HEADER NUCLEAR PROTEIN 16-FEB-22 7YXP TITLE CRYSTAL STRUCTURE OF WT ANCGR2-LBD WT BOUND TO DEXAMETHASONE AND SHP TITLE 2 COREGULATOR FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCESTRAL GLUCOCORTICOID RECEPTOR2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SHP NR BOX 1 PEPTIDE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, DEXAMETHASONE, NUCLEAR KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.JIMENEZ-PANIZO,E.ESTEBANEZ-PERPINA,P.FUENTES-PRIOR REVDAT 4 31-JAN-24 7YXP 1 REMARK REVDAT 3 18-JAN-23 7YXP 1 JRNL REVDAT 2 14-DEC-22 7YXP 1 JRNL REVDAT 1 07-DEC-22 7YXP 0 JRNL AUTH A.JIMENEZ-PANIZO,A.ALEGRE-MARTI,T.T.TETTEY,G.FETTWEIS, JRNL AUTH 2 M.ABELLA,R.ANTON,T.A.JOHNSON,S.KIM,R.L.SCHILTZ, JRNL AUTH 3 I.NUNEZ-BARRIOS,J.FONT-DIAZ,C.CAELLES,A.F.VALLEDOR,P.PEREZ, JRNL AUTH 4 A.M.ROJAS,J.FERNANDEZ-RECIO,D.M.PRESMAN,G.L.HAGER, JRNL AUTH 5 P.FUENTES-PRIOR,E.ESTEBANEZ-PERPINA JRNL TITL THE MULTIVALENCY OF THE GLUCOCORTICOID RECEPTOR JRNL TITL 2 LIGAND-BINDING DOMAIN EXPLAINS ITS MANIFOLD PHYSIOLOGICAL JRNL TITL 3 ACTIVITIES. JRNL REF NUCLEIC ACIDS RES. V. 50 13063 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 36464162 JRNL DOI 10.1093/NAR/GKAC1119 REMARK 2 REMARK 2 RESOLUTION. 3.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.45 REMARK 3 REFLECTION IN BIN (WORKING SET) : 488 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE SET COUNT : 23 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2047 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 141.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 141.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.548 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.439 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2158 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2932 ; 1.727 ; 1.621 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 8.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;35.765 ;22.653 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;22.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.153 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1543 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7YXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7178 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.360 REMARK 200 RESOLUTION RANGE LOW (A) : 72.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5UFS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.0, 0.2 M SODIUM REMARK 280 CHLORIDE, 2.0 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.03000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.03000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 89.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 89.03000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 89.03000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 89.03000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 89.03000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 89.03000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 89.03000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 89.03000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 89.03000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 133.54500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.51500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 133.54500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 133.54500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.51500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 133.54500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.51500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 44.51500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 44.51500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 44.51500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 133.54500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 44.51500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 133.54500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 133.54500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 44.51500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 133.54500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 133.54500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 44.51500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 44.51500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 44.51500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 44.51500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 133.54500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 133.54500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 133.54500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 89.03000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 89.03000 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 89.03000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 89.03000 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 89.03000 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 89.03000 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 89.03000 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 89.03000 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 89.03000 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 89.03000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 89.03000 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 89.03000 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 89.03000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 44.51500 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 133.54500 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 44.51500 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 44.51500 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 133.54500 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 44.51500 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 133.54500 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 133.54500 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 133.54500 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 133.54500 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 44.51500 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 133.54500 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 44.51500 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 44.51500 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 133.54500 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 44.51500 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 44.51500 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 133.54500 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 133.54500 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 133.54500 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 44.51500 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 133.54500 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 44.51500 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 133.54500 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 44.51500 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 44.51500 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 44.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 552 REMARK 465 PRO A 553 REMARK 465 ARG A 704 REMARK 465 GLU A 705 REMARK 465 GLY A 706 REMARK 465 ASN A 707 REMARK 465 GLN A 776 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 576 O2 TRS A 1003 37544 1.93 REMARK 500 OG SER A 744 O PHE A 764 9555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 537 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 550 36.89 -87.33 REMARK 500 LEU A 589 -43.54 -27.65 REMARK 500 SER A 616 17.13 -141.47 REMARK 500 PRO A 637 -89.58 -21.72 REMARK 500 ASP A 641 -68.62 -24.21 REMARK 500 GLN A 657 77.90 43.95 REMARK 500 LEU A 672 43.23 -104.07 REMARK 500 SER A 682 67.46 -163.00 REMARK 500 LYS A 699 -52.24 -22.48 REMARK 500 GLN A 713 -50.59 178.74 REMARK 500 MET A 725 -77.41 -60.85 REMARK 500 HIS A 726 -44.57 -17.94 REMARK 500 GLN A 734 -70.04 -65.06 REMARK 500 PHE A 735 -64.45 -26.22 REMARK 500 SER A 744 25.00 -79.45 REMARK 500 GLU A 751 -65.86 -12.72 REMARK 500 LEU A 761 -72.11 -50.67 REMARK 500 SER A 768 55.61 -94.14 REMARK 500 LEU A 773 -158.19 -113.15 REMARK 500 SER B 27 -131.21 71.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 679 LEU A 680 -141.65 REMARK 500 ASN A 711 TRP A 712 138.42 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7YXP A 530 776 UNP A0A1X8XLE9_9ZZZZ DBREF2 7YXP A A0A1X8XLE9 2 248 DBREF 7YXP B 16 28 PDB 7YXP 7YXP 16 28 SEQADV 7YXP PHE A 529 UNP A0A1X8XLE EXPRESSION TAG SEQRES 1 A 248 PHE PRO THR LEU ILE SER LEU LEU GLU VAL ILE GLU PRO SEQRES 2 A 248 GLU VAL LEU TYR SER GLY TYR ASP SER THR LEU PRO ASP SEQRES 3 A 248 THR SER THR ARG LEU MET SER THR LEU ASN ARG LEU GLY SEQRES 4 A 248 GLY ARG GLN VAL VAL SER ALA VAL LYS TRP ALA LYS ALA SEQRES 5 A 248 LEU PRO GLY PHE ARG ASN LEU HIS LEU ASP ASP GLN MET SEQRES 6 A 248 THR LEU LEU GLN TYR SER TRP MET SER LEU MET ALA PHE SEQRES 7 A 248 SER LEU GLY TRP ARG SER TYR LYS GLN SER ASN GLY ASN SEQRES 8 A 248 MET LEU CYS PHE ALA PRO ASP LEU VAL ILE ASN GLU GLU SEQRES 9 A 248 ARG MET GLN LEU PRO TYR MET TYR ASP GLN CYS GLN GLN SEQRES 10 A 248 MET LEU LYS ILE SER SER GLU PHE VAL ARG LEU GLN VAL SEQRES 11 A 248 SER TYR ASP GLU TYR LEU CYS MET LYS VAL LEU LEU LEU SEQRES 12 A 248 LEU SER THR VAL PRO LYS ASP GLY LEU LYS SER GLN ALA SEQRES 13 A 248 VAL PHE ASP GLU ILE ARG MET THR TYR ILE LYS GLU LEU SEQRES 14 A 248 GLY LYS ALA ILE VAL LYS ARG GLU GLY ASN SER SER GLN SEQRES 15 A 248 ASN TRP GLN ARG PHE TYR GLN LEU THR LYS LEU LEU ASP SEQRES 16 A 248 SER MET HIS GLU MET VAL GLY GLY LEU LEU GLN PHE CYS SEQRES 17 A 248 PHE TYR THR PHE VAL ASN LYS SER LEU SER VAL GLU PHE SEQRES 18 A 248 PRO GLU MET LEU ALA GLU ILE ILE SER ASN GLN LEU PRO SEQRES 19 A 248 LYS PHE LYS ALA GLY SER VAL LYS PRO LEU LEU PHE HIS SEQRES 20 A 248 GLN SEQRES 1 B 13 SER ARG PRO ALA ILE LEU TYR ALA LEU LEU SER SER SER HET DEX A1001 28 HET DEX A1002 28 HET TRS A1003 8 HETNAM DEX DEXAMETHASONE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN DEX 9A-FLUORO-16BETA-METHYLPREDNISOLONE HETSYN TRS TRIS BUFFER FORMUL 3 DEX 2(C22 H29 F O5) FORMUL 5 TRS C4 H12 N O3 1+ HELIX 1 AA1 THR A 531 GLU A 540 1 10 HELIX 2 AA2 THR A 555 ALA A 580 1 26 HELIX 3 AA3 HIS A 588 ASN A 617 1 30 HELIX 4 AA4 ASN A 630 GLN A 635 1 6 HELIX 5 AA5 MET A 639 GLN A 657 1 19 HELIX 6 AA6 SER A 659 LEU A 672 1 14 HELIX 7 AA7 SER A 682 LYS A 703 1 22 HELIX 8 AA8 GLN A 713 ASN A 742 1 30 HELIX 9 AA9 LYS A 743 SER A 746 5 4 HELIX 10 AB1 PRO A 750 ALA A 766 1 17 HELIX 11 AB2 PRO B 18 SER B 27 1 10 SHEET 1 AA1 2 LEU A 621 CYS A 622 0 SHEET 2 AA1 2 VAL A 628 ILE A 629 -1 O ILE A 629 N LEU A 621 SHEET 1 AA2 2 THR A 674 PRO A 676 0 SHEET 2 AA2 2 VAL A 769 PRO A 771 -1 O LYS A 770 N VAL A 675 CISPEP 1 PHE A 529 PRO A 530 0 -28.24 CRYST1 178.060 178.060 178.060 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005616 0.00000