HEADER IMMUNE SYSTEM 15-FEB-22 7YXB TITLE MHC-II DYNAMICS ARE MAINTAINED IN HLA-DR ALLOTYPES TO ENSURE CATALYZED TITLE 2 PEPTIDE EXCHANGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: MHC CLASS II ANTIGEN DRA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HLA CLASS II HISTOCOMPATIBILITY ANTIGEN DR BETA CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 SYNONYM: MHC CLASS II ANTIGEN; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CLIP PEPTIDE; COMPND 13 CHAIN: G, H; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-DRA, HLA-DRA1; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFASTBACDUAL-SF9; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: HLA-DRB1; SOURCE 14 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PFASTBACDUAL-SF9; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 274590; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PFASTBACDUAL-SF9 KEYWDS HLA-DR4, CLIP PEPTIDE, MHCII, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.ROSKE,E.T.ABUALROUS,C.FREUND REVDAT 4 07-FEB-24 7YXB 1 REMARK REVDAT 3 11-OCT-23 7YXB 1 JRNL REVDAT 2 17-MAY-23 7YXB 1 TITLE JRNL REVDAT 1 22-FEB-23 7YXB 0 JRNL AUTH E.T.ABUALROUS,S.STOLZENBERG,J.STICHT,M.WIECZOREK,Y.ROSKE, JRNL AUTH 2 M.GUNTHER,S.DAHN,B.B.BOESEN,M.M.CALVO,C.BIESE,F.KUPPLER, JRNL AUTH 3 A.MEDINA-GARCIA,M.ALVARO-BENITO,T.HOFER,F.NOE,C.FREUND JRNL TITL MHC-II DYNAMICS ARE MAINTAINED IN HLA-DR ALLOTYPES TO ENSURE JRNL TITL 2 CATALYZED PEPTIDE EXCHANGE. JRNL REF NAT.CHEM.BIOL. V. 19 1196 2023 JRNL REFN ESSN 1552-4469 JRNL PMID 37142807 JRNL DOI 10.1038/S41589-023-01316-3 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 67078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0800 - 5.1643 0.98 4508 146 0.1755 0.2244 REMARK 3 2 5.1643 - 4.1000 1.00 4425 143 0.1244 0.1436 REMARK 3 3 4.1000 - 3.5820 0.99 4386 142 0.1499 0.1843 REMARK 3 4 3.5820 - 3.2546 1.00 4373 141 0.1731 0.2044 REMARK 3 5 3.2546 - 3.0214 0.99 4355 141 0.1861 0.2048 REMARK 3 6 3.0214 - 2.8433 1.00 4330 140 0.1982 0.2793 REMARK 3 7 2.8433 - 2.7009 0.99 4376 141 0.2095 0.2564 REMARK 3 8 2.7009 - 2.5834 0.99 4292 139 0.2213 0.2552 REMARK 3 9 2.5834 - 2.4839 0.99 4275 138 0.2342 0.2803 REMARK 3 10 2.4839 - 2.3982 0.99 4334 140 0.2442 0.2894 REMARK 3 11 2.3982 - 2.3232 1.00 4313 139 0.2652 0.2990 REMARK 3 12 2.3232 - 2.2568 0.99 4310 140 0.2590 0.2614 REMARK 3 13 2.2568 - 2.1974 0.99 4294 137 0.2679 0.2884 REMARK 3 14 2.1974 - 2.1438 0.98 4266 139 0.2931 0.3647 REMARK 3 15 2.1438 - 2.0951 0.96 4142 133 0.3047 0.3303 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6690 REMARK 3 ANGLE : 0.741 9070 REMARK 3 CHIRALITY : 0.050 958 REMARK 3 PLANARITY : 0.005 1184 REMARK 3 DIHEDRAL : 8.503 4300 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 181) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8322 14.9817 -11.7425 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.1572 REMARK 3 T33: 0.2723 T12: -0.0121 REMARK 3 T13: 0.0346 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 2.4497 L22: 0.6589 REMARK 3 L33: 0.6471 L12: 0.3742 REMARK 3 L13: 0.4493 L23: 0.0265 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: 0.1017 S13: -0.2591 REMARK 3 S21: 0.0055 S22: 0.0631 S23: -0.0745 REMARK 3 S31: 0.0845 S32: 0.0439 S33: -0.0600 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 192) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3106 29.8071 -13.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.2111 T22: 0.1409 REMARK 3 T33: 0.2463 T12: 0.0169 REMARK 3 T13: 0.0165 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.8062 L22: 0.9317 REMARK 3 L33: 0.7088 L12: 0.8851 REMARK 3 L13: 0.1514 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 0.1037 S13: 0.1718 REMARK 3 S21: -0.0858 S22: 0.0497 S23: 0.0525 REMARK 3 S31: -0.0810 S32: 0.0391 S33: 0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 181) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9439 32.2935 -39.0667 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.5687 REMARK 3 T33: 0.2326 T12: 0.0437 REMARK 3 T13: 0.0347 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.3750 L22: 1.6934 REMARK 3 L33: 1.8983 L12: 1.6398 REMARK 3 L13: 1.3211 L23: 0.4156 REMARK 3 S TENSOR REMARK 3 S11: -0.1122 S12: 0.6100 S13: 0.0971 REMARK 3 S21: -0.1504 S22: 0.1686 S23: 0.0201 REMARK 3 S31: -0.3087 S32: 0.0761 S33: -0.0583 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 3 THROUGH 193) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6911 16.9470 -36.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.3482 T22: 0.4542 REMARK 3 T33: 0.3509 T12: 0.0542 REMARK 3 T13: 0.0677 T23: -0.1412 REMARK 3 L TENSOR REMARK 3 L11: 3.1396 L22: 0.2155 REMARK 3 L33: 1.8426 L12: 0.5375 REMARK 3 L13: 0.9243 L23: -0.4971 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: 0.6504 S13: -0.3916 REMARK 3 S21: -0.1014 S22: 0.1788 S23: -0.0923 REMARK 3 S31: 0.0085 S32: 0.2087 S33: -0.1617 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'G' AND RESID 5 THROUGH 19) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6614 8.5255 -11.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.2950 T22: 0.2358 REMARK 3 T33: 0.3758 T12: -0.0554 REMARK 3 T13: 0.0369 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 4.0911 L22: 5.4489 REMARK 3 L33: 1.4086 L12: -0.3592 REMARK 3 L13: 0.2814 L23: 2.7186 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.0765 S13: -0.3525 REMARK 3 S21: 0.0516 S22: 0.0611 S23: 0.3183 REMARK 3 S31: 0.3316 S32: -0.2693 S33: -0.0145 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'H' AND RESID 1 THROUGH 19) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1676 20.8995 -58.0693 REMARK 3 T TENSOR REMARK 3 T11: 0.5259 T22: 0.9983 REMARK 3 T33: 0.3209 T12: -0.1622 REMARK 3 T13: -0.0088 T23: -0.1214 REMARK 3 L TENSOR REMARK 3 L11: 1.3989 L22: 4.0122 REMARK 3 L33: 2.5847 L12: -0.7203 REMARK 3 L13: 0.2342 L23: -0.6502 REMARK 3 S TENSOR REMARK 3 S11: -0.2479 S12: 0.5550 S13: 0.0693 REMARK 3 S21: -0.4926 S22: 0.6542 S23: -0.0013 REMARK 3 S31: -0.3319 S32: 0.7215 S33: -0.3185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67120 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 44.081 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.560 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X5X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M AMMONIUMCITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.27000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.27000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.44550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.74250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.44550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.74250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.27000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.44550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.74250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.27000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.44550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.74250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 182 REMARK 465 PRO A 183 REMARK 465 SER A 184 REMARK 465 PRO A 185 REMARK 465 LEU A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 GLU A 191 REMARK 465 VAL A 192 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 GLN B 196 REMARK 465 SER B 197 REMARK 465 LYS B 198 REMARK 465 VAL B 199 REMARK 465 ALA C 182 REMARK 465 PRO C 183 REMARK 465 SER C 184 REMARK 465 PRO C 185 REMARK 465 LEU C 186 REMARK 465 PRO C 187 REMARK 465 GLU C 188 REMARK 465 THR C 189 REMARK 465 THR C 190 REMARK 465 GLU C 191 REMARK 465 VAL C 192 REMARK 465 SER D 194 REMARK 465 ALA D 195 REMARK 465 GLN D 196 REMARK 465 SER D 197 REMARK 465 LYS D 198 REMARK 465 VAL D 199 REMARK 465 ALA G 1 REMARK 465 PHE G 2 REMARK 465 ALA G 3 REMARK 465 PRO G 4 REMARK 465 ASN G 20 REMARK 465 ASN H 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 436 O HOH A 466 2.16 REMARK 500 O HOH B 396 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 33 -102.13 55.58 REMARK 500 THR B 90 -72.00 -122.41 REMARK 500 GLN B 110 0.51 84.51 REMARK 500 HIS D 33 -116.65 65.74 REMARK 500 THR D 90 -70.12 -123.29 REMARK 500 ALA G 18 -152.54 -101.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 498 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 482 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 483 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH C 404 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH D 403 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D 404 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH D 405 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH D 406 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH D 407 DISTANCE = 10.31 ANGSTROMS DBREF 7YXB A 1 191 UNP P01903 DRA_HUMAN 26 216 DBREF1 7YXB B 2 198 UNP A0A1V1IGJ9_HUMAN DBREF2 7YXB B A0A1V1IGJ9 31 227 DBREF 7YXB C 1 191 UNP P01903 DRA_HUMAN 26 216 DBREF1 7YXB D 2 198 UNP A0A1V1IGJ9_HUMAN DBREF2 7YXB D A0A1V1IGJ9 31 227 DBREF 7YXB G 1 20 PDB 7YXB 7YXB 1 20 DBREF 7YXB H 1 20 PDB 7YXB 7YXB 1 20 SEQADV 7YXB VAL A 192 UNP P01903 EXPRESSION TAG SEQADV 7YXB VAL B 199 UNP A0A1V1IGJ EXPRESSION TAG SEQADV 7YXB VAL C 192 UNP P01903 EXPRESSION TAG SEQADV 7YXB VAL D 199 UNP A0A1V1IGJ EXPRESSION TAG SEQRES 1 A 192 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 192 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 192 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 A 192 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 A 192 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 192 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 A 192 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 A 192 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 A 192 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 A 192 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 A 192 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 A 192 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 A 192 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 A 192 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 15 A 192 PRO SER PRO LEU PRO GLU THR THR GLU VAL SEQRES 1 B 198 ASP THR ARG PRO ARG PHE LEU GLU GLN VAL LYS HIS GLU SEQRES 2 B 198 CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG PHE LEU SEQRES 3 B 198 ASP ARG TYR PHE TYR HIS GLN GLU GLU TYR VAL ARG PHE SEQRES 4 B 198 ASP SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU SEQRES 5 B 198 GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS ASP SEQRES 6 B 198 LEU LEU GLU GLN LYS ARG ALA ALA VAL ASP THR TYR CYS SEQRES 7 B 198 ARG HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL GLN SEQRES 8 B 198 ARG ARG VAL TYR PRO GLU VAL THR VAL TYR PRO ALA LYS SEQRES 9 B 198 THR GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SER SEQRES 10 B 198 VAL ASN GLY PHE TYR PRO GLY SER ILE GLU VAL ARG TRP SEQRES 11 B 198 PHE ARG ASN GLY GLN GLU GLU LYS THR GLY VAL VAL SER SEQRES 12 B 198 THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN THR SEQRES 13 B 198 LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU VAL SEQRES 14 B 198 TYR THR CYS GLN VAL GLU HIS PRO SER LEU THR SER PRO SEQRES 15 B 198 LEU THR VAL GLU TRP ARG ALA ARG SER GLU SER ALA GLN SEQRES 16 B 198 SER LYS VAL SEQRES 1 C 192 ILE LYS GLU GLU HIS VAL ILE ILE GLN ALA GLU PHE TYR SEQRES 2 C 192 LEU ASN PRO ASP GLN SER GLY GLU PHE MET PHE ASP PHE SEQRES 3 C 192 ASP GLY ASP GLU ILE PHE HIS VAL ASP MET ALA LYS LYS SEQRES 4 C 192 GLU THR VAL TRP ARG LEU GLU GLU PHE GLY ARG PHE ALA SEQRES 5 C 192 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 C 192 ASP LYS ALA ASN LEU GLU ILE MET THR LYS ARG SER ASN SEQRES 7 C 192 TYR THR PRO ILE THR ASN VAL PRO PRO GLU VAL THR VAL SEQRES 8 C 192 LEU THR ASN SER PRO VAL GLU LEU ARG GLU PRO ASN VAL SEQRES 9 C 192 LEU ILE CYS PHE ILE ASP LYS PHE THR PRO PRO VAL VAL SEQRES 10 C 192 ASN VAL THR TRP LEU ARG ASN GLY LYS PRO VAL THR THR SEQRES 11 C 192 GLY VAL SER GLU THR VAL PHE LEU PRO ARG GLU ASP HIS SEQRES 12 C 192 LEU PHE ARG LYS PHE HIS TYR LEU PRO PHE LEU PRO SER SEQRES 13 C 192 THR GLU ASP VAL TYR ASP CYS ARG VAL GLU HIS TRP GLY SEQRES 14 C 192 LEU ASP GLU PRO LEU LEU LYS HIS TRP GLU PHE ASP ALA SEQRES 15 C 192 PRO SER PRO LEU PRO GLU THR THR GLU VAL SEQRES 1 D 198 ASP THR ARG PRO ARG PHE LEU GLU GLN VAL LYS HIS GLU SEQRES 2 D 198 CYS HIS PHE PHE ASN GLY THR GLU ARG VAL ARG PHE LEU SEQRES 3 D 198 ASP ARG TYR PHE TYR HIS GLN GLU GLU TYR VAL ARG PHE SEQRES 4 D 198 ASP SER ASP VAL GLY GLU TYR ARG ALA VAL THR GLU LEU SEQRES 5 D 198 GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN LYS ASP SEQRES 6 D 198 LEU LEU GLU GLN LYS ARG ALA ALA VAL ASP THR TYR CYS SEQRES 7 D 198 ARG HIS ASN TYR GLY VAL GLY GLU SER PHE THR VAL GLN SEQRES 8 D 198 ARG ARG VAL TYR PRO GLU VAL THR VAL TYR PRO ALA LYS SEQRES 9 D 198 THR GLN PRO LEU GLN HIS HIS ASN LEU LEU VAL CYS SER SEQRES 10 D 198 VAL ASN GLY PHE TYR PRO GLY SER ILE GLU VAL ARG TRP SEQRES 11 D 198 PHE ARG ASN GLY GLN GLU GLU LYS THR GLY VAL VAL SER SEQRES 12 D 198 THR GLY LEU ILE GLN ASN GLY ASP TRP THR PHE GLN THR SEQRES 13 D 198 LEU VAL MET LEU GLU THR VAL PRO ARG SER GLY GLU VAL SEQRES 14 D 198 TYR THR CYS GLN VAL GLU HIS PRO SER LEU THR SER PRO SEQRES 15 D 198 LEU THR VAL GLU TRP ARG ALA ARG SER GLU SER ALA GLN SEQRES 16 D 198 SER LYS VAL SEQRES 1 G 20 ALA PHE ALA PRO VAL SER LYS MET ARG MET ALA THR PRO SEQRES 2 G 20 LEU LEU MET GLN ALA GLY ASN SEQRES 1 H 20 ALA PHE ALA PRO VAL SER LYS MET ARG MET ALA THR PRO SEQRES 2 H 20 LEU LEU MET GLN ALA GLY ASN HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HET EDO B 204 4 HET EDO C 201 4 HET EDO C 202 4 HET FLC C 203 13 HET EDO D 201 4 HET EDO D 202 4 HET EDO D 203 4 HET EDO D 204 4 HET FLC G 101 13 HET EDO H 101 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM FLC CITRATE ANION HETSYN EDO ETHYLENE GLYCOL FORMUL 7 EDO 16(C2 H6 O2) FORMUL 18 FLC 2(C6 H5 O7 3-) FORMUL 25 HOH *610(H2 O) HELIX 1 AA1 LEU A 45 ARG A 50 5 6 HELIX 2 AA2 GLU A 55 SER A 77 1 23 HELIX 3 AA3 THR B 51 LEU B 53 5 3 HELIX 4 AA4 GLY B 54 SER B 63 1 10 HELIX 5 AA5 GLN B 64 ALA B 73 1 10 HELIX 6 AA6 ALA B 73 TYR B 78 1 6 HELIX 7 AA7 TYR B 78 GLU B 87 1 10 HELIX 8 AA8 SER B 88 THR B 90 5 3 HELIX 9 AA9 GLU C 47 ALA C 52 1 6 HELIX 10 AB1 GLU C 55 SER C 77 1 23 HELIX 11 AB2 THR D 51 LEU D 53 5 3 HELIX 12 AB3 GLY D 54 ASN D 62 1 9 HELIX 13 AB4 GLN D 64 ARG D 72 1 9 HELIX 14 AB5 ALA D 73 TYR D 78 1 6 HELIX 15 AB6 TYR D 78 GLU D 87 1 10 HELIX 16 AB7 SER D 88 THR D 90 5 3 SHEET 1 AA1 8 GLU A 40 TRP A 43 0 SHEET 2 AA1 8 ASP A 29 ASP A 35 -1 N ASP A 35 O GLU A 40 SHEET 3 AA1 8 SER A 19 PHE A 26 -1 N PHE A 26 O ASP A 29 SHEET 4 AA1 8 HIS A 5 ASN A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 AA1 8 PHE B 7 PHE B 18 -1 O PHE B 17 N HIS A 5 SHEET 6 AA1 8 ARG B 23 TYR B 32 -1 O LEU B 27 N GLU B 14 SHEET 7 AA1 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 AA1 8 TYR B 47 ALA B 49 -1 O ARG B 48 N ARG B 39 SHEET 1 AA2 2 ALA A 52 SER A 53 0 SHEET 2 AA2 2 SER G 6 LYS G 7 1 O SER G 6 N SER A 53 SHEET 1 AA3 4 GLU A 88 THR A 93 0 SHEET 2 AA3 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 AA3 4 PHE A 145 PHE A 153 -1 O HIS A 149 N CYS A 107 SHEET 4 AA3 4 SER A 133 GLU A 134 -1 N SER A 133 O TYR A 150 SHEET 1 AA4 4 GLU A 88 THR A 93 0 SHEET 2 AA4 4 ASN A 103 PHE A 112 -1 O ILE A 106 N LEU A 92 SHEET 3 AA4 4 PHE A 145 PHE A 153 -1 O HIS A 149 N CYS A 107 SHEET 4 AA4 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 AA5 4 LYS A 126 VAL A 128 0 SHEET 2 AA5 4 ASN A 118 ARG A 123 -1 N ARG A 123 O LYS A 126 SHEET 3 AA5 4 TYR A 161 GLU A 166 -1 O ARG A 164 N THR A 120 SHEET 4 AA5 4 LEU A 174 TRP A 178 -1 O TRP A 178 N TYR A 161 SHEET 1 AA6 4 GLU B 98 PRO B 103 0 SHEET 2 AA6 4 ASN B 113 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 AA6 4 PHE B 155 THR B 163 -1 O THR B 157 N VAL B 119 SHEET 4 AA6 4 VAL B 142 SER B 144 -1 N VAL B 143 O MET B 160 SHEET 1 AA7 4 GLU B 98 PRO B 103 0 SHEET 2 AA7 4 ASN B 113 PHE B 122 -1 O SER B 118 N THR B 100 SHEET 3 AA7 4 PHE B 155 THR B 163 -1 O THR B 157 N VAL B 119 SHEET 4 AA7 4 ILE B 148 GLN B 149 -1 N ILE B 148 O GLN B 156 SHEET 1 AA8 4 GLN B 136 GLU B 137 0 SHEET 2 AA8 4 GLU B 128 ARG B 133 -1 N ARG B 133 O GLN B 136 SHEET 3 AA8 4 VAL B 170 GLU B 176 -1 O GLN B 174 N ARG B 130 SHEET 4 AA8 4 LEU B 184 ARG B 189 -1 O LEU B 184 N VAL B 175 SHEET 1 AA9 8 GLU C 40 TRP C 43 0 SHEET 2 AA9 8 ASP C 29 ASP C 35 -1 N HIS C 33 O VAL C 42 SHEET 3 AA9 8 SER C 19 PHE C 26 -1 N PHE C 26 O ASP C 29 SHEET 4 AA9 8 HIS C 5 ASN C 15 -1 N ILE C 8 O ASP C 25 SHEET 5 AA9 8 PHE D 7 PHE D 18 -1 O PHE D 7 N ASN C 15 SHEET 6 AA9 8 ARG D 23 TYR D 32 -1 O PHE D 31 N GLN D 10 SHEET 7 AA9 8 GLU D 35 ASP D 41 -1 O GLU D 35 N TYR D 32 SHEET 8 AA9 8 TYR D 47 ALA D 49 -1 O ARG D 48 N ARG D 39 SHEET 1 AB1 4 GLU C 88 THR C 93 0 SHEET 2 AB1 4 ASN C 103 PHE C 112 -1 O PHE C 108 N THR C 90 SHEET 3 AB1 4 PHE C 145 PHE C 153 -1 O LEU C 151 N LEU C 105 SHEET 4 AB1 4 SER C 133 GLU C 134 -1 N SER C 133 O TYR C 150 SHEET 1 AB2 4 GLU C 88 THR C 93 0 SHEET 2 AB2 4 ASN C 103 PHE C 112 -1 O PHE C 108 N THR C 90 SHEET 3 AB2 4 PHE C 145 PHE C 153 -1 O LEU C 151 N LEU C 105 SHEET 4 AB2 4 LEU C 138 PRO C 139 -1 N LEU C 138 O ARG C 146 SHEET 1 AB3 4 LYS C 126 VAL C 128 0 SHEET 2 AB3 4 ASN C 118 ARG C 123 -1 N ARG C 123 O LYS C 126 SHEET 3 AB3 4 VAL C 160 GLU C 166 -1 O ARG C 164 N THR C 120 SHEET 4 AB3 4 LEU C 174 GLU C 179 -1 O LEU C 174 N VAL C 165 SHEET 1 AB4 4 GLU D 98 PRO D 103 0 SHEET 2 AB4 4 ASN D 113 PHE D 122 -1 O SER D 118 N THR D 100 SHEET 3 AB4 4 PHE D 155 THR D 163 -1 O THR D 157 N VAL D 119 SHEET 4 AB4 4 VAL D 142 SER D 144 -1 N VAL D 143 O MET D 160 SHEET 1 AB5 4 GLU D 98 PRO D 103 0 SHEET 2 AB5 4 ASN D 113 PHE D 122 -1 O SER D 118 N THR D 100 SHEET 3 AB5 4 PHE D 155 THR D 163 -1 O THR D 157 N VAL D 119 SHEET 4 AB5 4 ILE D 148 GLN D 149 -1 N ILE D 148 O GLN D 156 SHEET 1 AB6 4 GLN D 136 GLU D 138 0 SHEET 2 AB6 4 GLU D 128 ARG D 133 -1 N TRP D 131 O GLU D 138 SHEET 3 AB6 4 VAL D 170 GLU D 176 -1 O GLN D 174 N ARG D 130 SHEET 4 AB6 4 LEU D 184 ARG D 189 -1 O LEU D 184 N VAL D 175 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.05 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.09 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 SSBOND 4 CYS C 107 CYS C 163 1555 1555 2.03 SSBOND 5 CYS D 15 CYS D 79 1555 1555 2.05 SSBOND 6 CYS D 117 CYS D 173 1555 1555 2.02 CISPEP 1 ASN A 15 PRO A 16 0 3.03 CISPEP 2 THR A 113 PRO A 114 0 1.90 CISPEP 3 TYR B 123 PRO B 124 0 4.60 CISPEP 4 ASN C 15 PRO C 16 0 2.19 CISPEP 5 THR C 113 PRO C 114 0 0.01 CISPEP 6 TYR D 123 PRO D 124 0 1.66 CRYST1 96.891 111.485 212.540 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004705 0.00000