HEADER RNA BINDING PROTEIN 15-FEB-22 7YXE
TITLE CRYSTAL STRUCTURE OF YTHDF2 WITH COMPOUND ZA_143
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING FAMILY PROTEIN 2;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: CLL-ASSOCIATED ANTIGEN KW-14,HIGH-GLUCOSE-REGULATED PROTEIN
COMPND 5 8,RENAL CARCINOMA ANTIGEN NY-REN-2;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: YTHDF2, HGRG8;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS EPITRANSCRIPTOMIC READER, M6A READER, RNA BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR F.NAI,F.ZALESAK,Y.LI,A.CAFLISCH
REVDAT 4 31-JAN-24 7YXE 1 REMARK
REVDAT 3 28-SEP-22 7YXE 1 JRNL
REVDAT 2 06-JUL-22 7YXE 1 REMARK
REVDAT 1 02-MAR-22 7YXE 0
JRNL AUTH F.NAI,R.NACHAWATI,F.ZALESAK,X.WANG,Y.LI,A.CAFLISCH
JRNL TITL FRAGMENT LIGANDS OF THE M 6 A-RNA READER YTHDF2.
JRNL REF ACS MED.CHEM.LETT. V. 13 1500 2022
JRNL REFN ISSN 1948-5875
JRNL PMID 36110386
JRNL DOI 10.1021/ACSMEDCHEMLETT.2C00303
REMARK 2
REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.20_4459
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.06
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 35606
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.211
REMARK 3 R VALUE (WORKING SET) : 0.210
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1779
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 44.0600 - 4.3400 1.00 2648 140 0.1889 0.1898
REMARK 3 2 4.3400 - 3.4500 1.00 2611 135 0.1709 0.1705
REMARK 3 3 3.4400 - 3.0100 1.00 2619 137 0.2062 0.2272
REMARK 3 4 3.0100 - 2.7300 1.00 2604 138 0.2195 0.2661
REMARK 3 5 2.7300 - 2.5400 1.00 2605 137 0.2324 0.2818
REMARK 3 6 2.5400 - 2.3900 1.00 2605 137 0.2290 0.2643
REMARK 3 7 2.3900 - 2.2700 1.00 2597 137 0.2258 0.2536
REMARK 3 8 2.2700 - 2.1700 1.00 2580 136 0.2356 0.2775
REMARK 3 9 2.1700 - 2.0900 1.00 2610 137 0.2381 0.2720
REMARK 3 10 2.0900 - 2.0100 1.00 2593 137 0.2440 0.2903
REMARK 3 11 2.0100 - 1.9500 1.00 2584 136 0.2470 0.2752
REMARK 3 12 1.9500 - 1.9000 1.00 2592 136 0.2815 0.3652
REMARK 3 13 1.9000 - 1.8500 0.99 2579 136 0.2679 0.3304
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.663
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 27.98
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.54
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 2471
REMARK 3 ANGLE : 0.905 3347
REMARK 3 CHIRALITY : 0.064 343
REMARK 3 PLANARITY : 0.009 426
REMARK 3 DIHEDRAL : 6.639 328
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7YXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-22.
REMARK 100 THE DEPOSITION ID IS D_1292121127.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 01-DEC-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X06DA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35681
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850
REMARK 200 RESOLUTION RANGE LOW (A) : 44.060
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 10.18
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.1300
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4RDN
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.95
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2.05 M AMMONIUM SULFATE, 0.1 M SODIUM
REMARK 280 CITRATE TRIBASIC PH 5.1, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+1/6
REMARK 290 6555 X-Y,X,Z+5/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.02667
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.01333
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.02000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.00667
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 95.03333
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 386
REMARK 465 GLY A 387
REMARK 465 SER A 388
REMARK 465 SER A 389
REMARK 465 TYR A 390
REMARK 465 HIS A 391
REMARK 465 HIS A 392
REMARK 465 HIS A 393
REMARK 465 HIS A 394
REMARK 465 HIS A 395
REMARK 465 HIS A 396
REMARK 465 SER A 397
REMARK 465 SER A 398
REMARK 465 GLY A 399
REMARK 465 HIS A 406
REMARK 465 HIS A 549
REMARK 465 THR A 550
REMARK 465 THR A 551
REMARK 465 SER A 552
REMARK 465 MET B 386
REMARK 465 GLY B 387
REMARK 465 SER B 388
REMARK 465 SER B 389
REMARK 465 TYR B 390
REMARK 465 HIS B 391
REMARK 465 HIS B 392
REMARK 465 HIS B 393
REMARK 465 HIS B 394
REMARK 465 HIS B 395
REMARK 465 HIS B 396
REMARK 465 SER B 397
REMARK 465 SER B 398
REMARK 465 GLY B 399
REMARK 465 GLU B 400
REMARK 465 HIS B 549
REMARK 465 THR B 550
REMARK 465 THR B 551
REMARK 465 SER B 552
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LEU A 402 CG CD1 CD2
REMARK 470 GLN A 405 CG CD OE1 NE2
REMARK 470 MET A 407 CG SD CE
REMARK 470 LYS A 408 CG CD CE NZ
REMARK 470 LYS A 440 CE NZ
REMARK 470 ASN A 450 CG OD1 ND2
REMARK 470 LYS A 452 CG CD CE NZ
REMARK 470 ASP A 489 OD2
REMARK 470 LYS A 490 CG CD CE NZ
REMARK 470 LYS A 492 CG CD CE NZ
REMARK 470 ARG A 498 CD NE CZ NH1 NH2
REMARK 470 ILE A 500 CG2
REMARK 470 PHE A 501 CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A 527 NE CZ NH1 NH2
REMARK 470 LYS A 548 CG CD CE NZ
REMARK 470 ASN B 401 CG OD1 ND2
REMARK 470 LEU B 402 CG CD1 CD2
REMARK 470 GLN B 405 CG CD OE1 NE2
REMARK 470 LYS B 408 CG CD CE NZ
REMARK 470 ARG B 447 NH1
REMARK 470 LYS B 452 CG CD CE NZ
REMARK 470 LYS B 474 NZ
REMARK 470 ARG B 498 NE CZ NH1 NH2
REMARK 470 ARG B 511 NE CZ NH1 NH2
REMARK 470 ARG B 527 NE CZ NH1 NH2
REMARK 470 LYS B 538 CD CE NZ
REMARK 470 LYS B 542 CE NZ
REMARK 470 LYS B 548 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 747 O HOH A 766 1.96
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 434 -167.64 -113.51
REMARK 500 ASP A 489 36.77 -83.27
REMARK 500 MET B 407 38.90 -140.74
REMARK 500 HIS B 409 -177.68 59.87
REMARK 500 SER B 434 -164.42 -114.42
REMARK 500
REMARK 500 REMARK: NULL
DBREF 7YXE A 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552
DBREF 7YXE B 408 552 UNP Q9Y5A9 YTHD2_HUMAN 408 552
SEQADV 7YXE MET A 386 UNP Q9Y5A9 INITIATING METHIONINE
SEQADV 7YXE GLY A 387 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER A 388 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER A 389 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE TYR A 390 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 391 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 392 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 393 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 394 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 395 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 396 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER A 397 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER A 398 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE GLY A 399 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE GLU A 400 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE ASN A 401 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE LEU A 402 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE TYR A 403 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE PHE A 404 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE GLN A 405 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS A 406 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE MET A 407 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE MET B 386 UNP Q9Y5A9 INITIATING METHIONINE
SEQADV 7YXE GLY B 387 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER B 388 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER B 389 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE TYR B 390 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 391 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 392 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 393 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 394 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 395 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 396 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER B 397 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE SER B 398 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE GLY B 399 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE GLU B 400 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE ASN B 401 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE LEU B 402 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE TYR B 403 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE PHE B 404 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE GLN B 405 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE HIS B 406 UNP Q9Y5A9 EXPRESSION TAG
SEQADV 7YXE MET B 407 UNP Q9Y5A9 EXPRESSION TAG
SEQRES 1 A 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER
SEQRES 2 A 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG
SEQRES 3 A 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS
SEQRES 4 A 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS
SEQRES 5 A 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN
SEQRES 6 A 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY
SEQRES 7 A 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA
SEQRES 8 A 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP
SEQRES 9 A 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL
SEQRES 10 A 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU
SEQRES 11 A 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP
SEQRES 12 A 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU
SEQRES 13 A 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER
SEQRES 1 B 167 MET GLY SER SER TYR HIS HIS HIS HIS HIS HIS SER SER
SEQRES 2 B 167 GLY GLU ASN LEU TYR PHE GLN HIS MET LYS HIS GLY ARG
SEQRES 3 B 167 VAL PHE ILE ILE LYS SER TYR SER GLU ASP ASP ILE HIS
SEQRES 4 B 167 ARG SER ILE LYS TYR ASN ILE TRP CYS SER THR GLU HIS
SEQRES 5 B 167 GLY ASN LYS ARG LEU ASP ALA ALA TYR ARG SER MET ASN
SEQRES 6 B 167 GLY LYS GLY PRO VAL TYR LEU LEU PHE SER VAL ASN GLY
SEQRES 7 B 167 SER GLY HIS PHE CYS GLY VAL ALA GLU MET LYS SER ALA
SEQRES 8 B 167 VAL ASP TYR ASN THR CYS ALA GLY VAL TRP SER GLN ASP
SEQRES 9 B 167 LYS TRP LYS GLY ARG PHE ASP VAL ARG TRP ILE PHE VAL
SEQRES 10 B 167 LYS ASP VAL PRO ASN SER GLN LEU ARG HIS ILE ARG LEU
SEQRES 11 B 167 GLU ASN ASN GLU ASN LYS PRO VAL THR ASN SER ARG ASP
SEQRES 12 B 167 THR GLN GLU VAL PRO LEU GLU LYS ALA LYS GLN VAL LEU
SEQRES 13 B 167 LYS ILE ILE ALA SER TYR LYS HIS THR THR SER
HET I82 A 601 17
HET SO4 A 602 5
HET SO4 A 603 5
HET I82 B 601 17
HET GOL B 602 6
HET SO4 B 603 5
HET SO4 B 604 5
HET NA B 605 1
HETNAM I82 ~{N}-METHYL-3-PHENYL-2~{H}-PYRAZOLO[4,3-D]PYRIMIDIN-7-
HETNAM 2 I82 AMINE
HETNAM SO4 SULFATE ION
HETNAM GOL GLYCEROL
HETNAM NA SODIUM ION
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 3 I82 2(C12 H11 N5)
FORMUL 4 SO4 4(O4 S 2-)
FORMUL 7 GOL C3 H8 O3
FORMUL 10 NA NA 1+
FORMUL 11 HOH *147(H2 O)
HELIX 1 AA1 SER A 419 ASN A 430 1 12
HELIX 2 AA2 THR A 435 ASN A 450 1 16
HELIX 3 AA3 SER A 508 LEU A 510 5 3
HELIX 4 AA4 PRO A 522 SER A 526 5 5
HELIX 5 AA5 PRO A 533 TYR A 547 1 15
HELIX 6 AA6 SER B 419 ASN B 430 1 12
HELIX 7 AA7 THR B 435 ASN B 450 1 16
HELIX 8 AA8 SER B 508 LEU B 510 5 3
HELIX 9 AA9 PRO B 522 SER B 526 5 5
HELIX 10 AB1 PRO B 533 TYR B 547 1 15
SHEET 1 AA1 6 ILE A 431 TRP A 432 0
SHEET 2 AA1 6 PHE A 495 PRO A 506 -1 O PHE A 495 N TRP A 432
SHEET 3 AA1 6 HIS A 466 MET A 473 -1 N VAL A 470 O ILE A 500
SHEET 4 AA1 6 VAL A 455 VAL A 461 -1 N LEU A 457 O ALA A 471
SHEET 5 AA1 6 ARG A 411 SER A 417 1 N ILE A 415 O LEU A 458
SHEET 6 AA1 6 GLU A 531 VAL A 532 -1 O VAL A 532 N VAL A 412
SHEET 1 AA2 6 ILE B 431 TRP B 432 0
SHEET 2 AA2 6 PHE B 495 PRO B 506 -1 O PHE B 495 N TRP B 432
SHEET 3 AA2 6 HIS B 466 MET B 473 -1 N VAL B 470 O ILE B 500
SHEET 4 AA2 6 VAL B 455 VAL B 461 -1 N LEU B 457 O ALA B 471
SHEET 5 AA2 6 ARG B 411 SER B 417 1 N ILE B 415 O LEU B 458
SHEET 6 AA2 6 GLU B 531 VAL B 532 -1 O VAL B 532 N VAL B 412
LINK NA NA B 605 O HOH B 723 1555 1555 3.15
CRYST1 80.160 80.160 114.040 90.00 90.00 120.00 P 65 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012475 0.007202 0.000000 0.00000
SCALE2 0.000000 0.014405 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008769 0.00000