HEADER SIGNALING PROTEIN 19-FEB-22 7YZ9 TITLE STRUCTURE OF CATALYTIC DOMAIN OF RV1625C BOUND TO NANOBODY NB4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENYLATE CYCLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP PYROPHOSPHATE-LYASE,ADENYLYL CYCLASE; COMPND 5 EC: 4.6.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NANOBODY NB4; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: ATCC 25618 / H37RV; SOURCE 5 GENE: CYA, RV1625C, MTCY01B2.17C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 10 ORGANISM_TAXID: 30538; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE ADENYLYL CYCLASE, NANOBODY, COMPLEX, MYCOBACTERIUM KEYWDS 2 TUBERCULOSIS, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.KHANPPNAVAR,V.J.MEHTA,T.IYPE,V.M.KORKHOV REVDAT 2 31-JAN-24 7YZ9 1 REMARK REVDAT 1 31-AUG-22 7YZ9 0 JRNL AUTH V.MEHTA,B.KHANPPNAVAR,D.SCHUSTER,I.KANTARCI,I.VERCELLINO, JRNL AUTH 2 A.KOSTURANOVA,T.IYPE,S.STEFANIC,P.PICOTTI,V.M.KORKHOV JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS CYA, AN EVOLUTIONARY JRNL TITL 2 ANCESTOR OF THE MAMMALIAN MEMBRANE ADENYLYL CYCLASES. JRNL REF ELIFE V. 11 2022 JRNL REFN ESSN 2050-084X JRNL PMID 35980026 JRNL DOI 10.7554/ELIFE.77032 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 39840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.0700 - 4.7500 1.00 2881 146 0.1944 0.2600 REMARK 3 2 4.7500 - 3.7700 1.00 2885 147 0.1616 0.1863 REMARK 3 3 3.7700 - 3.3000 1.00 2871 147 0.1816 0.2020 REMARK 3 4 3.3000 - 3.0000 1.00 2861 157 0.2057 0.2325 REMARK 3 5 3.0000 - 2.7800 1.00 2865 152 0.2332 0.3014 REMARK 3 6 2.7800 - 2.6200 1.00 2902 147 0.2370 0.2608 REMARK 3 7 2.6200 - 2.4900 1.00 2864 151 0.2488 0.2593 REMARK 3 8 2.4900 - 2.3800 1.00 2872 153 0.2447 0.3068 REMARK 3 9 2.3800 - 2.2900 1.00 2882 151 0.2610 0.3140 REMARK 3 10 2.2900 - 2.2100 0.99 2819 150 0.2630 0.3065 REMARK 3 11 2.2100 - 2.1400 0.95 2745 145 0.2655 0.2635 REMARK 3 12 2.1400 - 2.0800 0.84 2402 125 0.2813 0.3773 REMARK 3 13 2.0800 - 2.0200 0.74 2147 112 0.2857 0.3260 REMARK 3 14 2.0200 - 1.9700 0.65 1866 95 0.3191 0.3506 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.272 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.664 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2431 REMARK 3 ANGLE : 1.164 3312 REMARK 3 CHIRALITY : 0.057 360 REMARK 3 PLANARITY : 0.005 430 REMARK 3 DIHEDRAL : 20.946 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999879 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 774280 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 47.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 35.90 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.9 REMARK 200 DATA REDUNDANCY IN SHELL : 22.80 REMARK 200 R MERGE FOR SHELL (I) : 1.58700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4P2F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA-ACETATE PH 5.5, 0.02 M CACL2, REMARK 280 30% MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.77000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.88500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.82750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.94250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.71250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.77000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 39.88500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.94250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 59.82750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 99.71250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 GLU A -4 REMARK 465 VAL A -3 REMARK 465 LEU A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 ARG A 7 REMARK 465 ASP A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 ARG A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 MET A 16 REMARK 465 GLU A 17 REMARK 465 ALA A 18 REMARK 465 GLU A 19 REMARK 465 HIS A 20 REMARK 465 ASP A 21 REMARK 465 ARG A 22 REMARK 465 SER A 23 REMARK 465 GLU A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 29 REMARK 465 MET A 30 REMARK 465 LEU A 31 REMARK 465 PRO A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 ILE A 35 REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 ARG A 38 REMARK 465 LEU A 39 REMARK 465 LYS A 40 REMARK 465 GLU A 41 REMARK 465 PRO A 42 REMARK 465 GLU A 43 REMARK 465 ARG A 44 REMARK 465 ASN A 45 REMARK 465 HIS A 211 REMARK 465 ILE A 212 REMARK 465 ASN A 213 REMARK 465 VAL A 214 REMARK 465 LYS A 215 REMARK 465 GLY A 216 REMARK 465 LYS A 217 REMARK 465 GLY A 218 REMARK 465 ASP A 233 REMARK 465 MET B 4 REMARK 465 ALA B 5 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 GLU B 128 REMARK 465 PRO B 129 REMARK 465 GLU B 130 REMARK 465 ALA B 131 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 141 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 169 NH1 ARG A 180 12555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 118 33.23 -98.74 REMARK 500 ALA B 46 -37.14 145.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 522 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH A 523 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH B 231 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH B 232 DISTANCE = 7.77 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD1 REMARK 620 2 ILE A 61 O 99.9 REMARK 620 3 ONM A 306 O2B 167.6 87.7 REMARK 620 4 ONM A 306 O3G 113.6 109.9 72.2 REMARK 620 5 ONM A 306 O2A 108.1 139.0 60.6 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD2 REMARK 620 2 ASP A 104 OD1 107.0 REMARK 620 3 ONM A 306 O2A 103.6 81.2 REMARK 620 4 HOH A 506 O 82.0 163.6 83.4 REMARK 620 N 1 2 3 DBREF 7YZ9 A 7 233 UNP P9WQ35 CYA1_MYCTU 203 429 DBREF 7YZ9 B 4 131 PDB 7YZ9 7YZ9 4 131 SEQADV 7YZ9 MET A -20 UNP P9WQ35 INITIATING METHIONINE SEQADV 7YZ9 GLY A -19 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -18 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -17 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -16 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -15 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -14 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -13 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -12 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -11 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -10 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A -9 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 SER A -8 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 SER A -7 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 GLY A -6 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 LEU A -5 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 GLU A -4 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 VAL A -3 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 LEU A -2 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 PHE A -1 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 GLN A 0 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 GLY A 1 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 PRO A 2 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 SER A 3 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 GLY A 4 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 HIS A 5 UNP P9WQ35 EXPRESSION TAG SEQADV 7YZ9 MET A 6 UNP P9WQ35 EXPRESSION TAG SEQRES 1 A 254 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 254 SER GLY LEU GLU VAL LEU PHE GLN GLY PRO SER GLY HIS SEQRES 3 A 254 MET ARG ASP THR ALA ARG ALA GLU ALA VAL MET GLU ALA SEQRES 4 A 254 GLU HIS ASP ARG SER GLU ALA LEU LEU ALA ASN MET LEU SEQRES 5 A 254 PRO ALA SER ILE ALA GLU ARG LEU LYS GLU PRO GLU ARG SEQRES 6 A 254 ASN ILE ILE ALA ASP LYS TYR ASP GLU ALA SER VAL LEU SEQRES 7 A 254 PHE ALA ASP ILE VAL GLY PHE THR GLU ARG ALA SER SER SEQRES 8 A 254 THR ALA PRO ALA ASP LEU VAL ARG PHE LEU ASP ARG LEU SEQRES 9 A 254 TYR SER ALA PHE ASP GLU LEU VAL ASP GLN HIS GLY LEU SEQRES 10 A 254 GLU LYS ILE LYS VAL SER GLY ASP SER TYR MET VAL VAL SEQRES 11 A 254 SER GLY VAL PRO ARG PRO ARG PRO ASP HIS THR GLN ALA SEQRES 12 A 254 LEU ALA ASP PHE ALA LEU ASP MET THR ASN VAL ALA ALA SEQRES 13 A 254 GLN LEU LYS ASP PRO ARG GLY ASN PRO VAL PRO LEU ARG SEQRES 14 A 254 VAL GLY LEU ALA THR GLY PRO VAL VAL ALA GLY VAL VAL SEQRES 15 A 254 GLY SER ARG ARG PHE PHE TYR ASP VAL TRP GLY ASP ALA SEQRES 16 A 254 VAL ASN VAL ALA SER ARG MET GLU SER THR ASP SER VAL SEQRES 17 A 254 GLY GLN ILE GLN VAL PRO ASP GLU VAL TYR GLU ARG LEU SEQRES 18 A 254 LYS ASP ASP PHE VAL LEU ARG GLU ARG GLY HIS ILE ASN SEQRES 19 A 254 VAL LYS GLY LYS GLY VAL MET ARG THR TRP TYR LEU ILE SEQRES 20 A 254 GLY ARG LYS VAL ALA ALA ASP SEQRES 1 B 128 MET ALA GLN TRP GLN LEU VAL GLU SER GLY GLY GLY LEU SEQRES 2 B 128 VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS THR ALA SEQRES 3 B 128 SER GLY ILE ILE LEU SER ILE ASN SER MET GLY TRP TYR SEQRES 4 B 128 ARG GLN THR ALA GLY ASN GLU ARG GLU TRP VAL ALA PHE SEQRES 5 B 128 SER THR ALA GLY GLY SER THR THR TYR ALA ASP SER VAL SEQRES 6 B 128 LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SEQRES 7 B 128 THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP SEQRES 8 B 128 THR ALA VAL TYR TYR CYS ASN THR PRO ALA GLY ARG VAL SEQRES 9 B 128 GLY GLY THR TRP GLY GLN GLY THR PRO VAL THR VAL SER SEQRES 10 B 128 SER HIS HIS HIS HIS HIS HIS GLU PRO GLU ALA HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET GOL A 304 6 HET GOL A 305 6 HET ONM A 306 42 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETNAM ONM 3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 3(MN 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 8 ONM C18 H23 N6 O15 P3 FORMUL 9 HOH *155(H2 O) HELIX 1 AA1 GLY A 63 THR A 71 1 9 HELIX 2 AA2 ALA A 72 GLY A 95 1 24 HELIX 3 AA3 ASP A 118 LEU A 137 1 20 HELIX 4 AA4 GLY A 172 THR A 184 1 13 HELIX 5 AA5 ASP A 194 LYS A 201 1 8 HELIX 6 AA6 ILE B 33 ASN B 37 5 5 HELIX 7 AA7 LYS B 91 THR B 95 5 5 HELIX 8 AA8 THR B 102 GLY B 109 1 8 SHEET 1 AA1 5 GLU A 97 SER A 102 0 SHEET 2 AA1 5 SER A 105 SER A 110 -1 O MET A 107 N LYS A 100 SHEET 3 AA1 5 ILE A 47 ILE A 61 -1 N LEU A 57 O VAL A 108 SHEET 4 AA1 5 LEU A 147 VAL A 160 -1 O ALA A 158 N ASP A 49 SHEET 5 AA1 5 TYR A 168 TRP A 171 -1 O ASP A 169 N GLY A 159 SHEET 1 AA2 7 GLU A 97 SER A 102 0 SHEET 2 AA2 7 SER A 105 SER A 110 -1 O MET A 107 N LYS A 100 SHEET 3 AA2 7 ILE A 47 ILE A 61 -1 N LEU A 57 O VAL A 108 SHEET 4 AA2 7 LEU A 147 VAL A 160 -1 O ALA A 158 N ASP A 49 SHEET 5 AA2 7 ILE A 190 PRO A 193 1 O GLN A 191 N VAL A 149 SHEET 6 AA2 7 THR A 222 ARG A 228 -1 O TRP A 223 N VAL A 192 SHEET 7 AA2 7 PHE A 204 GLU A 208 -1 N ARG A 207 O TYR A 224 SHEET 1 AA3 4 GLN B 8 SER B 12 0 SHEET 2 AA3 4 LEU B 23 SER B 30 -1 O SER B 26 N SER B 12 SHEET 3 AA3 4 THR B 82 MET B 87 -1 O MET B 87 N LEU B 23 SHEET 4 AA3 4 PHE B 72 ASP B 77 -1 N SER B 75 O TYR B 84 SHEET 1 AA4 6 GLY B 15 VAL B 17 0 SHEET 2 AA4 6 THR B 115 VAL B 119 1 O THR B 118 N VAL B 17 SHEET 3 AA4 6 ALA B 96 ASN B 101 -1 N TYR B 98 O THR B 115 SHEET 4 AA4 6 MET B 39 GLN B 44 -1 N TYR B 42 O TYR B 99 SHEET 5 AA4 6 GLU B 51 SER B 56 -1 O SER B 56 N MET B 39 SHEET 6 AA4 6 THR B 62 TYR B 64 -1 O THR B 63 N PHE B 55 SSBOND 1 CYS B 27 CYS B 100 1555 1555 2.03 LINK OD1 ASP A 60 MN MN A 301 1555 1555 1.82 LINK OD2 ASP A 60 MN MN A 303 1555 1555 2.16 LINK O ILE A 61 MN MN A 301 1555 1555 2.08 LINK OD1 ASP A 104 MN MN A 303 1555 1555 2.66 LINK MN MN A 301 O2B ONM A 306 1555 1555 2.31 LINK MN MN A 301 O3G ONM A 306 1555 1555 2.04 LINK MN MN A 301 O2A ONM A 306 1555 1555 2.77 LINK MN MN A 303 O2A ONM A 306 1555 1555 2.50 LINK MN MN A 303 O HOH A 506 1555 12555 2.54 CISPEP 1 VAL A 112 PRO A 113 0 5.70 CRYST1 94.793 94.793 119.655 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010549 0.006091 0.000000 0.00000 SCALE2 0.000000 0.012181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008357 0.00000