HEADER CELL ADHESION 18-FEB-22 7YYK TITLE CRYSTAL STRUCTURE OF THE O-FUCOSYLATED FORM OF TSRS1-3 FROM THE HUMAN TITLE 2 THROMBOSPONDIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBOSPONDIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOPROTEIN G; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: THBS1, TSP, TSP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS O-FUCOSYLATION, POFUT2, THROMBOSPONDIN 1, TSRS, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR S.J.BERARDINELLI,A.ELETSKY,J.VALERO-GONZALEZ,A.ITO,R.MANJUNATH, AUTHOR 2 R.HURTADO-GUERRERO,J.R.PRESTEGARD,R.J.WOODS,R.S.HALTIWANGER REVDAT 4 31-JAN-24 7YYK 1 REMARK REVDAT 3 06-JUL-22 7YYK 1 JRNL REVDAT 2 01-JUN-22 7YYK 1 JRNL REVDAT 1 25-MAY-22 7YYK 0 JRNL AUTH S.J.BERARDINELLI,A.ELETSKY,J.VALERO-GONZALEZ,A.ITO, JRNL AUTH 2 R.MANJUNATH,R.HURTADO-GUERRERO,J.H.PRESTEGARD,R.J.WOODS, JRNL AUTH 3 R.S.HALTIWANGER JRNL TITL O-FUCOSYLATION STABILIZES THE TSR3 MOTIF IN THROMBOSPONDIN-1 JRNL TITL 2 BY INTERACTING WITH NEARBY AMINO ACIDS AND PROTECTING A JRNL TITL 3 DISULFIDE BOND. JRNL REF J.BIOL.CHEM. V. 298 02047 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35597280 JRNL DOI 10.1016/J.JBC.2022.102047 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 5466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 162 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 396 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -2.58000 REMARK 3 B33 (A**2) : 3.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.458 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.339 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.313 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.421 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 913 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 803 ; 0.005 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1243 ; 1.738 ; 1.684 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1873 ; 1.316 ; 1.626 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 115 ; 9.910 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;37.135 ;22.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 139 ;21.026 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.727 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 119 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1033 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 203 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 457 ; 3.224 ; 5.448 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 456 ; 3.227 ; 5.440 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 570 ; 5.285 ; 8.140 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 571 ; 5.280 ; 8.148 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 454 ; 2.901 ; 5.693 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 455 ; 2.898 ; 5.695 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 672 ; 4.579 ; 8.399 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1034 ; 7.507 ;64.475 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1035 ; 7.504 ;64.493 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 434 A 603 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3272 18.9855 14.3263 REMARK 3 T TENSOR REMARK 3 T11: 0.0508 T22: 0.0893 REMARK 3 T33: 0.4231 T12: 0.0671 REMARK 3 T13: -0.0333 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 3.0191 L22: 3.3582 REMARK 3 L33: 0.4406 L12: -3.1692 REMARK 3 L13: 0.8601 L23: -0.9685 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: -0.1455 S13: -0.1045 REMARK 3 S21: 0.0868 S22: 0.1244 S23: 0.1436 REMARK 3 S31: -0.0188 S32: -0.0327 S33: -0.0192 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7YYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.19700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.85900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1LSL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, ZINC ACETATE, BUFFER MES, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.06050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.06050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.07650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.59850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.07650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.59850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.06050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.07650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.59850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.06050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.07650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.59850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 378 REMARK 465 ASP A 379 REMARK 465 ASP A 380 REMARK 465 GLY A 381 REMARK 465 TRP A 382 REMARK 465 SER A 383 REMARK 465 PRO A 384 REMARK 465 TRP A 385 REMARK 465 SER A 386 REMARK 465 GLU A 387 REMARK 465 TRP A 388 REMARK 465 THR A 389 REMARK 465 SER A 390 REMARK 465 CYS A 391 REMARK 465 SER A 392 REMARK 465 THR A 393 REMARK 465 SER A 394 REMARK 465 CYS A 395 REMARK 465 GLY A 396 REMARK 465 ASN A 397 REMARK 465 GLY A 398 REMARK 465 ILE A 399 REMARK 465 GLN A 400 REMARK 465 GLN A 401 REMARK 465 ARG A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 SER A 405 REMARK 465 CYS A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 LEU A 409 REMARK 465 ASN A 410 REMARK 465 ASN A 411 REMARK 465 ARG A 412 REMARK 465 CYS A 413 REMARK 465 GLU A 414 REMARK 465 GLY A 415 REMARK 465 SER A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 GLN A 419 REMARK 465 THR A 420 REMARK 465 ARG A 421 REMARK 465 THR A 422 REMARK 465 CYS A 423 REMARK 465 HIS A 424 REMARK 465 ILE A 425 REMARK 465 GLN A 426 REMARK 465 GLU A 427 REMARK 465 CYS A 428 REMARK 465 ASP A 429 REMARK 465 LYS A 430 REMARK 465 ARG A 431 REMARK 465 PHE A 432 REMARK 465 LYS A 433 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 450 O5 FUC A 601 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 488 C ALA A 488 O 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 445 151.10 -48.24 REMARK 500 SER A 446 157.66 -38.11 REMARK 500 PRO A 467 95.98 -61.14 REMARK 500 ASN A 470 12.90 53.02 REMARK 500 PRO A 473 -174.61 -64.93 REMARK 500 PRO A 490 137.03 -37.85 REMARK 500 ASN A 520 22.20 -158.54 REMARK 500 GLN A 544 121.31 -22.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 7YYK A 378 547 UNP P07996 TSP1_HUMAN 378 547 SEQRES 1 A 170 ALA ASP ASP GLY TRP SER PRO TRP SER GLU TRP THR SER SEQRES 2 A 170 CYS SER THR SER CYS GLY ASN GLY ILE GLN GLN ARG GLY SEQRES 3 A 170 ARG SER CYS ASP SER LEU ASN ASN ARG CYS GLU GLY SER SEQRES 4 A 170 SER VAL GLN THR ARG THR CYS HIS ILE GLN GLU CYS ASP SEQRES 5 A 170 LYS ARG PHE LYS GLN ASP GLY GLY TRP SER HIS TRP SER SEQRES 6 A 170 PRO TRP SER SER CYS SER VAL THR CYS GLY ASP GLY VAL SEQRES 7 A 170 ILE THR ARG ILE ARG LEU CYS ASN SER PRO SER PRO GLN SEQRES 8 A 170 MET ASN GLY LYS PRO CYS GLU GLY GLU ALA ARG GLU THR SEQRES 9 A 170 LYS ALA CYS LYS LYS ASP ALA CYS PRO ILE ASN GLY GLY SEQRES 10 A 170 TRP GLY PRO TRP SER PRO TRP ASP ILE CYS SER VAL THR SEQRES 11 A 170 CYS GLY GLY GLY VAL GLN LYS ARG SER ARG LEU CYS ASN SEQRES 12 A 170 ASN PRO THR PRO GLN PHE GLY GLY LYS ASP CYS VAL GLY SEQRES 13 A 170 ASP VAL THR GLU ASN GLN ILE CYS ASN LYS GLN ASP CYS SEQRES 14 A 170 PRO HET FUC A 601 10 HET FUC A 602 10 HET EDO A 603 4 HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FUC 2(C6 H12 O5) FORMUL 4 EDO C2 H6 O2 FORMUL 5 HOH *21(H2 O) SHEET 1 AA1 2 GLY A 452 ILE A 459 0 SHEET 2 AA1 2 ARG A 479 LYS A 486 -1 O CYS A 484 N GLY A 454 SHEET 1 AA2 2 GLY A 511 SER A 516 0 SHEET 2 AA2 2 THR A 536 CYS A 541 -1 O CYS A 541 N GLY A 511 SSBOND 1 CYS A 447 CYS A 484 1555 1555 2.06 SSBOND 2 CYS A 451 CYS A 489 1555 1555 2.08 SSBOND 3 CYS A 462 CYS A 474 1555 1555 2.07 SSBOND 4 CYS A 504 CYS A 541 1555 1555 2.01 SSBOND 5 CYS A 508 CYS A 546 1555 1555 2.05 SSBOND 6 CYS A 519 CYS A 531 1555 1555 2.16 LINK OG1 THR A 450 C1 FUC A 601 1555 1555 1.42 LINK OG1 THR A 507 C1 FUC A 602 1555 1555 1.44 CISPEP 1 SER A 464 PRO A 465 0 9.75 CISPEP 2 ASN A 521 PRO A 522 0 7.39 CRYST1 66.153 85.197 62.121 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015116 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016098 0.00000