'" H N N 169 FAD "HO4'" H N N 170 FAD "H5'1" H N N 171 FAD "H5'2" H N N 172 FAD HOP2 H N N 173 GLN N N N N 174 GLN CA C N S 175 GLN C C N N 176 GLN O O N N 177 GLN CB C N N 178 GLN CG C N N 179 GLN CD C N N 180 GLN OE1 O N N 181 GLN NE2 N N N 182 GLN OXT O N N 183 GLN H H N N 184 GLN H2 H N N 185 GLN HA H N N 186 GLN HB2 H N N 187 GLN HB3 H N N 188 GLN HG2 H N N 189 GLN HG3 H N N 190 GLN HE21 H N N 191 GLN HE22 H N N 192 GLN HXT H N N 193 GLU N N N N 194 GLU CA C N S 195 GLU C C N N 196 GLU O O N N 197 GLU CB C N N 198 GLU CG C N N 199 GLU CD C N N 200 GLU OE1 O N N 201 GLU OE2 O N N 202 GLU OXT O N N 203 GLU H H N N 204 GLU H2 H N N 205 GLU HA H N N 206 GLU HB2 H N N 207 GLU HB3 H N N 208 GLU HG2 H N N 209 GLU HG3 H N N 210 GLU HE2 H N N 211 GLU HXT H N N 212 GLY N N N N 213 GLY CA C N N 214 GLY C C N N 215 GLY O O N N 216 GLY OXT O N N 217 GLY H H N N 218 GLY H2 H N N 219 GLY HA2 H N N 220 GLY HA3 H N N 221 GLY HXT H N N 222 HIS N N N N 223 HIS CA C N S 224 HIS C C N N 225 HIS O O N N 226 HIS CB C N N 227 HIS CG C Y N 228 HIS ND1 N Y N 229 HIS CD2 C Y N 230 HIS CE1 C Y N 231 HIS NE2 N Y N 232 HIS OXT O N N 233 HIS H H N N 234 HIS H2 H N N 235 HIS HA H N N 236 HIS HB2 H N N 237 HIS HB3 H N N 238 HIS HD1 H N N 239 HIS HD2 H N N 240 HIS HE1 H N N 241 HIS HE2 H N N 242 HIS HXT H N N 243 ILE N N N N 244 ILE CA C N S 245 ILE C C N N 246 ILE O O N N 247 ILE CB C N S 248 ILE CG1 C N N 249 ILE CG2 C N N 250 ILE CD1 C N N 251 ILE OXT O N N 252 ILE H H N N 253 ILE H2 H N N 254 ILE HA H N N 255 ILE HB H N N 256 ILE HG12 H N N 257 ILE HG13 H N N 258 ILE HG21 H N N 259 ILE HG22 H N N 260 ILE HG23 H N N 261 ILE HD11 H N N 262 ILE HD12 H N N 263 ILE HD13 H N N 264 ILE HXT H N N 265 LEU N N N N 266 LEU CA C N S 267 LEU C C N N 268 LEU O O N N 269 LEU CB C N N 270 LEU CG C N N 271 LEU CD1 C N N 272 LEU CD2 C N N 273 LEU OXT O N N 274 LEU H H N N 275 LEU H2 H N N 276 LEU HA H N N 277 LEU HB2 H N N 278 LEU HB3 H N N 279 LEU HG H N N 280 LEU HD11 H N N 281 LEU HD12 H N N 282 LEU HD13 H N N 283 LEU HD21 H N N 284 LEU HD22 H N N 285 LEU HD23 H N N 286 LEU HXT H N N 287 LYS N N N N 288 LYS CA C N S 289 LYS C C N N 290 LYS O O N N 291 LYS CB C N N 292 LYS CG C N N 293 LYS CD C N N 294 LYS CE C N N 295 LYS NZ N N N 296 LYS OXT O N N 297 LYS H H N N 298 LYS H2 H N N 299 LYS HA H N N 300 LYS HB2 H N N 301 LYS HB3 H N N 302 LYS HG2 H N N 303 LYS HG3 H N N 304 LYS HD2 H N N 305 LYS HD3 H N N 306 LYS HE2 H N N 307 LYS HE3 H N N 308 LYS HZ1 H N N 309 LYS HZ2 H N N 310 LYS HZ3 H N N 311 LYS HXT H N N 312 MET N N N N 313 MET CA C N S 314 MET C C N N 315 MET O O N N 316 MET CB C N N 317 MET CG C N N 318 MET SD S N N 319 MET CE C N N 320 MET OXT O N N 321 MET H H N N 322 MET H2 H N N 323 MET HA H N N 324 MET HB2 H N N 325 MET HB3 H N N 326 MET HG2 H N N 327 MET HG3 H N N 328 MET HE1 H N N 329 MET HE2 H N N 330 MET HE3 H N N 331 MET HXT H N N 332 PHE N N N N 333 PHE CA C N S 334 PHE C C N N 335 PHE O O N N 336 PHE CB C N N 337 PHE CG C Y N 338 PHE CD1 C Y N 339 PHE CD2 C Y N 340 PHE CE1 C Y N 341 PHE CE2 C Y N 342 PHE CZ C Y N 343 PHE OXT O N N 344 PHE H H N N 345 PHE H2 H N N 346 PHE HA H N N 347 PHE HB2 H N N 348 PHE HB3 H N N 349 PHE HD1 H N N 350 PHE HD2 H N N 351 PHE HE1 H N N 352 PHE HE2 H N N 353 PHE HZ H N N 354 PHE HXT H N N 355 PRO N N N N 356 PRO CA C N S 357 PRO C C N N 358 PRO O O N N 359 PRO CB C N N 360 PRO CG C N N 361 PRO CD C N N 362 PRO OXT O N N 363 PRO H H N N 364 PRO HA H N N 365 PRO HB2 H N N 366 PRO HB3 H N N 367 PRO HG2 H N N 368 PRO HG3 H N N 369 PRO HD2 H N N 370 PRO HD3 H N N 371 PRO HXT H N N 372 SER N N N N 373 SER CA C N S 374 SER C C N N 375 SER O O N N 376 SER CB C N N 377 SER OG O N N 378 SER OXT O N N 379 SER H H N N 380 SER H2 H N N 381 SER HA H N N 382 SER HB2 H N N 383 SER HB3 H N N 384 SER HG H N N 385 SER HXT H N N 386 THR N N N N 387 THR CA C N S 388 THR C C N N 389 THR O O N N 390 THR CB C N R 391 THR OG1 O N N 392 THR CG2 C N N 393 THR OXT O N N 394 THR H H N N 395 THR H2 H N N 396 THR HA H N N 397 THR HB H N N 398 THR HG1 H N N 399 THR HG21 H N N 400 THR HG22 H N N 401 THR HG23 H N N 402 THR HXT H N N 403 TRP N N N N 404 TRP CA C N S 405 TRP C C N N 406 TRP O O N N 407 TRP CB C N N 408 TRP CG C Y N 409 TRP CD1 C Y N 410 TRP CD2 C Y N 411 TRP NE1 N Y N 412 TRP CE2 C Y N 413 TRP CE3 C Y N 414 TRP CZ2 C Y N 415 TRP CZ3 C Y N 416 TRP CH2 C Y N 417 TRP OXT O N N 418 TRP H H N N 419 TRP H2 H N N 420 TRP HA H N N 421 TRP HB2 H N N 422 TRP HB3 H N N 423 TRP HD1 H N N 424 TRP HE1 H N N 425 TRP HE3 H N N 426 TRP HZ2 H N N 427 TRP HZ3 H N N 428 TRP HH2 H N N 429 TRP HXT H N N 430 TYR N N N N 431 TYR CA C N S 432 TYR C C N N 433 TYR O O N N 434 TYR CB C N N 435 TYR CG C Y N 436 TYR CD1 C Y N 437 TYR CD2 C Y N 438 TYR CE1 C Y N 439 TYR CE2 C Y N 440 TYR CZ C Y N 441 TYR OH O N N 442 TYR OXT O N N 443 TYR H H N N 444 TYR H2 H N N 445 TYR HA H N N 446 TYR HB2 H N N 447 TYR HB3 H N N 448 TYR HD1 H N N 449 TYR HD2 H N N 450 TYR HE1 H N N 451 TYR HE2 H N N 452 TYR HH H N N 453 TYR HXT H N N 454 VAL N N N N 455 VAL CA C N S 456 VAL C C N N 457 VAL O O N N 458 VAL CB C N N 459 VAL CG1 C N N 460 VAL CG2 C N N 461 VAL OXT O N N 462 VAL H H N N 463 VAL H2 H N N 464 VAL HA H N N 465 VAL HB H N N 466 VAL HG11 H N N 467 VAL HG12 H N N 468 VAL HG13 H N N 469 VAL HG21 H N N 470 VAL HG22 H N N 471 VAL HG23 H N N 472 VAL HXT H N N 473 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FAD PA O1A doub N N 83 FAD PA O2A sing N N 84 FAD PA O5B sing N N 85 FAD PA O3P sing N N 86 FAD O2A HOA2 sing N N 87 FAD O5B C5B sing N N 88 FAD C5B C4B sing N N 89 FAD C5B H51A sing N N 90 FAD C5B H52A sing N N 91 FAD C4B O4B sing N N 92 FAD C4B C3B sing N N 93 FAD C4B H4B sing N N 94 FAD O4B C1B sing N N 95 FAD C3B O3B sing N N 96 FAD C3B C2B sing N N 97 FAD C3B H3B sing N N 98 FAD O3B HO3A sing N N 99 FAD C2B O2B sing N N 100 FAD C2B C1B sing N N 101 FAD C2B H2B sing N N 102 FAD O2B HO2A sing N N 103 FAD C1B N9A sing N N 104 FAD C1B H1B sing N N 105 FAD N9A C8A sing Y N 106 FAD N9A C4A sing Y N 107 FAD C8A N7A doub Y N 108 FAD C8A H8A sing N N 109 FAD N7A C5A sing Y N 110 FAD C5A C6A sing Y N 111 FAD C5A C4A doub Y N 112 FAD C6A N6A sing N N 113 FAD C6A N1A doub Y N 114 FAD N6A H61A sing N N 115 FAD N6A H62A sing N N 116 FAD N1A C2A sing Y N 117 FAD C2A N3A doub Y N 118 FAD C2A H2A sing N N 119 FAD N3A C4A sing Y N 120 FAD N1 C2 sing N N 121 FAD N1 C10 doub N N 122 FAD C2 O2 doub N N 123 FAD C2 N3 sing N N 124 FAD N3 C4 sing N N 125 FAD N3 HN3 sing N N 126 FAD C4 O4 doub N N 127 FAD C4 C4X sing N N 128 FAD C4X N5 doub N N 129 FAD C4X C10 sing N N 130 FAD N5 C5X sing N N 131 FAD C5X C6 doub Y N 132 FAD C5X C9A sing Y N 133 FAD C6 C7 sing Y N 134 FAD C6 H6 sing N N 135 FAD C7 C7M sing N N 136 FAD C7 C8 doub Y N 137 FAD C7M HM71 sing N N 138 FAD C7M HM72 sing N N 139 FAD C7M HM73 sing N N 140 FAD C8 C8M sing N N 141 FAD C8 C9 sing Y N 142 FAD C8M HM81 sing N N 143 FAD C8M HM82 sing N N 144 FAD C8M HM83 sing N N 145 FAD C9 C9A doub Y N 146 FAD C9 H9 sing N N 147 FAD C9A N10 sing N N 148 FAD N10 C10 sing N N 149 FAD N10 "C1'" sing N N 150 FAD "C1'" "C2'" sing N N 151 FAD "C1'" "H1'1" sing N N 152 FAD "C1'" "H1'2" sing N N 153 FAD "C2'" "O2'" sing N N 154 FAD "C2'" "C3'" sing N N 155 FAD "C2'" "H2'" sing N N 156 FAD "O2'" "HO2'" sing N N 157 FAD "C3'" "O3'" sing N N 158 FAD "C3'" "C4'" sing N N 159 FAD "C3'" "H3'" sing N N 160 FAD "O3'" "HO3'" sing N N 161 FAD "C4'" "O4'" sing N N 162 FAD "C4'" "C5'" sing N N 163 FAD "C4'" "H4'" sing N N 164 FAD "O4'" "HO4'" sing N N 165 FAD "C5'" "O5'" sing N N 166 FAD "C5'" "H5'1" sing N N 167 FAD "C5'" "H5'2" sing N N 168 FAD "O5'" P sing N N 169 FAD P O1P doub N N 170 FAD P O2P sing N N 171 FAD P O3P sing N N 172 FAD O2P HOP2 sing N N 173 GLN N CA sing N N 174 GLN N H sing N N 175 GLN N H2 sing N N 176 GLN CA C sing N N 177 GLN CA CB sing N N 178 GLN CA HA sing N N 179 GLN C O doub N N 180 GLN C OXT sing N N 181 GLN CB CG sing N N 182 GLN CB HB2 sing N N 183 GLN CB HB3 sing N N 184 GLN CG CD sing N N 185 GLN CG HG2 sing N N 186 GLN CG HG3 sing N N 187 GLN CD OE1 doub N N 188 GLN CD NE2 sing N N 189 GLN NE2 HE21 sing N N 190 GLN NE2 HE22 sing N N 191 GLN OXT HXT sing N N 192 GLU N CA sing N N 193 GLU N H sing N N 194 GLU N H2 sing N N 195 GLU CA C sing N N 196 GLU CA CB sing N N 197 GLU CA HA sing N N 198 GLU C O doub N N 199 GLU C OXT sing N N 200 GLU CB CG sing N N 201 GLU CB HB2 sing N N 202 GLU CB HB3 sing N N 203 GLU CG CD sing N N 204 GLU CG HG2 sing N N 205 GLU CG HG3 sing N N 206 GLU CD OE1 doub N N 207 GLU CD OE2 sing N N 208 GLU OE2 HE2 sing N N 209 GLU OXT HXT sing N N 210 GLY N CA sing N N 211 GLY N H sing N N 212 GLY N H2 sing N N 213 GLY CA C sing N N 214 GLY CA HA2 sing N N 215 GLY CA HA3 sing N N 216 GLY C O doub N N 217 GLY C OXT sing N N 218 GLY OXT HXT sing N N 219 HIS N CA sing N N 220 HIS N H sing N N 221 HIS N H2 sing N N 222 HIS CA C sing N N 223 HIS CA CB sing N N 224 HIS CA HA sing N N 225 HIS C O doub N N 226 HIS C OXT sing N N 227 HIS CB CG sing N N 228 HIS CB HB2 sing N N 229 HIS CB HB3 sing N N 230 HIS CG ND1 sing Y N 231 HIS CG CD2 doub Y N 232 HIS ND1 CE1 doub Y N 233 HIS ND1 HD1 sing N N 234 HIS CD2 NE2 sing Y N 235 HIS CD2 HD2 sing N N 236 HIS CE1 NE2 sing Y N 237 HIS CE1 HE1 sing N N 238 HIS NE2 HE2 sing N N 239 HIS OXT HXT sing N N 240 ILE N CA sing N N 241 ILE N H sing N N 242 ILE N H2 sing N N 243 ILE CA C sing N N 244 ILE CA CB sing N N 245 ILE CA HA sing N N 246 ILE C O doub N N 247 ILE C OXT sing N N 248 ILE CB CG1 sing N N 249 ILE CB CG2 sing N N 250 ILE CB HB sing N N 251 ILE CG1 CD1 sing N N 252 ILE CG1 HG12 sing N N 253 ILE CG1 HG13 sing N N 254 ILE CG2 HG21 sing N N 255 ILE CG2 HG22 sing N N 256 ILE CG2 HG23 sing N N 257 ILE CD1 HD11 sing N N 258 ILE CD1 HD12 sing N N 259 ILE CD1 HD13 sing N N 260 ILE OXT HXT sing N N 261 LEU N CA sing N N 262 LEU N H sing N N 263 LEU N H2 sing N N 264 LEU CA C sing N N 265 LEU CA CB sing N N 266 LEU CA HA sing N N 267 LEU C O doub N N 268 LEU C OXT sing N N 269 LEU CB CG sing N N 270 LEU CB HB2 sing N N 271 LEU CB HB3 sing N N 272 LEU CG CD1 sing N N 273 LEU CG CD2 sing N N 274 LEU CG HG sing N N 275 LEU CD1 HD11 sing N N 276 LEU CD1 HD12 sing N N 277 LEU CD1 HD13 sing N N 278 LEU CD2 HD21 sing N N 279 LEU CD2 HD22 sing N N 280 LEU CD2 HD23 sing N N 281 LEU OXT HXT sing N N 282 LYS N CA sing N N 283 LYS N H sing N N 284 LYS N H2 sing N N 285 LYS CA C sing N N 286 LYS CA CB sing N N 287 LYS CA HA sing N N 288 LYS C O doub N N 289 LYS C OXT sing N N 290 LYS CB CG sing N N 291 LYS CB HB2 sing N N 292 LYS CB HB3 sing N N 293 LYS CG CD sing N N 294 LYS CG HG2 sing N N 295 LYS CG HG3 sing N N 296 LYS CD CE sing N N 297 LYS CD HD2 sing N N 298 LYS CD HD3 sing N N 299 LYS CE NZ sing N N 300 LYS CE HE2 sing N N 301 LYS CE HE3 sing N N 302 LYS NZ HZ1 sing N N 303 LYS NZ HZ2 sing N N 304 LYS NZ HZ3 sing N N 305 LYS OXT HXT sing N N 306 MET N CA sing N N 307 MET N H sing N N 308 MET N H2 sing N N 309 MET CA C sing N N 310 MET CA CB sing N N 311 MET CA HA sing N N 312 MET C O doub N N 313 MET C OXT sing N N 314 MET CB CG sing N N 315 MET CB HB2 sing N N 316 MET CB HB3 sing N N 317 MET CG SD sing N N 318 MET CG HG2 sing N N 319 MET CG HG3 sing N N 320 MET SD CE sing N N 321 MET CE HE1 sing N N 322 MET CE HE2 sing N N 323 MET CE HE3 sing N N 324 MET OXT HXT sing N N 325 PHE N CA sing N N 326 PHE N H sing N N 327 PHE N H2 sing N N 328 PHE CA C sing N N 329 PHE CA CB sing N N 330 PHE CA HA sing N N 331 PHE C O doub N N 332 PHE C OXT sing N N 333 PHE CB CG sing N N 334 PHE CB HB2 sing N N 335 PHE CB HB3 sing N N 336 PHE CG CD1 doub Y N 337 PHE CG CD2 sing Y N 338 PHE CD1 CE1 sing Y N 339 PHE CD1 HD1 sing N N 340 PHE CD2 CE2 doub Y N 341 PHE CD2 HD2 sing N N 342 PHE CE1 CZ doub Y N 343 PHE CE1 HE1 sing N N 344 PHE CE2 CZ sing Y N 345 PHE CE2 HE2 sing N N 346 PHE CZ HZ sing N N 347 PHE OXT HXT sing N N 348 PRO N CA sing N N 349 PRO N CD sing N N 350 PRO N H sing N N 351 PRO CA C sing N N 352 PRO CA CB sing N N 353 PRO CA HA sing N N 354 PRO C O doub N N 355 PRO C OXT sing N N 356 PRO CB CG sing N N 357 PRO CB HB2 sing N N 358 PRO CB HB3 sing N N 359 PRO CG CD sing N N 360 PRO CG HG2 sing N N 361 PRO CG HG3 sing N N 362 PRO CD HD2 sing N N 363 PRO CD HD3 sing N N 364 PRO OXT HXT sing N N 365 SER N CA sing N N 366 SER N H sing N N 367 SER N H2 sing N N 368 SER CA C sing N N 369 SER CA CB sing N N 370 SER CA HA sing N N 371 SER C O doub N N 372 SER C OXT sing N N 373 SER CB OG sing N N 374 SER CB HB2 sing N N 375 SER CB HB3 sing N N 376 SER OG HG sing N N 377 SER OXT HXT sing N N 378 THR N CA sing N N 379 THR N H sing N N 380 THR N H2 sing N N 381 THR CA C sing N N 382 THR CA CB sing N N 383 THR CA HA sing N N 384 THR C O doub N N 385 THR C OXT sing N N 386 THR CB OG1 sing N N 387 THR CB CG2 sing N N 388 THR CB HB sing N N 389 THR OG1 HG1 sing N N 390 THR CG2 HG21 sing N N 391 THR CG2 HG22 sing N N 392 THR CG2 HG23 sing N N 393 THR OXT HXT sing N N 394 TRP N CA sing N N 395 TRP N H sing N N 396 TRP N H2 sing N N 397 TRP CA C sing N N 398 TRP CA CB sing N N 399 TRP CA HA sing N N 400 TRP C O doub N N 401 TRP C OXT sing N N 402 TRP CB CG sing N N 403 TRP CB HB2 sing N N 404 TRP CB HB3 sing N N 405 TRP CG CD1 doub Y N 406 TRP CG CD2 sing Y N 407 TRP CD1 NE1 sing Y N 408 TRP CD1 HD1 sing N N 409 TRP CD2 CE2 doub Y N 410 TRP CD2 CE3 sing Y N 411 TRP NE1 CE2 sing Y N 412 TRP NE1 HE1 sing N N 413 TRP CE2 CZ2 sing Y N 414 TRP CE3 CZ3 doub Y N 415 TRP CE3 HE3 sing N N 416 TRP CZ2 CH2 doub Y N 417 TRP CZ2 HZ2 sing N N 418 TRP CZ3 CH2 sing Y N 419 TRP CZ3 HZ3 sing N N 420 TRP CH2 HH2 sing N N 421 TRP OXT HXT sing N N 422 TYR N CA sing N N 423 TYR N H sing N N 424 TYR N H2 sing N N 425 TYR CA C sing N N 426 TYR CA CB sing N N 427 TYR CA HA sing N N 428 TYR C O doub N N 429 TYR C OXT sing N N 430 TYR CB CG sing N N 431 TYR CB HB2 sing N N 432 TYR CB HB3 sing N N 433 TYR CG CD1 doub Y N 434 TYR CG CD2 sing Y N 435 TYR CD1 CE1 sing Y N 436 TYR CD1 HD1 sing N N 437 TYR CD2 CE2 doub Y N 438 TYR CD2 HD2 sing N N 439 TYR CE1 CZ doub Y N 440 TYR CE1 HE1 sing N N 441 TYR CE2 CZ sing Y N 442 TYR CE2 HE2 sing N N 443 TYR CZ OH sing N N 444 TYR OH HH sing N N 445 TYR OXT HXT sing N N 446 VAL N CA sing N N 447 VAL N H sing N N 448 VAL N H2 sing N N 449 VAL CA C sing N N 450 VAL CA CB sing N N 451 VAL CA HA sing N N 452 VAL C O doub N N 453 VAL C OXT sing N N 454 VAL CB CG1 sing N N 455 VAL CB CG2 sing N N 456 VAL CB HB sing N N 457 VAL CG1 HG11 sing N N 458 VAL CG1 HG12 sing N N 459 VAL CG1 HG13 sing N N 460 VAL CG2 HG21 sing N N 461 VAL CG2 HG22 sing N N 462 VAL CG2 HG23 sing N N 463 VAL OXT HXT sing N N 464 # _em_admin.entry_id 7YX5 _em_admin.current_status REL _em_admin.deposition_date 2022-02-15 _em_admin.deposition_site PDBE _em_admin.last_update 2024-07-17 _em_admin.map_release_date 2022-08-10 _em_admin.title 'Structure of the Mimivirus genomic fibre in its relaxed 5-start helix form' # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration 40 _em_buffer_component.concentration_units mM _em_buffer_component.formula '(HOCH2)3CNH2' _em_buffer_component.name 'Tris buffer' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 212035 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Acanthamoeba polyphaga mimivirus' _em_entity_assembly_naturalsource.strain Reunion _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -23.975 _em_helical_entity.axial_rise_per_subunit 31.11 _em_helical_entity.axial_symmetry D5 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 50.6 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? _em_image_recording.avg_electron_dose_per_subtomogram ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? ? ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? ? ? 8 'MODEL REFINEMENT' ? ? ? ? ? ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council (ERC)' France 832601 1 'Agence Nationale de la Recherche (ANR)' France ANR-16-CE11-0033-01 2 'German Research Foundation (DFG)' France 'INST 152/772-1|152/774-1|152/775-1|152/776-1' 3 'Wellcome Trust' France 107806/Z/15/Z 4 'German Federal Ministry for Education and Research' France 05K18BHA 5 'Alexander von Humboldt Foundation' France 'FRA 1200789 HFST-P' 6 'Agence Nationale de la Recherche (ANR)' France ANR-10-INBS-04 7 # _atom_sites.entry_id 7YX5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_