HEADER TRANSLATION 21-FEB-22 7YZN TITLE STRUCTURE OF C-TERMINALLY TRUNCATED AIF5B FROM PYROCOCCUS ABYSSI TITLE 2 COMPLEXED WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSLATION INITIATION FACTOR IF-2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI GE5; SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: INFB, PYRAB11390, PAB0755; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15BLPA KEYWDS RIBOSOME, INITIATOR TRNA, INITIATION FACTOR, EIF5B, IF2, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR G.BOURGEOIS,E.SCHMITT,Y.MECHULAM,P.D.COUREUX,R.KAZAN REVDAT 3 01-MAY-24 7YZN 1 REMARK REVDAT 2 31-AUG-22 7YZN 1 JRNL REVDAT 1 29-JUN-22 7YZN 0 JRNL AUTH R.KAZAN,G.BOURGEOIS,C.LAZENNEC-SCHURDEVIN,E.LARQUET, JRNL AUTH 2 Y.MECHULAM,P.D.COUREUX,E.SCHMITT JRNL TITL ROLE OF AIF5B IN ARCHAEAL TRANSLATION INITIATION. JRNL REF NUCLEIC ACIDS RES. V. 50 6532 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35694843 JRNL DOI 10.1093/NAR/GKAC490 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 61004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7500 - 4.6900 1.00 3047 162 0.1782 0.2115 REMARK 3 2 4.6900 - 3.7200 1.00 2865 148 0.1408 0.1483 REMARK 3 3 3.7200 - 3.2500 1.00 2835 141 0.1603 0.1933 REMARK 3 4 3.2500 - 2.9500 1.00 2811 135 0.1693 0.1945 REMARK 3 5 2.9500 - 2.7400 1.00 2751 169 0.1683 0.2172 REMARK 3 6 2.7400 - 2.5800 1.00 2785 115 0.1612 0.1917 REMARK 3 7 2.5800 - 2.4500 1.00 2758 162 0.1548 0.1794 REMARK 3 8 2.4500 - 2.3500 1.00 2755 134 0.1574 0.1988 REMARK 3 9 2.3400 - 2.2500 1.00 2756 135 0.1623 0.1806 REMARK 3 10 2.2500 - 2.1800 1.00 2736 135 0.1568 0.1747 REMARK 3 11 2.1800 - 2.1100 1.00 2759 140 0.1626 0.2061 REMARK 3 12 2.1100 - 2.0500 1.00 2710 153 0.1710 0.2001 REMARK 3 13 2.0500 - 1.9900 1.00 2721 145 0.1751 0.1919 REMARK 3 14 1.9900 - 1.9500 1.00 2721 139 0.1747 0.1837 REMARK 3 15 1.9500 - 1.9000 1.00 2739 117 0.1762 0.2023 REMARK 3 16 1.9000 - 1.8600 1.00 2722 141 0.1866 0.2379 REMARK 3 17 1.8600 - 1.8200 1.00 2719 133 0.2132 0.2682 REMARK 3 18 1.8200 - 1.7900 1.00 2743 131 0.2255 0.2655 REMARK 3 19 1.7900 - 1.7600 1.00 2701 120 0.2634 0.2724 REMARK 3 20 1.7600 - 1.7300 1.00 2733 131 0.2938 0.3176 REMARK 3 21 1.7300 - 1.7000 1.00 2711 140 0.3459 0.3966 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.224 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3732 REMARK 3 ANGLE : 1.046 5082 REMARK 3 CHIRALITY : 0.300 600 REMARK 3 PLANARITY : 0.008 664 REMARK 3 DIHEDRAL : 28.796 1462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2381 -22.3373 -22.5315 REMARK 3 T TENSOR REMARK 3 T11: 0.1040 T22: 0.1955 REMARK 3 T33: 0.1791 T12: 0.0026 REMARK 3 T13: 0.0066 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.2418 L22: 0.3957 REMARK 3 L33: 1.0604 L12: -0.0118 REMARK 3 L13: -0.1855 L23: 0.0288 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0626 S13: -0.0969 REMARK 3 S21: -0.0104 S22: -0.0191 S23: -0.0223 REMARK 3 S31: 0.0444 S32: -0.0034 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1885 -2.8970 -38.4295 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.3833 REMARK 3 T33: 0.3628 T12: 0.1140 REMARK 3 T13: 0.0727 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.0294 L22: 0.0131 REMARK 3 L33: 0.5536 L12: 0.0307 REMARK 3 L13: -0.1388 L23: -0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: 0.3445 S13: 0.1252 REMARK 3 S21: -0.0756 S22: -0.1182 S23: 0.2386 REMARK 3 S31: 0.0924 S32: -0.3476 S33: 0.0556 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 365 THROUGH 455 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1453 9.8512 -30.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.5275 T22: 0.2909 REMARK 3 T33: 0.5325 T12: 0.0246 REMARK 3 T13: 0.1033 T23: 0.0841 REMARK 3 L TENSOR REMARK 3 L11: 0.1347 L22: 0.1185 REMARK 3 L33: 0.1993 L12: 0.0171 REMARK 3 L13: -0.0808 L23: -0.0986 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.2762 S13: 0.5085 REMARK 3 S21: -0.3435 S22: 0.2099 S23: 0.0082 REMARK 3 S31: -0.4554 S32: -0.1757 S33: 0.0392 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7YZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-22. REMARK 100 THE DEPOSITION ID IS D_1292121269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61785 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.88500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PA-AIF5B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% TACSIMATE; 20% PEG3350, PH 5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.91000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.13000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.45500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.13000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.36500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.45500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 154.36500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.91000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 LYS A 456 REMARK 465 LYS A 457 REMARK 465 LYS A 458 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 292 O HOH A 602 1.35 REMARK 500 HH21 ARG A 383 OE1 GLU A 397 1.59 REMARK 500 O HOH A 841 O HOH A 898 2.06 REMARK 500 O HOH A 652 O HOH A 777 2.08 REMARK 500 OE1 GLU A 118 O HOH A 601 2.10 REMARK 500 O HOH A 823 O HOH A 836 2.13 REMARK 500 NE ARG A 292 O HOH A 602 2.16 REMARK 500 O HOH A 843 O HOH A 858 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 794 O HOH A 902 6444 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 85 40.55 -95.00 REMARK 500 LYS A 133 34.25 70.90 REMARK 500 ASP A 293 66.10 -154.66 REMARK 500 LYS A 355 -5.44 71.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 944 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 945 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 503 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 17 OD1 REMARK 620 2 GLY A 39 O 105.7 REMARK 620 3 GTP A 502 O3G 107.1 106.2 REMARK 620 4 GTP A 502 O3B 96.6 153.3 52.0 REMARK 620 5 GTP A 502 O1A 114.5 112.2 110.6 69.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 21 OG1 REMARK 620 2 THR A 41 OG1 90.8 REMARK 620 3 GTP A 502 O1G 166.7 93.0 REMARK 620 4 GTP A 502 O1B 90.7 169.9 87.8 REMARK 620 5 HOH A 615 O 79.6 94.4 87.4 95.7 REMARK 620 6 HOH A 675 O 91.4 85.0 101.6 84.9 171.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7YYP RELATED DB: PDB REMARK 900 SAME PROTEIN BUT FULL-LENGTH AND COMPLEXED WITH GDP DBREF 7YZN A 1 20 UNP Q9UZK7 IF2P_PYRAB 1 20 DBREF 7YZN A 21 458 UNP Q9UZK7 IF2P_PYRAB 415 852 SEQADV 7YZN GLY A -18 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN SER A -17 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN SER A -16 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A -15 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A -14 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A -13 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A -12 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A -11 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A -10 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN SER A -9 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN SER A -8 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN GLY A -7 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN LEU A -6 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN VAL A -5 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN PRO A -4 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN ARG A -3 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN GLY A -2 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN SER A -1 UNP Q9UZK7 EXPRESSION TAG SEQADV 7YZN HIS A 0 UNP Q9UZK7 EXPRESSION TAG SEQRES 1 A 477 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 477 VAL PRO ARG GLY SER HIS MET THR LYS ARG ILE ARG GLN SEQRES 3 A 477 PRO ILE ILE ALA VAL LEU GLY HIS VAL ASP HIS GLY LYS SEQRES 4 A 477 THR THR LEU LEU ASP ARG ILE ARG LYS THR ASN VAL ALA SEQRES 5 A 477 ALA LYS GLU ALA GLY GLY ILE THR GLN HIS ILE GLY ALA SEQRES 6 A 477 THR GLU VAL PRO ILE GLU VAL VAL LYS LYS ILE ALA GLY SEQRES 7 A 477 PRO LEU ILE LYS LEU TRP LYS ALA GLU ILE LYS LEU PRO SEQRES 8 A 477 GLY LEU LEU PHE ILE ASP THR PRO GLY HIS GLU ALA PHE SEQRES 9 A 477 THR SER LEU ARG ALA ARG GLY GLY SER LEU ALA ASP LEU SEQRES 10 A 477 ALA VAL LEU VAL VAL ASP ILE ASN GLU GLY PHE GLN PRO SEQRES 11 A 477 GLN THR ILE GLU SER ILE GLU ILE LEU ARG LYS TYR ARG SEQRES 12 A 477 THR PRO PHE VAL VAL ALA ALA ASN LYS ILE ASP ARG ILE SEQRES 13 A 477 LYS GLY TRP VAL ILE GLU GLU ASP GLU PRO PHE LEU MET SEQRES 14 A 477 ASN ILE LYS LYS GLN ASP GLN ARG ALA VAL GLN GLU LEU SEQRES 15 A 477 GLU THR LYS LEU TRP GLU LEU ILE GLY LYS PHE TYR GLU SEQRES 16 A 477 PHE GLY PHE GLN ALA ASN ARG PHE ASP ARG VAL GLN ASN SEQRES 17 A 477 PHE THR ARG GLU LEU ALA ILE VAL PRO ILE SER ALA LYS SEQRES 18 A 477 TYR GLY ILE GLY ILE ALA GLU LEU LEU VAL LEU ILE ALA SEQRES 19 A 477 GLY LEU SER GLN ARG TYR LEU GLU GLU LYS LEU LYS ILE SEQRES 20 A 477 GLU VAL GLU GLY PRO ALA ARG GLY THR ILE LEU GLU VAL SEQRES 21 A 477 ARG GLU GLU PRO GLY LEU GLY HIS THR ILE ASP VAL ILE SEQRES 22 A 477 ILE TYR ASP GLY THR LEU HIS LYS ASP ASP THR ILE VAL SEQRES 23 A 477 VAL GLY GLY LYS ASP LYS ALA ILE VAL THR LYS ILE ARG SEQRES 24 A 477 ALA LEU LEU LYS PRO LYS PRO LEU ASP GLU ILE ARG ASP SEQRES 25 A 477 PRO ARG PHE ARG PHE ASP TYR VAL ASP GLU VAL THR ALA SEQRES 26 A 477 ALA ALA GLY VAL LYS ILE ALA ALA PRO GLY LEU GLU GLU SEQRES 27 A 477 ALA LEU ALA GLY SER PRO VAL ILE ALA ALA PRO THR PRO SEQRES 28 A 477 GLU ASP VAL GLU LYS ALA LYS GLN GLU ILE LEU GLU GLN SEQRES 29 A 477 ILE GLU ARG VAL VAL ILE SER THR ASP LYS VAL GLY VAL SEQRES 30 A 477 ILE VAL LYS ALA ASP THR LEU GLY SER LEU GLU ALA LEU SEQRES 31 A 477 SER LYS GLU LEU GLN GLU LYS GLU ILE PRO ILE ARG LYS SEQRES 32 A 477 ALA ASP VAL GLY ASN VAL SER LYS THR ASP VAL MET GLU SEQRES 33 A 477 ALA LEU SER VAL LYS GLU GLU GLU PRO LYS TYR GLY VAL SEQRES 34 A 477 ILE LEU GLY PHE ASN VAL LYS VAL ASN GLU ASP ALA GLU SEQRES 35 A 477 GLU VAL ALA LYS ALA LYS ASP VAL LYS ILE PHE VAL GLY SEQRES 36 A 477 ASN VAL ILE TYR LYS LEU ILE GLU ASP TYR GLU GLU TRP SEQRES 37 A 477 VAL LYS GLU GLU GLU GLU LYS LYS LYS HET MG A 501 1 HET GTP A 502 44 HET NA A 503 1 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM NA SODIUM ION FORMUL 2 MG MG 2+ FORMUL 3 GTP C10 H16 N5 O14 P3 FORMUL 4 NA NA 1+ FORMUL 5 HOH *345(H2 O) HELIX 1 AA1 GLY A 19 LYS A 29 1 11 HELIX 2 AA2 ASN A 31 GLU A 36 1 6 HELIX 3 AA3 ALA A 37 ILE A 40 5 4 HELIX 4 AA4 ILE A 51 GLY A 59 1 9 HELIX 5 AA5 PRO A 60 TRP A 65 5 6 HELIX 6 AA6 HIS A 82 ALA A 84 5 3 HELIX 7 AA7 PHE A 85 ALA A 96 1 12 HELIX 8 AA8 GLN A 110 ARG A 124 1 15 HELIX 9 AA9 LYS A 133 ILE A 137 5 5 HELIX 10 AB1 PRO A 147 ILE A 152 1 6 HELIX 11 AB2 LYS A 153 GLN A 155 5 3 HELIX 12 AB3 ASP A 156 PHE A 177 1 22 HELIX 13 AB4 ASP A 185 VAL A 187 5 3 HELIX 14 AB5 GLY A 206 LEU A 226 1 21 HELIX 15 AB6 GLY A 316 ALA A 320 5 5 HELIX 16 AB7 THR A 331 VAL A 349 1 19 HELIX 17 AB8 THR A 364 LYS A 378 1 15 HELIX 18 AB9 SER A 391 GLU A 405 1 15 HELIX 19 AC1 PRO A 406 TYR A 408 5 3 HELIX 20 AC2 ASN A 419 ASP A 430 1 12 HELIX 21 AC3 VAL A 438 GLU A 455 1 18 SHEET 1 AA1 7 GLY A 45 PRO A 50 0 SHEET 2 AA1 7 GLY A 73 ASP A 78 -1 O LEU A 74 N VAL A 49 SHEET 3 AA1 7 ILE A 9 LEU A 13 1 N ILE A 10 O LEU A 75 SHEET 4 AA1 7 LEU A 98 ASP A 104 1 O VAL A 102 N LEU A 13 SHEET 5 AA1 7 PHE A 127 ASN A 132 1 O VAL A 128 N LEU A 101 SHEET 6 AA1 7 GLU A 193 PRO A 198 1 O VAL A 197 N VAL A 129 SHEET 7 AA1 7 GLN A 180 ARG A 183 1 N GLN A 180 O LEU A 194 SHEET 1 AA2 8 ILE A 275 LYS A 278 0 SHEET 2 AA2 8 THR A 265 VAL A 268 -1 N ILE A 266 O THR A 277 SHEET 3 AA2 8 PRO A 325 ALA A 328 -1 O ILE A 327 N VAL A 267 SHEET 4 AA2 8 ARG A 235 GLU A 244 -1 N GLY A 236 O VAL A 326 SHEET 5 AA2 8 GLY A 248 ASP A 257 -1 O THR A 250 N ARG A 242 SHEET 6 AA2 8 ALA A 308 ALA A 313 -1 O ILE A 312 N ILE A 251 SHEET 7 AA2 8 ALA A 281 LYS A 284 -1 N LEU A 283 O LYS A 311 SHEET 8 AA2 8 ASP A 299 VAL A 301 -1 O ASP A 299 N LYS A 284 SHEET 1 AA3 2 THR A 259 HIS A 261 0 SHEET 2 AA3 2 GLU A 303 THR A 305 -1 O VAL A 304 N LEU A 260 SHEET 1 AA4 4 ILE A 382 VAL A 387 0 SHEET 2 AA4 4 VAL A 358 ALA A 362 1 N VAL A 358 O ARG A 383 SHEET 3 AA4 4 VAL A 410 PHE A 414 1 O LEU A 412 N ILE A 359 SHEET 4 AA4 4 LYS A 432 GLY A 436 1 O PHE A 434 N GLY A 413 LINK OD1 ASP A 17 NA NA A 503 1555 1555 2.73 LINK OG1 THR A 21 MG MG A 501 1555 1555 2.14 LINK O GLY A 39 NA NA A 503 1555 1555 2.79 LINK OG1 THR A 41 MG MG A 501 1555 1555 2.14 LINK MG MG A 501 O1G GTP A 502 1555 1555 2.02 LINK MG MG A 501 O1B GTP A 502 1555 1555 2.13 LINK MG MG A 501 O HOH A 615 1555 1555 2.09 LINK MG MG A 501 O HOH A 675 1555 1555 2.09 LINK O3G GTP A 502 NA NA A 503 1555 1555 2.91 LINK O3B GTP A 502 NA NA A 503 1555 1555 3.03 LINK O1A GTP A 502 NA NA A 503 1555 1555 2.92 CISPEP 1 ALA A 306 ALA A 307 0 -8.91 CRYST1 72.260 72.260 205.820 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013839 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004859 0.00000